Crystal structure of BinB: A receptor binding component of the binary toxin from Lysinibacillus sphaericus
Kanokporn Srisucharitpanit
Institute of Molecular Biosciences, Mahidol University, Salaya, Phuttamonthon, Nakhon Pathom, 73170 Thailand
Faculty of Allied Health Science, Burapha University, Saensook, Muang District, Chon Buri, 20131 Thailand
Search for more papers by this authorMin Yao
Faculty of Advanced Life Sciences, Hokkaido University, Sapporo, 060-0810 Japan
Search for more papers by this authorBoonhiang Promdonkoy
National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, 113 Pahonyothin Road, Khlong Nueng, Khlong Luang, Pathum Thani, 12120 Thailand
Search for more papers by this authorSarin Chimnaronk
Institute of Molecular Biosciences, Mahidol University, Salaya, Phuttamonthon, Nakhon Pathom, 73170 Thailand
Search for more papers by this authorCorresponding Author
Isao Tanaka
Faculty of Advanced Life Sciences, Hokkaido University, Sapporo, 060-0810 Japan
Correspondence to: Isao Tanaka, Faculty of Advanced Life Sciences, Hokkaido University, Sapporo 060–0810, Japan. E-mail: [email protected] and Panadda Boonserm, Institute of Molecular Biosciences, Mahidol University, Salaya, Phuttamonthon, Nakhon Pathom 73170, Thailand. E-mail: [email protected]Search for more papers by this authorCorresponding Author
Panadda Boonserm
Institute of Molecular Biosciences, Mahidol University, Salaya, Phuttamonthon, Nakhon Pathom, 73170 Thailand
Correspondence to: Isao Tanaka, Faculty of Advanced Life Sciences, Hokkaido University, Sapporo 060–0810, Japan. E-mail: [email protected] and Panadda Boonserm, Institute of Molecular Biosciences, Mahidol University, Salaya, Phuttamonthon, Nakhon Pathom 73170, Thailand. E-mail: [email protected]Search for more papers by this authorKanokporn Srisucharitpanit
Institute of Molecular Biosciences, Mahidol University, Salaya, Phuttamonthon, Nakhon Pathom, 73170 Thailand
Faculty of Allied Health Science, Burapha University, Saensook, Muang District, Chon Buri, 20131 Thailand
Search for more papers by this authorMin Yao
Faculty of Advanced Life Sciences, Hokkaido University, Sapporo, 060-0810 Japan
Search for more papers by this authorBoonhiang Promdonkoy
National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, 113 Pahonyothin Road, Khlong Nueng, Khlong Luang, Pathum Thani, 12120 Thailand
Search for more papers by this authorSarin Chimnaronk
Institute of Molecular Biosciences, Mahidol University, Salaya, Phuttamonthon, Nakhon Pathom, 73170 Thailand
Search for more papers by this authorCorresponding Author
Isao Tanaka
Faculty of Advanced Life Sciences, Hokkaido University, Sapporo, 060-0810 Japan
Correspondence to: Isao Tanaka, Faculty of Advanced Life Sciences, Hokkaido University, Sapporo 060–0810, Japan. E-mail: [email protected] and Panadda Boonserm, Institute of Molecular Biosciences, Mahidol University, Salaya, Phuttamonthon, Nakhon Pathom 73170, Thailand. E-mail: [email protected]Search for more papers by this authorCorresponding Author
Panadda Boonserm
Institute of Molecular Biosciences, Mahidol University, Salaya, Phuttamonthon, Nakhon Pathom, 73170 Thailand
Correspondence to: Isao Tanaka, Faculty of Advanced Life Sciences, Hokkaido University, Sapporo 060–0810, Japan. E-mail: [email protected] and Panadda Boonserm, Institute of Molecular Biosciences, Mahidol University, Salaya, Phuttamonthon, Nakhon Pathom 73170, Thailand. E-mail: [email protected]Search for more papers by this authorABSTRACT
The binary toxin (Bin), produced by Lysinibacillus sphaericus, is composed of BinA (42 kDa) and BinB (51 kDa) proteins, which are both required for full toxicity against Culex and Anopheles mosquito larvae. Specificity of Bin toxin is determined by the binding of BinB component to a receptor present on the midgut epithelial membranes, while BinA is proposed to be a toxic component. Here, we determined the first crystal structure of the active form of BinB at a resolution of 1.75 Å. BinB possesses two distinct structural domains in its N- and C-termini. The globular N-terminal domain has a β-trefoil scaffold which is a highly conserved architecture of some sugar binding proteins or lectins, suggesting a role of this domain in receptor-binding. The BinB β-rich C-terminal domain shares similar three-dimensional folding with aerolysin type β-pore forming toxins, despite a low sequence identity. The BinB structure, therefore, is a new member of the aerolysin-like toxin family, with probably similarities in the cytolytic mechanism that takes place via pore formation. Proteins 2014; 82:2703–2712. © 2014 Wiley Periodicals, Inc.
