Proteins: Structure, Function, and Bioinformatics: Vol 77, No 4

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Proteins: Structure, Function, and Bioinformatics: Volume 77, Issue 4

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Short Communication

Crystal structures of Lys-63-linked tri- and di-ubiquitin reveal a highly extended chain architecture

Research Articles

Structure, dynamics, and interactions of jacalin. Insights from molecular dynamics simulations examined in conjunction with results of X-ray studies

Improved prediction of protein side-chain conformations with SCWRL4

Identification of specificity and promiscuity of PDZ domain interactions through their dynamic behavior

Elucidating the exact role of engineered CRABPII residues for the formation of a retinal protonated Schiff base

On the accuracy of inferring energetic coupling between distant sites in protein families from evolutionary imprints: Illustrations using lattice model

Structural understanding of stabilization patterns in engineered bispecific Ig-like antibody molecules

Ligand unbinding from the estrogen receptor: A computational study of pathways and ligand specificity

Induction of the tetracycline repressor: Characterization by molecular-dynamics simulations

Crystal structure of a ferredoxin reductase for the CYP199A2 system from Rhodopseudomonas palustris

Correction(s) for this article

Correction to the article “Crystal Structure of a Ferredoxin Reductase for the CYP199A2 System from Rhodopseudomonas palustris”

Robustness and generalization of structure-based models for protein folding and function

Cancer-associated mutations are preferentially distributed in protein kinase functional sites

A designed chimeric cyanovirin-N homolog lectin: Structure and molecular basis of sucrose binding

Challenging a paradigm: Theoretical calculations of the protonation state of the Cys25-His159 catalytic diad in free papain†

A comparative analysis of the equilibrium dynamics of a designed protein inferred from NMR, X-ray, and computations

Structural insights into recognition of β2-glycoprotein I by the lipoprotein receptors

Free-energy function based on an all-atom model for proteins

Thermodynamic and structural analysis of highly stabilized BPTIs by single and double mutations

ATP conformations and ion binding modes in the active site of anthrax edema factor: A computational analysis

Molecular insights into substrate specificity of prostate specific antigen through structural modeling

Structure Notes

Crystal structure of a putative methylmalonyl-coenzyme a epimerase from Thermoanaerobacter tengcongensis at 2.0 Å resolution

Solution structure of the fourth FF domain of yeast Prp40 splicing factor

The dimeric structure of Sulfolobus solfataricus thioredoxin A2 and the basis of its thermostability

Structure of the EMMPRIN N-terminal domain 1: Dimerization via β-strand swapping

Erratum

Correction to the article “Non-native α-helix formation is not necessary for folding of lipocalin: Comparison of burst-phase folding between tear lipocalin and β-lactoglobulin”

This article corrects the following:

Non-native α-helix formation is not necessary for folding of lipocalin: Comparison of burst-phase folding between tear lipocalin and β-lactoglobulin

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Challenging a paradigm: Theoretical calculations of the protonation state of the Cys25-His159 catalytic diad in free papain ^†