Proteins: Structure, Function, and Bioinformatics: Vol 80, No 2

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Proteins: Structure, Function, and Bioinformatics

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Proteins: Structure, Function, and Bioinformatics: Volume 80, Issue 2

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Short Communications

How noise in force fields can affect the structural refinement of protein models?

Research Articles

Calculation of rate spectra from noisy time series data

Template-based protein structure modeling using TASSERVMT

The role of atomic level steric effects and attractive forces in protein folding

Prediction of protein secondary structure from circular dichroism using theoretically derived spectra

Correction(s) for this article

Prediction of protein secondary structure from circular dichroism using theoretically derived spectra

Molecular dynamics simulation of conformational heterogeneity in transportin 1

A structural and functional dissection of the cardiac stress response factor MS1†‡§

STITCHER: Dynamic assembly of likely amyloid and prion β-structures from secondary structure predictions

Identifying continuous pores in protein structures with PROPORES by computational repositioning of gating residues

Protein loop closure using orientational restraints from NMR data

Structural characterization by nuclear magnetic resonance of the impact of phosphorylation in the proline-rich region of the disordered Tau protein†

Super folds, networks, and barriers

Illuminating the early signaling pathway of a fungal light-oxygen-voltage photoreceptor

Predicting nucleic acid binding interfaces from structural models of proteins

The dual role of fragments in fragment-assembly methods for de novo protein structure prediction

Bihelix: Towards de novo structure prediction of an ensemble of G-protein coupled receptor conformations

Structural and binding studies of the C-terminal domains of yeast TFIIF subunits Tfg1 and Tfg2 †

Representing and comparing protein folds and fold families using three-dimensional shape-density representations

A temperature-dependent conformational change of NADH oxidase from Thermus thermophilus HB8 †

Ensemble modeling of protein disordered states: Experimental restraint contributions and validation

Multiple drugs and multiple targets: An analysis of the electrostatic determinants of binding between non-nucleoside HIV-1 reverse transcriptase inhibitors and variants of HIV-1 RT

Minimal ensembles of side chain conformers for modeling protein–protein interactions

Temperature-dependent study reveals that dynamics of hydrophobic residues plays an important functional role in the mitochondrial Tim9–Tim10 complex

Longer simulations sample larger subspaces of conformations while maintaining robust mechanisms of motion

Cofactor-binding sites in proteins of deviating sequence: Comparative analysis and clustering in torsion angle, cavity, and fold space

Structure Notes

Structural characterization of human Uch37

Structure of the DNA-bound T-box domain of human TBX1, a transcription factor associated with the DiGeorge syndrome

Crystal structure of homoisocitrate dehydrogenase from Schizosaccharomyces pombe

Solution NMR structure of BT_0084, a conjugative transposon lipoprotein from Bacteroides thetaiotamicron

Solution NMR structure of Asl3597 from Nostoc sp. PCC7120, the first structure from protein domain family PF12095, reveals a novel fold

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Template-based protein structure modeling using TASSER^VMT

A structural and functional dissection of the cardiac stress response factor MS1 ^†^‡^§

Structural characterization by nuclear magnetic resonance of the impact of phosphorylation in the proline-rich region of the disordered Tau protein ^†

Structural and binding studies of the C-terminal domains of yeast TFIIF subunits Tfg1 and Tfg2 ^†

A temperature-dependent conformational change of NADH oxidase from Thermus thermophilus HB8 ^†