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REFERENCES
- 1 Charles JF, Nielson-LeRoux C, Delecluse A. Bacillus sphaericus toxins: molecular biology and mode of action. Annu Rev Entomol 1996; 41: 451–472.
- 2 Ahmed M, Lyass L, Markham PN, Taylor SS, Vazquez-Laslop N, Neyfakh AA. Two highly similar multidrug transporters of Bacillus subtilis whose expression is differentially regulated. J Bacteriol 1995; 177: 3904–3910.
- 3 Baumann L, Baumann P. Expression in Bacillus subtilis of the 51- and 42-kilodalton mosquitocidal toxin genes of Bacillus sphaericus. Appl Environ Microbiol 1989; 55: 252–253.
- 4 Baumann P, Clark MA, Baumann L, Broadwell AH. Bacillus sphaericus as a mosquito pathogen: properties of the organism and its toxins. Microbiol Rev 1991; 55: 425–436.
- 5 Regis L, Silva-Filha MH, Nielsen-LeRoux C, Charles JF. Bacteriological larvicides of dipteran disease vectors. Trends Parasitol 2001; 17: 377–380.
- 6 Oei C, Hindley J, Berry C. An analysis of the genes encoding the 51.4- and 41.9-kDa toxins of Bacillus sphaericus 2297 by deletion mutagenesis: the construction of fusion proteins. FEMS Microbiol Lett 1990; 60: 265–273.
- 7 Nicolas L, Nielsen-Leroux C, Charles JF, Delecluse A. Respective role of the 42- and 51-kDa components of the Bacillus sphaericus toxin overexpressed in Bacillus thuringiensis. FEMS Microbiol Lett 1993; 106: 275–280.
- 8 Broadwell AH, Baumann P. Proteolysis in the gut of mosquito larvae results in further activation of the Bacillus sphaericus toxin. Appl Environ Microbiol 1987; 53: 1333–1337.
- 9 Broadwell AH, Clark MA, Baumann L, Baumann P. Construction by site-directed mutagenesis of a 39-kilodalton mosquitocidal protein similar to the larva-processed toxin of Bacillus sphaericus 2362. J Bacteriol 1990; 172: 4032–4036.
- 10 Clark MA, Baumann P. Deletion analysis of the 51-kilodalton protein of the Bacillus sphaericus 2362 binary mosquitocidal toxin: construction of derivatives equivalent to the larva-processed toxin. J Bacteriol 1990; 172: 6759–6763.
- 11 Promdonkoy B, Promdonkoy P, Panyim S. High-level expression in Escherichia coli, purification and mosquito-larvicidal activity of the binary toxin from Bacillus sphaericus. Curr Microbiol 2008; 57: 626–630.
- 12 Nielsen-Leroux C, Charles JF. Binding of Bacillus sphaericus binary toxin to a specific receptor on midgut brush-border membranes from mosquito larvae. FEBS J 1992; 210: 585–590.
