Proteins: Structure, Function, and Bioinformatics: Vol 78, No 2

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Proteins: Structure, Function, and Bioinformatics

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Proteins: Structure, Function, and Bioinformatics: Volume 78, Issue 2

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Research Articles

Application of nonlinear dimensionality reduction to characterize the conformational landscape of small peptides

Large-scale analysis of secondary structure changes in proteins suggests a role for disorder-to-order transitions in nucleotide binding proteins

Efficient identification of near-native conformations in ab initio protein structure prediction using structural profiles

Combining crystallography and molecular dynamics: The case of Schistosoma mansoni phospholipid glutathione peroxidase

Modeling the possible conformations of the extracellular loops in G-protein-coupled receptors

Structure of the heme/hemoglobin outer membrane receptor ShuA from Shigella dysenteriae: Heme binding by an induced fit mechanism

Structural and functional studies of the potent anti-HIV chemokine variant P2-RANTES

RigidFinder: A fast and sensitive method to detect rigid blocks in large macromolecular complexes

Conformational selection and collagenolysis in Type III collagen

Rational design of amyloid β peptide–binding proteins: Pseudo-Aβ β-sheet surface presented in green fluorescent protein binds tightly and preferentially to structured Aβ

Structural features of the Nostoc punctiforme debranching enzyme reveal the basis of its mechanism and substrate specificity

Crystal structure of a trimeric archaeal adenylate kinase from the mesophile Methanococcus maripaludis with an unusually broad functional range and thermal stability

Identification, analysis, and prediction of protein ubiquitination sites

Dissecting the molecular mechanism of drosophila odorant receptors through activity modeling and comparative analysis

PIE—Efficient filters and coarse grained potentials for unbound protein–protein docking

Shape and evolution of thermostable protein structure

RNA polymerase II flexibility during translocation from normal mode analysis

The energetics of the acetylation switch in p53-mediated transcriptional activation

Modeling G protein-coupled receptors for structure-based drug discovery using low-frequency normal modes for refinement of homology models: Application to H3 antagonists

Structure Notes

Solution structure and calcium binding of protein SSO6904 from the hyperthermophilic archaeon Sulfolobus solfataricus

Structural insights into Staphylococcus aureus enoyl-ACP reductase (FabI), in complex with NADP and triclosan

Structural studies on cytosolic domain of magnesium transporter MgtE from Enterococcus faecalis†

Crystal structure of the DNA gyrase GyrA N-terminal domain from Mycobacterium tuberculosis

Structure of hyperthermophilic endocellulase from Pyrococcus horikoshii†

Erratum

Correction to the article “Crystal Structure of a Ferredoxin Reductase for the CYP199A2 System from Rhodopseudomonas palustris”

This article corrects the following:

Crystal structure of a ferredoxin reductase for the CYP199A2 system from Rhodopseudomonas palustris

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Structural studies on cytosolic domain of magnesium transporter MgtE from Enterococcus faecalis^†

Structure of hyperthermophilic endocellulase from Pyrococcus horikoshii^†