Journal list menu

• 
  Issue

  Proteins: Structure, Function, and Bioinformatics: Volume 78, Issue 1

  Special Issue in Memoriam of Angel R. Ortiz

  Pages: iii-viii, 1-221

  January 2010

Previous Issue|Next Issue

Export Citation(s)Download PDF(s)

Export Citations

Format

Plain Text

RIS (ProCite, Reference Manager)

EndNote

BibTex

Medlars

RefWorks

Type of import

Citation file or direct import

Indirect import or copy/paste

Cancel

Next

< Go back

Citation HelpExport

Download PDFs

Cancel

Item limit reached

Download (.zip)

In Memoriam

no

In memoriam^†

David Abia,  Ugo Bastolla,  Pablo Chacón,  Carme Fábrega,  Federico Gago,  Antonio Morreale,  Anna Tramontano, 

• Pages: iii-viii
• First Published: 27 November 2009

• First Page
• Full text
• PDF
• References
• Request permissions

Research Articles

no

Kinetic and binding effects in peptide substrate selectivity of matrix metalloproteinase-2: Molecular dynamics and QM/MM calculations^†

Natalia Díaz,  Dimas Suárez,  Ernesto Suárez, 

• Pages: 1-11
• First Published: 27 November 2009

• Abstract
• Full text
• PDF
• References
• Request permissions

no

N-terminal strands of filamin Ig domains act as a conformational switch under biological forces^†

Barry A. Kesner,  Feng Ding,  Brenda R. Temple,  Nikolay V. Dokholyan, 

• Pages: 12-24
• First Published: 27 November 2009

• Abstract
• Full text
• PDF
• References
• Request permissions

no

Optimal protein-RNA area, OPRA: A propensity-based method to identify RNA-binding sites on proteins^†

Laura Pérez-Cano,  Juan Fernández-Recio, 

• Pages: 25-35
• First Published: 27 November 2009

• Abstract
• Full text
• PDF
• References
• Request permissions

no

Protein–protein interactions at an enzyme–substrate interface: Characterization of transient reaction intermediates throughout a full catalytic cycle of Escherichia coli thioredoxin reductase^{† ‡}

Ana Negri,  David Rodríguez-Larrea,  Esther Marco,  Antonio Jiménez-Ruiz,  José M. Sánchez-Ruiz,  Federico Gago, 

• Pages: 36-51
• First Published: 27 November 2009

• Abstract
• Full text
• PDF
• References
• Request permissions

no

Comparison of DNA binding across protein superfamilies^†

Bruno Contreras-Moreira,  Javier Sancho,  Vladimir Espinosa Angarica, 

• Pages: 52-62
• First Published: 27 November 2009

• Abstract
• Full text
• PDF
• References
• Request permissions

no

Quantitative modeling of peptide binding to TAP using support vector machine^†

Carmen M. Diez-Rivero,  Bernardo Chenlo,  Pilar Zuluaga,  Pedro A. Reche, 

• Pages: 63-72
• First Published: 27 November 2009

• Abstract
• Full text
• PDF
• References
• Request permissions

no

A simple simulation model can reproduce the thermodynamic folding intermediate of apoflavodoxin^{† ‡}

María Larriva,  Lidia Prieto,  Pierpaolo Bruscolini,  Antonio Rey, 

• Pages: 73-82
• First Published: 27 November 2009

• Abstract
• Full text
• PDF
• References
• Request permissions

no

Protein flexibility from discrete molecular dynamics simulations using quasi-physical potentials^{† ‡}

Agustí Emperador,  Tim Meyer,  Modesto Orozco, 

• Pages: 83-94
• First Published: 27 November 2009

• Abstract
• Full text
• PDF
• References
• Request permissions

no

Present and future challenges and limitations in protein–protein docking^†

Carles Pons,  Solène Grosdidier,  Albert Solernou,  Laura Pérez-Cano,  Juan Fernández-Recio, 