- 13 Silva-Filha MH, Nielsen-Leroux C, Charles JF. Binding kinetics of Bacillus sphaericus binary toxin to midgut brush-border membranes of Anopheles and Culex sp. mosquito larvae. FEBS J 1997; 247: 754–761.
- 14 Charles JF, Silva-Filha MH, Nielsen-LeRoux C, Humphreys MJ, Berry C. Binding of the 51- and 42-kDa individual components from the Bacillus sphaericus crystal toxin to mosquito larval midgut membranes from Culex and Anopheles sp. (Diptera: Culicidae). FEMS Microbiol Lett 1997; 156: 153–159.
- 15 Oei C, Hindley J, Berry C. Binding of purified Bacillus sphaericus binary toxin and its deletion derivatives to Culex quinquefasciatus gut: elucidation of functional binding domains. J Gen Microbiol 1992; 138: 1515–1526.
- 16 Shanmugavelu M, Rajamohan F, Kathirvel M, Elangovan G, Dean DH, Jayaraman K. Functional complementation of nontoxic mutant binary toxins of Bacillus sphaericus 1593M generated by site-directed mutagenesis. Appl Environ Microbiol 1998; 64: 756–759.
- 17 Elangovan G, Shanmugavelu M, Rajamohan F, Dean DH, Jayaraman K. Identification of the functional site in the mosquito larvicidal binary toxin of Bacillus sphaericus 1593M by site-directed mutagenesis. Biochem Biophys Res Commun 2000; 276: 1048–1055.
- 18 Opota O, Charles JF, Warot S, Pauron D, Darboux I. Identification and characterization of the receptor for the Bacillus sphaericus binary toxin in the malaria vector mosquito, Anopheles gambiae. Comp Biochem Physiol B Biochem Mol Biol 2008; 149: 419–427.
- 19 Darboux I, Nielsen-LeRoux C, Charles JF, Pauron D. The receptor of Bacillus sphaericus binary toxin in Culex pipiens (Diptera: Culicidae) midgut: molecular cloning and expression. Insect Biochem Mol Biol 2001; 31: 981–990.
- 20 Silva-Filha MH, Nielsen-LeRoux C, Charles JF. Identification of the receptor for Bacillus sphaericus crystal toxin in the brush border membrane of the mosquito Culex pipiens (Diptera: Culicidae). Insect Biochem Mol Biol 1999; 29: 711–721.
- 21 Ferreira LM, Romao TP, de-Melo-Neto OP, Silva-Filha MH. The orthologue to the Cpm1/Cqm1 receptor in Aedes aegypti is expressed as a midgut GPI-anchored alpha-glucosidase, which does not bind to the insecticidal binary toxin. Insect Biochem Mol Biol 2010; 40: 604–610.
- 22 Ferreira LM, Romao TP, Nascimento NA, Costa Mda C, Rezende AM, de-Melo-Neto OP, Silva-Filha MH. Non conserved residues between Cqm1 and Aam1 mosquito alpha-glucosidases are critical for the capacity of Cqm1 to bind the Binary toxin from Lysinibacillus sphaericus. Insect Biochem Mol Biol 2014; 50: 34–42.
- 23 Cokmus C, Davidson EW, Cooper K. Electrophysiological effects of Bacillus sphaericus binary toxin on cultured mosquito cells. J Invertebr Pathol 1997; 69: 197–204.
- 24 Schwartz JL, Potvin L, Coux F, Charles JF, Berry C, Humphreys MJ, Jones AF, Bernhart I, Dalla Serra M, Menestrina G. Permeabilization of model lipid membranes by Bacillus sphaericus mosquitocidal binary toxin and its individual components. J Membr Biol 2001; 184: 171–183.
- 25 Boonserm P, Moonsom S, Boonchoy C, Promdonkoy B, Parthasarathy K, Torres J. Association of the components of the binary toxin from Bacillus sphaericus in solution and with model lipid bilayers. Biochem Biophys Res Commun 2006; 342: 1273–1278.
