Special Issue on Tools for Protein Science: Protein Science: Vol 27, No 1

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Authors Melanie Dietrich, Christina Harprecht and Thilo Stehle on their recently published Protein Science paper entitled "The bulky and the sweet: How neutralizing antibodies and glycan receptors compete for virus binding." Read the paper here

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Protein Science: Volume 27, Issue 1

Special Issue on Tools for Protein Science

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Editorial

Tools for protein science

Tools for Protein Science

DichroMatch at the protein circular dichroism data bank (DM@PCDDB): A web-based tool for identifying protein nearest neighbors using circular dichroism spectroscopy

UCSF ChimeraX: Meeting modern challenges in visualization and analysis

Xplor-NIH for molecular structure determination from NMR and other data sources

Ensemblator v3: Robust atom-level comparative analyses and classification of protein structure ensembles

Single-particle cryo-EM—Improved ab initio 3D reconstruction with SIMPLE/PRIME

Visualizing correlated motion with HDBSCAN clustering

MMM: A toolbox for integrative structure modeling

Molstack—Interactive visualization tool for presentation, interpretation, and validation of macromolecules and electron density maps

New tools and functions in data-out activities at Protein Data Bank Japan (PDBj)

CCBuilder 2.0: Powerful and accessible coiled-coil modeling

Improvements to the APBS biomolecular solvation software suite

PDBsum: Structural summaries of PDB entries

Clustal Omega for making accurate alignments of many protein sequences

Prediction of nearest neighbor effects on backbone torsion angles and NMR scalar coupling constants in disordered proteins

Guidelines for using Bsoft for high resolution reconstruction and validation of biomolecular structures from electron micrographs

Dockground: A comprehensive data resource for modeling of protein complexes

Interactive comparison and remediation of collections of macromolecular structures

The SubCons webserver: A user friendly web interface for state-of-the-art subcellular localization prediction

Forty years of collaborative computational crystallography

Automating tasks in protein structure determination with the clipper python module

Estimate your dose: RADDOSE-3D

AnchorQuery: Rapid online virtual screening for small-molecule protein–protein interaction inhibitors

The human protein atlas: A spatial map of the human proteome

Integrative structure modeling with the Integrative Modeling Platform

Web-accessible molecular modeling with Rosetta: The Rosetta Online Server that Includes Everyone (ROSIE)

Scipion web tools: Easy to use cryo-EM image processing over the web

PixelDB: Protein–peptide complexes annotated with structural conservation of the peptide binding mode

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PixelDB: Protein–peptide complexes annotated with structural conservation of the peptide binding mode

OPUS-CSF: A C-atom-based scoring function for ranking protein structural models

MolProbity: More and better reference data for improved all-atom structure validation

RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education

Prediction of protein disorder based on IUPred

Computational design of membrane proteins using RosettaMembrane

%MinMax: A versatile tool for calculating and comparing synonymous codon usage and its impact on protein folding

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