Structural analysis of Escherichia coli C5 protein
Jae-Sun Shin
Department of Chemistry, KAIST, 373-1 Guseong-dong, Yuseong-gu, Daejeon 305-701, Korea
Biomedical Proteomics Research Center, KRIBB, 125 Gwahak-ro, Yuseong-gu, Daejeon 305-806, Korea
Search for more papers by this authorKwang-Sun Kim
Systems and Synthetic Biology Research Center, KRIBB, 125 Gwahak-ro, Yuseong-gu, Daejeon 305-806, Korea
Biosystems and Bioengineering Program, University of Science and Technology (UST), Daejeon 305-350, Korea
Search for more papers by this authorKyoung-Seok Ryu
Division of Magnetic Resonance Research, Korea Basic Science Institute, Yangcheong-Ri 804-1, Ochang-Eup, Cheongwon-Gun, Chungbuk 363-883, Korea
Search for more papers by this authorKook Han
Department of Chemistry, KAIST, 373-1 Guseong-dong, Yuseong-gu, Daejeon 305-701, Korea
Search for more papers by this authorYounghoon Lee
Department of Chemistry, KAIST, 373-1 Guseong-dong, Yuseong-gu, Daejeon 305-701, Korea
Search for more papers by this authorCorresponding Author
Byong-Seok Choi
Department of Chemistry, KAIST, 373-1 Guseong-dong, Yuseong-gu, Daejeon 305-701, Korea
Department of Chemistry, KAIST, 373-1 Guseong-dong, Yuseong-gu, Daejeon 305-701, Korea===Search for more papers by this authorJae-Sun Shin
Department of Chemistry, KAIST, 373-1 Guseong-dong, Yuseong-gu, Daejeon 305-701, Korea
Biomedical Proteomics Research Center, KRIBB, 125 Gwahak-ro, Yuseong-gu, Daejeon 305-806, Korea
Search for more papers by this authorKwang-Sun Kim
Systems and Synthetic Biology Research Center, KRIBB, 125 Gwahak-ro, Yuseong-gu, Daejeon 305-806, Korea
Biosystems and Bioengineering Program, University of Science and Technology (UST), Daejeon 305-350, Korea
Search for more papers by this authorKyoung-Seok Ryu
Division of Magnetic Resonance Research, Korea Basic Science Institute, Yangcheong-Ri 804-1, Ochang-Eup, Cheongwon-Gun, Chungbuk 363-883, Korea
Search for more papers by this authorKook Han
Department of Chemistry, KAIST, 373-1 Guseong-dong, Yuseong-gu, Daejeon 305-701, Korea
Search for more papers by this authorYounghoon Lee
Department of Chemistry, KAIST, 373-1 Guseong-dong, Yuseong-gu, Daejeon 305-701, Korea
Search for more papers by this authorCorresponding Author
Byong-Seok Choi
Department of Chemistry, KAIST, 373-1 Guseong-dong, Yuseong-gu, Daejeon 305-701, Korea
Department of Chemistry, KAIST, 373-1 Guseong-dong, Yuseong-gu, Daejeon 305-701, Korea===Search for more papers by this author
REFERENCES
- 1 Frank DN,Pace NR. Ribonuclease P: unity and diversity in a tRNA processing ribozyme. Annu Rev Biochem 1998; 67: 153–180.
- 2 Haas ES,Banta AB,Harris JK,Pace NR,Brown JW. Structure and evolution of ribonuclease P RNA in Gram-positive bacteria. Nucleic Acids Res 1996; 24: 4775–4782.
- 3 Buck AH,Dalby AB,Poole AW,Kazantsev AV,Pace NR. Protein activation of a ribozyme: the role of bacterial RNase P protein. EMBO J 2005; 24: 3360–3368.
- 4 Park BH,Choi YN,Park JW,Sim S,Gil MC,Kim S,Kim M,Lee Y. Expression of C5 protein, the protein component of Escherichia coli RNase P, from the tac promoter. Mol Cells 1998; 8: 96–100.
- 5 Delaglio F,Grzesiek S,Vuister GW,Zhu G,Pfeifer J,Bax A. NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J Biomol NMR 1995; 6: 277–293.
- 6 Goddad TD,Kneller DG. SPARKY 3, 2004.
- 7 Cornilescu G,Delaglio F,Bax A. Protein backbone angle restraints from searching a database for chemical shift and sequence homology. J Biomol NMR 1999; 13: 289–302.
- 8 Herrmann T,Guntert P,Wuthrich K. Protein NMR structure determination with automated NOE-identification in the NOESY spectra using the new software ATNOS. J Biomol NMR 2002; 24: 171–189.
- 9 Linge JP,Williams MA,Spronk CA,Bonvin AM,Nilges M. Refinement of protein structures in explicit solvent. Proteins 2003; 50: 496–506.
- 10 Laskowski RA,Rullmannn JA,MacArthur MW,Kaptein R,Thornton JM. AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR. J Biomol NMR 1996; 8: 477–486.
- 11 Pettersen EF,Goddard TD,Huang CC,Couch GS,Greenblatt DM,Meng EC,Ferrin TE. UCSF Chimera—a visualization system for exploratory research and analysis. J Comput Chem 2004; 25: 1605–1612.
- 12 Vioque A,Altman S. Affinity chromatography with an immobilized RNA enzyme. Proc Natl Acad Sci USA 1986; 83: 5904–5908.
- 13 Choe HW,Jeong DG,Park JH,Schlesinger R,Labahn J,Hofmann KP,Buldt G. Preliminary X-ray characterization of the ribonuclease P (C5 protein) from Escherichia coli: expression, crystallization and cryoconditions. Acta Crystallogr D Biol Crystallogr 2003; 59 (Part 2): 350–352.
- 14 Stams T,Niranjanakumari S,Fierke CA,Christianson DW. Ribonuclease P protein structure: evolutionary origins in the translational apparatus. Science 1998; 280: 752–755.
- 15 Spitzfaden C,Nicholson N,Jones JJ,Guth S,Lehr R,Prescott CD,Hegg LA,Eggleston DS. The structure of ribonuclease P protein from Staphylococcus aureus reveals a unique binding site for single-stranded RNA. J Mol Biol 2000; 295: 105–115.
- 16 Kazantsev AV,Krivenko AA,Harrington DJ,Carter RJ,Holbrook SR,Adams PD,Pace NR. High-resolution structure of RNase P protein from Thermotoga maritima. Proc Natl Acad Sci USA 2003; 100: 7497–7502.
- 17 Niranjanakumari S,Stams T,Crary SM,Christianson DW,Fierke CA. Protein component of the ribozyme ribonuclease P alters substrate recognition by directly contacting precursor tRNA. Proc Natl Acad Sci USA 1998; 95: 15212–15217.
- 18 Baer MF,Wesolowski D,Altman S. Characterization in vitro of the defect in a temperature-sensitive mutant of the protein subunit of RNase P from Escherichia coli. J Bacteriol 1989; 171: 6862–6866.
- 19 Gopalan V,Baxevanis AD,Landsman D,Altman S. Analysis of the functional role of conserved residues in the protein subunit of ribonuclease P from Escherichia coli. J Mol Biol 1997; 267: 818–829.
- 20 Koutmou KS,Zahler NH,Kurz JC,Campbell FE,Harris ME,Fierke CA. Protein-precursor tRNA contact leads to sequence-specific recognition of 5′ leaders by bacterial ribonuclease P. J Mol Biol 2010; 396: 195–208.
Citing Literature