- 26 Kunthic T, Promdonkoy B, Srikhirin T, Boonserm P. Essential role of tryptophan residues in toxicity of binary toxin from Bacillus sphaericus. BMB Rep 2011; 44: 674–679.
- 27 Silva-Filha MH, Peixoto CA. Immunocytochemical localization of the Bacillus sphaericus binary toxin components in Culex quinquefasciatus (Diptera:Culicidae) larvae midgut. Pesticide Biochem Physiol 2003; 77: 138–146.
- 28 Opota O, Gauthier NC, Doye A, Berry C, Gounon P, Lemichez E, Pauron D. Bacillus sphaericus binary toxin elicits host cell autophagy as a response to intoxication. PLoS One 2011; 6: e14682.
- 29 Srisucharitpanit K, Inchana P, Rungrod A, Promdonkoy B, Boonserm P. Expression and purification of the active soluble form of Bacillus sphaericus binary toxin for structural analysis. Protein Expr Purif 2012; 82: 368–372.
- 30 Srisucharitpanit K, Yao M, Chimnaronk S, Promdonkoy B, Tanaka I, Boonserm P. Crystallization and preliminary X-ray crystallographic analysis of the functional form of BinB binary toxin from Bacillus sphaericus. Acta Crystallogr Sect F Struct Biol Cryst Commun 2013; 69: 170–173.
- 31 Sheldrick GM. A short history of SHELX. Acta Crystallogr A 2008; 64: 112–122.
- 32 Emsley P, Cowtan K. Coot: model-building tools for molecular graphics. Acta Crystallogr D Biol Crystallogr 2004; 60: 2126–2132.
- 33 DeLano WL. The PyMOL Molecular Graphics System. DeLano Scientific, CA: Palo Alto; 2002.
- 34 Skubak P, Murshudov GN, Pannu NS. Direct incorporation of experimental phase information in model refinement. Acta Crystallogr D Biol Crystallogr 2004; 60: 2196–2201.
- 35 Laskowski RA, Moss DS, Thornton JM. Main-chain bond lengths and bond angles in protein structures. J Mol Biol 1993; 231: 1049–1067.
- 36 Parker MW, Buckley JT, Postma JP, Tucker AD, Leonard K, Pattus F, Tsernoglou D. Structure of the Aeromonas toxin proaerolysin in its water-soluble and membrane-channel states. Nature 1994; 367: 292–295.
- 37 Boonyos P, Soonsanga S, Boonserm P, Promdonkoy B. Role of cysteine at positions 67, 161 and 241 of a Bacillus sphaericus binary toxin BinB. BMB Rep 2010; 43: 23–28.
- 38 Mancheno JM, Tateno H, Goldstein IJ, Martinez-Ripoll M, Hermoso JA. Structural analysis of the Laetiporus sulphureus hemolytic pore-forming lectin in complex with sugars. J Biol Chem 2005; 280: 17251–17259.
- 39 Holm L, Rosenstrom P. Dali server: conservation mapping in 3D. Nucleic Acids Res 2010; 38: W545–549.
- 40 Nakamura T, Takada N, Tonozuka T, Sakano Y, Oguma K, Nishikawa A. Binding properties of Clostridium botulinum type C progenitor toxin to mucins. Biochim Biophys Acta 2007; 1770: 551–555.
- 41 Carpusca I, Jank T, Aktories K. Bacillus sphaericus mosquitocidal toxin (MTX) and pierisin: the enigmatic offspring from the family of ADP-ribosyltransferases. Mol Microbiol 2006; 62: 621–630.
- 42 Akiba T, Abe Y, Kitada S, Kusaka Y, Ito A, Ichimatsu T, Katayama H, Akao T, Higuchi K, Mizuki E, Ohba M, Kanai R, Harata K. Crystal structure of the parasporin-2 Bacillus thuringiensis toxin that recognizes cancer cells. J Mol Biol 2009; 386: 121–133.
- 43 Cole AR, Gibert M, Popoff M, Moss DS, Titball RW, Basak AK. Clostridium perfringens epsilon-toxin shows structural similarity to the pore-forming toxin aerolysin. Nat Struct Mol Biol 2004; 11: 797–798.