• Pages: 95-108
• First Published: 27 November 2009

• Abstract
• Full text
• PDF
• References
• Request permissions

no

Structural domain–domain interactions: Assessment and comparison with protein–protein interaction data to improve the interactome^†

C. Prieto,  J. De Las Rivas, 

• Pages: 109-117
• First Published: 27 November 2009

• Abstract
• Full text
• PDF
• References
• Request permissions

no

Comparison of structure-based and threading-based approaches to protein functional annotation^†

Michal Brylinski,  Jeffrey Skolnick, 

• Pages: 18-134
• First Published: 27 November 2009

• Abstract
• Full text
• PDF
• References
• Request permissions

no

Comparative binding energy analysis for binding affinity and target selectivity prediction^{† ‡}

Stefan Henrich,  Isabella Feierberg,  Ting Wang,  Niklas Blomberg,  Rebecca C. Wade, 

• Pages: 135-153
• First Published: 27 November 2009

• Abstract
• Full text
• PDF
• References
• Request permissions

no

Substrate uptake and protein stability relationship in mammalian histidine decarboxylase^†

A. Pino-Ángeles,  A. Morreale,  A. Negri,  F. Sánchez-Jiménez,  A. A. Moya-García, 

• Pages: 154-161
• First Published: 27 November 2009

• Abstract
• Full text
• PDF
• References
• Request permissions

no

gCOMBINE: A graphical user interface to perform structure-based comparative binding energy (COMBINE) analysis on a set of ligand-receptor complexes^†

Rubén Gil-Redondo,  Javier Klett,  Federico Gago,  Antonio Morreale, 

• Pages: 162-172
• First Published: 27 November 2009

• Abstract
• Full text
• PDF
• References
• Request permissions

no

A perturbative view of protein structural variation^†

Julián Echave,  Francisco M. Fernández, 

• Pages: 173-180
• First Published: 27 November 2009

• Abstract
• Full text
• PDF
• References
• Request permissions

no

Quantifying the evolutionary divergence of protein structures: The role of function change and function conservation^†

Alberto Pascual-García,  David Abia,  Raúl Méndez,  Gonzalo S. Nido,  Ugo Bastolla, 

• Pages: 181-196
• First Published: 27 November 2009

• Abstract
• Full text
• PDF
• References
• Request permissions

no

GPCR 3D homology models for ligand screening: Lessons learned from blind predictions of adenosine A2a receptor complex^†

Vsevolod Katritch,  Manuel Rueda,  Polo Chun-Hung Lam,  Mark Yeager,  Ruben Abagyan, 

• Pages: 197-211
• First Published: 27 November 2009

• Abstract
• Full text
• PDF
• References
• Request permissions

no

Modularity of intrinsic disorder in the human proteome^†

Melissa M. Pentony,  David T. Jones, 

• Pages: 212-221
• First Published: 27 November 2009

• Abstract
• Full text
• PDF
• References
• Request permissions

Sign up for email alerts

Enter your email to receive alerts when new articles and issues are published.

Email address*

Please select your location and accept the terms of use.

