Proteins: Structure, Function, and Bioinformatics: Vol 80, No 3

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Proteins: Structure, Function, and Bioinformatics

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Proteins: Structure, Function, and Bioinformatics: Volume 80, Issue 3

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Short Communications

Kinetics and thermodynamics of gas diffusion in a NiFe hydrogenase

Distance-dependent atomic knowledge-based force in protein fold recognition

Research Articles

Optimized grid-based protein–protein docking as a global search tool followed by incorporating experimentally derivable restraints

Ligand-induced formation of transient dimers of mammalian 12/15-lipoxygenase: A key to allosteric behavior of this class of enzymes?

On the stoichiometry of Deinococcus radiodurans Dps-1 binding to duplex DNA

Crystal structure of bacteriophage ϕNIT1 zinc peptidase PghP that hydrolyzes γ-glutamyl linkage of bacterial poly-γ-glutamate

Effects of point mutations in pVHL on the binding of HIF-1α

PDB-scale analysis of known and putative ligand-binding sites with structural sketches

Analysis on folding of misgurin using two-dimensional HP model

Novel high-affinity binders of human interferon gamma derived from albumin-binding domain of protein G

A divide-and-conquer approach to determine the Pareto frontier for optimization of protein engineering experiments

Structural studies of a signal peptide in complex with signal peptidase I cytoplasmic domain: The stabilizing effect of membrane-mimetics on the acquired fold

H-bond network optimization in protein–protein complexes: Are all-atom force field scores enough?

Computational protein design with explicit consideration of surface hydrophobic patches

Camps 2.0: Exploring the sequence and structure space of prokaryotic, eukaryotic, and viral membrane proteins

Kinetic consequences of native state optimization of surface-exposed electrostatic interactions in the Fyn SH3 domain†‡§

Thermodynamic analysis of water molecules at the surface of proteins and applications to binding site prediction and characterization

Resolution-adapted recombination of structural features significantly improves sampling in restraint-guided structure calculation

A universal combinatorial design of antibody framework to graft distinct CDR sequences: A bioinformatics approach

Correction(s) for this article

A universal combinatorial design of antibody framework to graft distinct CDR sequences: A bioinformatics approach

Characterization of an alternative low energy fold for bovine α-lactalbumin formed by disulfide bond shuffling†

Geofold: Topology-based protein unfolding pathways capture the effects of engineered disulfides on kinetic stability

Identification of the bile salt binding site on ipad from Shigella flexneri and the influence of ligand binding on IpaD structure

The N-terminal domains of SOCS proteins: A conserved region in the disordered N-termini of SOCS4 and 5

Structure Notes

Crystal structure of hypothetical protein TTHB210, controlled by the σE/anti-σE regulatory system in Thermus thermophilus HB8, reveals a novel homodecamer

Structural analysis of Escherichia coli C5 protein

Solution structure of the splicing factor motif of the human Prp18 protein

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Kinetic consequences of native state optimization of surface-exposed electrostatic interactions in the Fyn SH3 domain ^†^‡^§

Characterization of an alternative low energy fold for bovine α-lactalbumin formed by disulfide bond shuffling ^†

Crystal structure of hypothetical protein TTHB210, controlled by the σ^E/anti-σ^E regulatory system in Thermus thermophilus HB8, reveals a novel homodecamer