- 44 Hazes B. The (QxW)3 domain: a flexible lectin scaffold. Protein Sci 1996; 5: 1490–1501.
- 45 Inoue K, Sobhany M, Transue TR, Oguma K, Pedersen LC, Negishi M. Structural analysis by X-ray crystallography and calorimetry of a haemagglutinin component (HA1) of the progenitor toxin from Clostridium botulinum. Microbiology 2003; 149: 3361–3370.
- 46 Uchida T, Yamasaki T, Eto S, Sugawara H, Kurisu G, Nakagawa A, Kusunoki M, Hatakeyama T. Crystal structure of the hemolytic lectin CEL-III isolated from the marine invertebrate Cucumaria echinata: implications of domain structure for its membrane pore-formation mechanism. J Biol Chem 2004; 279: 37133–37141.
- 47 Angulo I, Acebron I, de las Rivas B, Munoz R, Rodriguez-Crespo I, Menendez M, Garcia P, Tateno H, Goldstein IJ, Perez-Agote B, Mancheno JM. High-resolution structural insights on the sugar-recognition and fusion tag properties of a versatile beta-trefoil lectin domain from the mushroom Laetiporus sulphureus. Glycobiology 2011; 21: 1349–1361.
- 48 Singkhamanan K, Promdonkoy B, Chaisri U, Boonserm P. Identification of amino acids required for receptor binding and toxicity of the Bacillus sphaericus binary toxin. FEMS Microbiol Lett 2010; 303: 84–91.
- 49 Singkhamanan K, Promdonkoy B, Srikhirin T, Boonserm P. Amino acid residues in the N-terminal region of the BinB subunit of Lysinibacillus sphaericus binary toxin play a critical role during receptor binding and membrane insertion. J Invertebr Pathol 2013; 114: 65–70.
- 50 Romao TP, de-Melo-Neto OP, Silva-Filha MH. The N-terminal third of the BinB subunit from the Bacillus sphaericus binary toxin is sufficient for its interaction with midgut receptors in Culex quinquefasciatus. FEMS Microbiol Lett 2011; 321: 167–174.
- 51 Pardo-Lopez L, Gomez I, Rausell C, Sanchez J, Soberon M, Bravo A. Structural changes of the Cry1Ac oligomeric pre-pore from bacillus thuringiensis induced by N-acetylgalactosamine facilitates toxin membrane insertion. Biochemistry 2006; 45: 10329–10336.
- 52 Melton JA, Parker MW, Rossjohn J, Buckley JT, Tweten RK. The identification and structure of the membrane-spanning domain of the Clostridium septicum alpha toxin. J Biol Chem 2004; 279: 14315–14322.
- 53 Song L, Hobaugh MR, Shustak C, Cheley S, Bayley H, Gouaux JE. Structure of staphylococcal alpha-hemolysin, a heptameric transmembrane pore. Science 1996; 274: 1859–1866.
- 54 Smith AW, Camara-Artigas A, Brune DC, Allen JP. Implications of high-molecular-weight oligomers of the binary toxin from Bacillus sphaericus. J Invertebr Pathol 2005; 88: 27–33.
- 55 Bravo A, Gill SS, Soberon M. Mode of action of Bacillus thuringiensis Cry and Cyt toxins and their potential for insect control. Toxicon 2007; 49: 423–435.
- 56 Mogridge J, Cunningham K, Lacy DB, Mourez M, Collier RJ. The lethal and edema factors of anthrax toxin bind only to oligomeric forms of the protective antigen. Proc Natl Acad Sci USA 2002; 99: 7045–7048.
- 57 Marvaud JC, Smith T, Hale ML, Popoff MR, Smith LA, Stiles BG. Clostridium perfringens iota-toxin: mapping of receptor binding and Ia docking domains on Ib. Infect Immun 2001; 69: 2435–2441.
- 58 Blocker D, Barth H, Maier E, Benz R, