• Issue

    Clinical and Translational Medicine: Volume 15, Issue 3

    March 2025

ISSUE INFORMATION

Open Access

CLINICAL AND TRANSLATIONAL MEDICINE

  • First Published: 04 March 2025

RESEARCH ARTICLE

Open Access

Nuclear factor erythroid 2-related factor 2 ameliorates disordered glucose and lipid metabolism in liver: Involvement of gasdermin D in regulating pyroptosis

  • First Published: 24 February 2025
Nuclear factor erythroid 2-related factor 2 ameliorates disordered glucose and lipid metabolism in liver: Involvement of gasdermin D in regulating pyroptosis

  • MAFLD is associated with increased hepatocytes NRF2 expression.
  • NRF2 alleviates MAFLD by suppressing pyroptosis.
  • NRF2 directly inhibits GSDMD expression to regulate pyroptosis.
  • Targeting the NRF2–pyroptosis (GSDMD) axis offers a potential therapeutic strategy for MAFLD.

Open Access

Kibra knockdown inhibits the aberrant Hippo pathway, suppresses renal cyst formation and ameliorates renal fibrosis in nphp1KO mice

  • First Published: 24 February 2025
Kibra knockdown inhibits the aberrant Hippo pathway, suppresses renal cyst formation and ameliorates renal fibrosis in nphp1KO mice

• Canonical Hippo pathway activated in nphp1-deficient disease models and patients.

• Kibra was a key upstream molecule in regulating the activation of canonical Hippo pathway in nphp1-deficient disease models and patients and closely related to renal cyst formation and fibrosis in nphp1KO mice.

Open Access

Comprehensive transcriptome, miRNA and kinome profiling identifies new treatment options for personalized lung cancer therapy

  • First Published: 24 February 2025
Comprehensive transcriptome, miRNA and kinome profiling identifies new treatment options for personalized lung cancer therapy

Kinase inhibition–based therapies are recommended for a small subset of LC patients with driver mutations. Through enabling technologies and bioinformatics, we demonstrate the potential of KI-based therapies based on the patient specific needs. Thus, most LC patients become eligible for such treatment algorithms.

Open Access

Genome-wide profiling of N6-methyladenosine-modified pseudogene-derived long noncoding RNAs reveals the tumour-promoting and innate immune-restraining function of RPS15AP12 in ovarian cancer

  • First Published: 25 February 2025
Genome-wide profiling of N6-methyladenosine-modified pseudogene-derived long noncoding RNAs reveals the tumour-promoting and innate immune-restraining function of RPS15AP12 in ovarian cancer

Genome-wide profiling reveals the redistribution of m6A modification on pseudogene-derived lncRNAs and m6A redistribution-relevant dysregulation of pseudogenes in HGSOC. RPS15AP12, as a representative processed pseudogene, is up-regulated by FTO-mediated demethylation and acts as a miRNA sponge to promote RPS15A expression via competitively binding to miR-96-3p. The RPS15AP12/ RPS15A axis exhibits an anti-tumour effect via inhibiting innate immune response in ovarian cancer.

Open Access

Targeting Zfp36 to combat cardiac hypertrophy: Insights into ferroptosis pathways

  • First Published: 25 February 2025
Targeting Zfp36 to combat cardiac hypertrophy: Insights into ferroptosis pathways

Zinc finger protein 36 bounds to the 3′ untranslated region of Ythdc2 mRNA, facilitating its degradation. Ythdc2 can bind to SLC7A11 mRNA to accelerate its decay, thereby reducing glutathione levels and aggravating ferroptosis-induced cardiac hypertrophy.

Open Access

Predictive circulating biomarkers of the response to anti-PD-1 immunotherapy in advanced HER2 negative breast cancer

  • First Published: 25 February 2025
Predictive circulating biomarkers of the response to anti-PD-1 immunotherapy in advanced HER2 negative breast cancer

Our study identified that the proportions of CD39+ Tregs and moDCs in the peripheral blood were correlated with the response to immunotherapy in patients with advanced breast cancer. These two subpopulations are potential predictive biomarkers for determining patient prognosis, offering valuable guidance for treatment strategies.

Open Access

An adoptive cell therapy with TREM2-overexpressing macrophages mitigates the transition from acute kidney injury to chronic kidney disease

  • First Published: 25 February 2025
An adoptive cell therapy with TREM2-overexpressing macrophages mitigates the transition from acute kidney injury to chronic kidney disease

In unilateral ischaemia–reperfusion injury (UIRI), Trem2 expression is upregulated by hypoxia via HIF-1α in macrophages, and the activation of Trem2 enhances phagocytosis and reduces cytokine production through the PI3K-AKT pathway in macrophages. An adoptive cell therapy using Triggering Receptor Expressed on Myeloid Cells 2 (TREM2)-overexpressing macrophages effectively mitigates the transition from acute kidney injury (AKI) to chronic kidney disease (CKD) in UIRI animals.

Open Access

PIWI-interacting RNA MIABEPIR regulates cerebral endothelial cell function via DAPK2 pathway in offspring following maternal immune activation

  • First Published: 25 February 2025
PIWI-interacting RNA MIABEPIR regulates cerebral endothelial cell function via DAPK2 pathway in offspring following maternal immune activation

MIABEPIR, a brain endothelial piRNA, as a key regulator of neurovascular dysfunction in maternal immune activation. MIABEPIR modulates BBB integrity and endothelial autophagy through the Dapk2 pathway, highlighting a potential therapeutic target for neurodevelopmental disorders.

Open Access

LINC01088 prevents ferroptosis in glioblastoma by enhancing SLC7A11 via HLTF/USP7 axis

  • First Published: 25 February 2025
LINC01088 prevents ferroptosis in glioblastoma by enhancing SLC7A11 via HLTF/USP7 axis

Schematic model detailing the molecular mechanisms of LINC01088 in normal brain cells and GBM cells.

LINC01088 is transcriptionally upregulated by SP1.

LINC01088 acts as a scaffold platform to bind USP7 and HLTF.

USP7, as a deubiquitinating enzyme of HLTF, participates in inhibiting the ubiquitin-proteasome degradation of HLTF.

HLTF transcriptionally upregates the expression of downstream SLC7A11, and ferroptosis of GBM cells was inhibited.

Open Access

Enhanced human adipose-derived stem cells with VEGFA and bFGF mRNA promote stable vascular regeneration and improve cardiac function following myocardial infarction

  • First Published: 26 February 2025
Enhanced human adipose-derived stem cells with VEGFA and bFGF mRNA promote stable vascular regeneration and improve cardiac function following myocardial infarction

  1. ModRNAs-transfected hADSCs exhibit pulsed and transient expression, enabling efficient production of functional VEGFA and bFGF proteins.
  2. Intracardiac injection of these engineered hADSCs leads to the enhancement of cardiac function and the improvement of electrical conduction.
  3. The hADSCsdual mainly exerts its effect on myocardial infarction by promoting stable vascular regeneration and suppressing cell apoptosis.

REVIEW

Open Access

Detection, molecular function and mechanisms of m5C in cancer

  • First Published: 26 February 2025
Detection, molecular function and mechanisms of m5C in cancer

The role of m5C in cancers. The role of m5C regulators- writers, erasers, and readers- in various cancer types, including NSCLC, PCa, GC, AML, BCa, and HCC.

RESEARCH ARTICLE

Open Access

Irisin-mediated muscle-renal crosstalk as a protective mechanism against contrast-induced acute kidney injury via cGAS-STING signalling inhibition

  • First Published: 26 February 2025
Irisin-mediated muscle-renal crosstalk as a protective mechanism against contrast-induced acute kidney injury via cGAS-STING signalling inhibition

Irisin is identified as a crucial factor in muscle‒kidney crosstalk, inhibiting cGAS-STING signaling and preventing dsDNA leakage via integrin αV/β5 in tubular epithelial cells (TECs), thus mitigating tubular injury and inflammation.

RESEARCH ARTICLE

Open Access

SH3GL1-activated FTH1 inhibits ferroptosis and confers doxorubicin resistance in diffuse large B-cell lymphoma

  • First Published: 04 March 2025
SH3GL1-activated FTH1 inhibits ferroptosis and confers doxorubicin resistance in diffuse large B-cell lymphoma

Elevated expression levels of SH3GL1 in patients with diffuse large B-cell lymphoma (DLBCL) was associated with poor prognostic outcomes.

SH3GL1 plays an important role in promoting DLBCL cell survival through the regulation of ferritin heavy chain 1 (FTH1)-mediated ferroptosis and doxorubicin resistance.

SH3GL1 can be a valuable prognostic biomarker and a potential target for anti-DLBCL intervention in the future .

REVIEW

Open Access

Deciphering the epigenetic role of long non-coding RNAs in mood disorders: Focus on human brain studies

  • First Published: 04 March 2025
Deciphering the epigenetic role of long non-coding RNAs in mood disorders: Focus on human brain studies

  • Brain-centric lncRNAs regulate gene networks, and their disruption is linked to MDD.
  • In MDD, altered lncRNAs disrupt gene regulation by changing chromatin looping or modifying chromatin accessibility.
  • These changes lead to neuronal dysfunction, affecting neural circuitry and synaptic plasticity.
  • The result is impaired brain function, contributing to the symptoms of MDD.

RESEARCH ARTICLE

Open Access

Topical TYK2 inhibitor ameliorates psoriasis-like dermatitis via the AKT-SP1-NGFR-AP1 pathway in keratinocytes

  • First Published: 04 March 2025
Topical TYK2 inhibitor ameliorates psoriasis-like dermatitis via the AKT-SP1-NGFR-AP1 pathway in keratinocytes

  • Topical tyrosine kinase 2 (TYK2) inhibitor alleviates psoriasis-like dermatitis.
  • Topical TYK2 inhibitor reduces psoriasis progression through restraining the inflammatory responses of keratinocytes.
  • The inhibition of TYK2 regulates the inflammatory response of keratinocytes through AKT-SP1-NGFR-AP1 pathway.

REVIEW

Open Access

Ferroptosis of T cell in inflammation and tumour immunity

  • First Published: 05 March 2025
Ferroptosis of T cell in inflammation and tumour immunity

  • Ferroptosis-related mechanisms significantly affect the biology of CD4+ T-cell subsets and are further involved in inflammatory diseases.
  • Crosstalk between CD8+ T cells and tumour cells induces ferroptosis in the tumour microenvironment.
  • Glutathione peroxidase 4 loss promotes regulatory T-cell ferroptosis to enhance anti-tumour immunity.

RESEARCH ARTICLE

Open Access

The novel GSDMD inhibitor GI-Y2 exerts antipyroptotic effects to reduce atherosclerosis

  • First Published: 05 March 2025
The novel GSDMD inhibitor GI-Y2 exerts antipyroptotic effects to reduce atherosclerosis

We confirmed GI-Y2 as a novel inhibitor of GSDMD. GI-Y2 directly interacts with the Arg10 residue of GSDMD and reduces the membrane binding of GSDMD-N. We constructed macrophage membrane-coated GI-Y2 nanoparticles to enhance the targeting of GI-Y2 to macrophages in atheromatous plaques and demonstrated its vascular protective effect.

REVIEW

Open Access

Vascularised organoids: Recent advances and applications in cancer research

  • First Published: 05 March 2025
Vascularised organoids: Recent advances and applications in cancer research

This review explores vascularised organoids in oncology, highlighting their advantages over 2D cultures and animal models in replicating the tumour microenvironment. It examines fabrication methods, vascularisation techniques and advancements in biomaterials, emphasising their applications in studying vasculature–cancer interactions, drug screening and advancing cancer research and clinical practice.

RESEARCH ARTICLE

Open Access

BRAFV600E-PROTAC versus inhibitors in melanoma cells: Deep transcriptomic characterization

  • First Published: 05 March 2025
BRAFV600E-PROTAC versus inhibitors in melanoma cells: Deep transcriptomic characterization

Schematic depiction of MAPK signalling pathway and its cellular effects within the context of BRAFV600E inhibition and PROTAC-mediated degradation.

Open Access

Exon junction complexes regulate osteoclast-induced bone resorption by influencing the NFATc1 m6A distribution through the “shield effect”

  • First Published: 06 March 2025
Exon junction complexes regulate osteoclast-induced bone resorption by influencing the NFATc1 m6A distribution through the “shield effect”

EJCs protected the methylation sites of the NFATc1 gene (located in the inner exon fragment of 50–200 nt) from hypermethylation and degradation, and the “shields” disappeared when the exon fragment was extended to 300 nt. Downstream, YTHDF2 induced the degradation of NFATc1 transcripts without site restriction. EJCs act as “shields” to regulate the m6A region selectivity of the NFATc1 gene, thereby determining the characteristics of the m6A distribution in this gene.

Open Access

Id2 exacerbates the development of rheumatoid arthritis by increasing IFN-γ production in CD4+ T cells

  • First Published: 06 March 2025
Id2 exacerbates the development of rheumatoid arthritis by increasing IFN-γ production in CD4+ T cells

Schematic mechanism of inhibitor of differentiation 2 (Id2)-mediated interferon-γ (IFN-γ) expression upregulation in the pathogenesis of rheumatoid arthritis (RA).

Open Access

Integrated spatial multi-omics profiling of Fusobacterium nucleatum in breast cancer unveils its role in tumour microenvironment modulation and cancer progression

  • First Published: 11 March 2025
Integrated spatial multi-omics profiling of Fusobacterium nucleatum in breast cancer unveils its role in tumour microenvironment modulation and cancer progression

  • Intratumoral Fusobacterium nucleatum exhibits significant spatial heterogeneity within breast cancer tissues.
  • F. nucleatum colonization alters the expression of key proteins involved in tumour progression and migration.
  • The MAPK signalling pathway is a critical mediator of F. nucleatum-induced breast cancer cell proliferation and migration.
  • VEGFD and PAK1 are potential therapeutic targets to mitigate F. nucleatum-induced tumour progression.