Country or location*

Open this select menuAfghanistanÅland IslandsAlbaniaAlgeriaAmerican SamoaAndorraAngolaAnguillaAntarcticaAntigua And BarbudaArgentinaArmeniaArubaAustraliaAustriaAzerbaijanBahamasBahrainBangladeshBarbadosBelarusBelgiumBelizeBeninBermudaBhutanBoliviaBonaire, Sint Eustatius And SabaBosnia And HerzegovinaBotswanaBouvet IslandBrazilBritish Indian Ocean TerritoryBrunei DarussalamBulgariaBurkina FasoBurundiCambodiaCameroonCanadaCape VerdeCayman IslandsCentral African RepublicChadChileChinaChristmas IslandCocos (keeling) IslandsColombiaComorosCongoCongo, The Democratic Republic Of TheCook IslandsCosta RicaCôte D'ivoireCroatiaCubaCuraçaoCyprusCzech RepublicDenmarkDjiboutiDominicaDominican RepublicEcuadorEgyptEl SalvadorEquatorial GuineaEritreaEstoniaEthiopiaFalkland Islands (malvinas)Faroe IslandsFijiFinlandFranceFrench GuianaFrench PolynesiaFrench Southern TerritoriesGabonGambiaGeorgiaGermanyGhanaGibraltarGreeceGreenlandGrenadaGuadeloupeGuamGuatemalaGuernseyGuineaGuinea-bissauGuyanaHaitiHeard Island And Mcdonald IslandsHoly See (vatican City State)HondurasHong KongHungaryIcelandIndiaIndonesiaIran, Islamic Republic OfIraqIrelandIsle Of ManIsraelItalyJamaicaJapanJerseyJordanKazakhstanKenyaKiribatiKorea, Democratic People's Republic OfKorea, Republic OfKosovo, Republic OfKuwaitKyrgyzstanLao People's Democratic RepublicLatviaLebanonLesothoLiberiaLibyan Arab JamahiriyaLiechtensteinLithuaniaLuxembourgMacaoMacedonia, The Former Yugoslav Republic OfMadagascarMalawiMalaysiaMaldivesMaliMaltaMarshall IslandsMartiniqueMauritaniaMauritiusMayotteMexicoMicronesia, Federated States OfMoldova, Republic OfMonacoMongoliaMontenegroMontserratMoroccoMozambiqueMyanmarNamibiaNauruNepalNetherlandsNetherlands AntillesNew CaledoniaNew ZealandNicaraguaNigerNigeriaNiueNorfolk IslandNorthern Mariana IslandsNorwayOmanPakistanPalauPalestinian Territory, OccupiedPanamaPapua New GuineaParaguayPeruPhilippinesPitcairnPolandPortugalPuerto RicoQatarReunionRomaniaRussian FederationRwandaSaint BarthélemySaint HelenaSaint Kitts And NevisSaint LuciaSaint MartinSaint Pierre And MiquelonSaint Vincent And The GrenadinesSamoaSan MarinoSao Tome And PrincipeSaudi ArabiaSenegalSerbiaSeychellesSierra LeoneSingaporeSint MaartenSlovakiaSloveniaSolomon IslandsSomaliaSouth AfricaSouth Georgia And The South Sandwich IslandsSouth SudanSpainSri LankaSudanSurinameSvalbard And Jan MayenSwazilandSwedenSwitzerlandSyrian Arab RepublicTaiwanTajikistanTanzania, United Republic OfThailandTimor-lesteTogoTokelauTongaTrinidad And TobagoTunisiaTürkiyeTurkmenistanTurks And Caicos IslandsTuvaluUgandaUkraineUnited Arab EmiratesUnited KingdomUnited StatesUnited States Minor Outlying IslandsUruguayUzbekistanVanuatuVenezuela, Bolivarian Republic OfViet NamVirgin Islands, BritishVirgin Islands, U.s.Wallis And FutunaWestern SaharaYemenZambiaZimbabwe

I consent to Wiley Online Library’s Terms of Use and processing of my personal data as disclosed in Wiley’s Privacy Policy.*I consent to my personal information being transferred outside of the People’s Republic of China as laid out in Wiley’s Privacy Policy.*(Optional) I consent to special offers, newsletter & promotions from Wiley. See Privacy Policy for more details.

Sign up to alerts

Continue

Tools

• Submit an article
• Browse free sample issue

• Journal Metrics

• Subscribe to this journal

More from this journal

• Supporting Information
• Structure Notes
• Other Resources
• Virtual Issue for Biophysical Society 61st Annual Meeting
• Video Abstracts
• SARS-CoV-2 / COVID-19 collection
• Call for Papers