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EFG-CS: Predicting chemical shifts from amino acid sequences with protein structure prediction using machine learning and deep learning models
- First Published: 09 July 2024
Open Access
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MTR3D-AF2: Expanding the coverage of spatially derived missense tolerance scores across the human proteome using AlphaFold2
- First Published: 19 July 2024
Open Access
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DrugDomain: The evolutionary context of drugs and small molecules bound to domains
- First Published: 09 July 2024
Open Access
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UCSF ChimeraX: Tools for structure building and analysis
- First Published: 29 September 2023
Open Access
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Key interaction networks: Identifying evolutionarily conserved non-covalent interaction networks across protein families
- First Published: 15 February 2024
Open Access
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KEGG tools for classification and analysis of viral proteins
- First Published: 26 October 2023
Free Access
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Multi-perspectives and challenges in identifying B-cell epitopes
- First Published: 21 September 2023
Open Access
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DichroPipeline: A suite of online and downloadable tools and resources for protein circular dichroism spectroscopic data analyses, interpretations, and their interoperability with other bioinformatics tools and resources
- First Published: 26 October 2023
Open Access
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CC+: A searchable database of validated coiled coils in PDB structures and AlphaFold2 models
- First Published: 28 September 2023
Open Access
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ParSe 2.0: A web tool to identify drivers of protein phase separation at the proteome level
- First Published: 13 August 2023
Open Access
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VirulentPred 2.0: An improved method for prediction of virulent proteins in bacterial pathogens
- First Published: 23 October 2023
Open Access
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PTM-Psi: A python package to facilitate the computational investigation of post-translational modification on protein structures and their impacts on dynamics and functions
- First Published: 30 October 2023
Open Access
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SSDraw: Software for generating comparative protein secondary structure diagrams
- First Published: 13 November 2023
Free Access
free
Hydrophobicity and molecular mass-based separation method for autoantibody discovery from mammalian total cellular proteins
- First Published: 28 August 2023
Open Access
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The antimicrobial peptide database is 20 years old: Recent developments and future directions
- First Published: 11 September 2023
Free Access
free
Flexible protein–protein docking with a multitrack iterative transformer
- First Published: 26 December 2023
Free Access
free
Assessing computational tools for predicting protein stability changes upon missense mutations using a new dataset
- First Published: 11 December 2023
Free Access
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FRAGSITE2: A structure and fragment-based approach for virtual ligand screening
- First Published: 15 December 2023
Free Access
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PBITV3: A robust and comprehensive tool for screening pathogenic proteomes for drug targets and prioritizing vaccine candidates
- First Published: 03 January 2024
Free Access
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TEPCAM: Prediction of T-cell receptor–epitope binding specificity via interpretable deep learning
- First Published: 20 November 2023
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