Proteins: Structure, Function, and Bioinformatics: Vol 82, No 10

I consent to Wiley Online Library’s Terms of Use and processing of my personal data as disclosed in Wiley’s Privacy Policy.I consent to my personal information being transferred outside of the People’s Republic of China as laid out in Wiley’s Privacy Policy.*(Optional) I consent to special offers, newsletter & promotions from Wiley. See Privacy Policy for more details.

Tools

Journal Metrics

Subscribe to this journal

Proteins: Structure, Function, and Bioinformatics

Journal list menu

Tools

Follow journal

Proteins: Structure, Function, and Bioinformatics: Volume 82, Issue 10

Download PDFs

Articles

Structural dynamics of the monoamine transporter homolog LeuT from accelerated conformational sampling and channel analysis

Insights into a highly conserved network of hydrogen bonds in the agonist binding site of nicotinic acetylcholine receptors: A structural and theoretical study

Burial of nonpolar surface area and thermodynamic stabilization of globins as a function of chain elongation

The recognition of membrane-bound PtdIns3P by PX domains

The p66 immature precursor of HIV-1 reverse transcriptase

Glucose oxidase from Penicillium amagasakiense: Characterization of the transition state of its denaturation from molecular dynamics simulations

The solution structure of full-length dodecameric MCM by SANS and molecular modeling

How the folding rates of two- and multistate proteins depend on the amino acid properties

Improving the orientation-dependent statistical potential using a reference state

Exploring the free energy landscape of a model β-hairpin peptide and its isoform

Network mapping among the functional domains of Chikungunya virus nonstructural proteins

Exploring the early stages of the pH-induced conformational change of influenza hemagglutinin

Binding site multiplicity with fatty acid ligands: Implications for the regulation of PKR kinase autophosphorylation with palmitate

De novo inference of protein function from coarse-grained dynamics

RBRDetector: Improved prediction of binding residues on RNA-binding protein structures using complementary feature- and template-based strategies

Discovery of binding proteins for a protein target using protein–protein docking-based virtual screening

Temperature-accelerated molecular dynamics gives insights into globular conformations sampled in the free state of the AC catalytic domain

A detailed representation of electrostatic energy in prediction of sequence and pH dependence of protein stability

A multiscale model for simulating binding kinetics of proteins with flexible linkers

The modular structure of ThDP-dependent enzymes

Structure-based simulations reveal concerted dynamics of GPCR activation

Specific potassium ion interactions facilitate homocysteine binding to betaine-homocysteine S-methyltransferase

Direct prediction of profiles of sequences compatible with a protein structure by neural networks with fragment-based local and energy-based nonlocal profiles

Predicting the side-chain dihedral angle distributions of nonpolar, aromatic, and polar amino acids using hard sphere models

Euclidean sections of protein conformation space and their implications in dimensionality reduction

Functional evolution of PLP-dependent enzymes based on active-site structural similarities

Molecular simulations of β-lactoglobulin complexed with fatty acids reveal the structural basis of ligand affinity to internal and possible external binding sites

Increasing stability of antibody via antibody engineering: Stability engineering on an anti-hVEGF

Effectiveness and limitations of local structural entropy optimization in the thermal stabilization of mesophilic and thermophilic adenylate kinases

Cytotoxicity of the Vibrio vulnificus MARTX toxin Effector DUF5 is linked to the C2A Subdomain

Structures of mesophilic and extremophilic citrate synthases reveal rigidity and flexibility for function

Extracting representative structures from protein conformational ensembles

A multiscale approach to predicting affinity changes in protein–protein interfaces

Analysis of the linker region joining the adenylation and carrier protein domains of the modular nonribosomal peptide synthetases

Crystal structure of BinB: A receptor binding component of the binary toxin from Lysinibacillus sphaericus

Hot-spot analysis to dissect the functional protein–protein interface of a tRNA-modifying enzyme

Structural insights into the stabilization of active, tetrameric DszC by its C-terminus

Molecular dynamics simulations of the auxin-binding protein 1 in complex with indole-3-acetic acid and naphthalen-1-acetic acid

Geometrical comparison of two protein structures using Wigner-D functions

Computational design of protein antigens that interact with the CDR H3 loop of HIV broadly neutralizing antibody 2F5

Computational identification of post-translational modification-based nuclear import regulations by characterizing nuclear localization signal-import receptor interaction

Expansion of the APC superfamily of secondary carriers

Redesigning the type II' β-turn in green fluorescent protein to type I': Implications for folding kinetics and stability

Multiple polymer architectures of human polyhomeotic homolog 3 sterile alpha motif

Conformational transitions driven by pyridoxal-5′-phosphate uptake in the psychrophilic serine hydroxymethyltransferase from Psychromonas ingrahamii

Multivariate sequence analysis reveals additional function impacting residues in the SDR superfamily

Crystal structure of a feruloyl esterase belonging to the tannase family: A disulfide bond near a catalytic triad

Structure Notes

Crystal structure of the secreted protein HP1454 from the human pathogen Helicobacter pylori

Crystal structure of the C-terminal domain of mouse TLR9

Novel RNA recognition motif domain in the cytoplasmic polyadenylation element binding protein 3

Erratum

Specificity of a protein–protein interface: Local dynamics direct substrate recognition of effector caspases

This article corrects the following:

Specificity of a protein–protein interface: Local dynamics direct substrate recognition of effector caspases

Sign up for email alerts

Tools

More from this journal