Open Access

Aberrant DNA methylation of genes regulating CD4+ T cell HIV-1 reservoir in women with HIV

  • First Published: 11 March 2025
Aberrant DNA methylation of genes regulating CD4+ T cell HIV-1 reservoir in women with HIV

  • Study involved 427 women with HIV.
  • Identified 245 aberrant DNA methylation sites and 85 methylation regions in CD4+ T cells linked to the HIV-1 reservoir.
  • Highlighted genes are involved in viral replication, immune defence, and host genome integration.
  • Findings suggest potential molecular targets for eradication strategies.

Open Access

p53 inhibits OTUD5 transcription to promote GPX4 degradation and induce ferroptosis in gastric cancer

  • First Published: 11 March 2025
p53 inhibits OTUD5 transcription to promote GPX4 degradation and induce ferroptosis in gastric cancer

In gastric cancer cells harbouring p53 mutations, ovarian tumour domain-containing 5 (OTUD5) transcription is upregulated due to the inactivation of p53, allowing OTUD5 to stabilise glutathione peroxidase 4 (GPX4) protein, inhibit ferroptosis and thereby promoting gastric cancer progression .

RESEARCH ARTICLE

Open Access

PADI4 facilitates stem-like properties and cisplatin resistance through upregulating PRMT2/IDs family in oesophageal squamous cell carcinoma

  • First Published: 13 March 2025
PADI4 facilitates stem-like properties and cisplatin resistance through upregulating PRMT2/IDs family in oesophageal squamous cell carcinoma

Citrullinization is a post-translational modification that has rarely been studied. Our research found that enzyme peptididylarginine deiminase 4 (PADI4) facilitates the citrullination of protein arginine methyltransferase 2 (PRMT2), a process essential for the stabilization of PRMT2 expression and the enhancement of its function in promoting the transcription of IDs family (ID1 and ID2) via histone arginine methylation. This mechanism subsequently increases cancer stem cells (CSCs) stemness and contributes to the cisplatin resistance observed in oesophageal squamous cell carcinoma (OSCC). Mutations at the R312 site or inhibition by GSK484 can attenuate stemness in OSCC, thereby reducing cisplatin resistance.

RESEARCH ARTICLE

Open Access

Targeting YBX1-m5C mediates RNF115 mRNA circularisation and translation to enhance vulnerability of ferroptosis in hepatocellular carcinoma

  • First Published: 15 March 2025
Targeting YBX1-m5C mediates RNF115 mRNA circularisation and translation to enhance vulnerability of ferroptosis in hepatocellular carcinoma

NOP2/Sun RNA methyltransferase 2 (NSUN2) promotes 5-methylcytosine (m5C) modification of Ring Finger Protein 115 (RNF115) mRNA, which is subsequently bound by YBX1. Then, YBX1 interacts with Eukaryotic Translation Initiation Factor 4A1 (EIF4A1) to promote RNF115 mRNA looping and translation. Subsequently, RNF115 interacts with dihydroorotate dehydrogenase (DHODH) to promote its K27 ubiquitination and inhibit the autophagic degradation of DHODH to resist ferroptosis and promote hepatocellular carcinoma (HCC) progression.

RESEARCH ARTICLE

Open Access

Preclinical B cell depletion and safety profile of a brain-shuttled crystallizable fragment-silenced CD20 antibody

  • First Published: 21 March 2025
Preclinical B cell depletion and safety profile of a brain-shuttled crystallizable fragment-silenced CD20 antibody

The BBB hinders mAb-based brain disorder therapies.

A brain-targeted B-cell-depleting mAb for MS that efficiently crosses the BBB via hTfR1 was developed using Brainshuttle technology (1A and 1B).

The Brainshuttle-CD20 mAb was well tolerated (2A and 2B) and displayed B-cell-killing properties (1C), paving the way for future development and clinical translation of TfR1-targeting therapies for increased brain penetration.

Open Access

HIF-1α-induced long noncoding RNA LINC02776 promotes drug resistance of ovarian cancer by increasing polyADP-ribosylation

  • First Published: 21 March 2025
HIF-1α-induced long noncoding RNA LINC02776 promotes drug resistance of ovarian cancer by increasing polyADP-ribosylation

LINC02776 was significantly upregulated in platinum-resistant ovarian cancer (OC) patients compared to those sensitive to platinum therapy. LINC02776 directly binds catalytic domain of PARP1 to enhance PARP1-dependent polyADP-ribosylation, thereby promoting homologous recombination (HR) restoration.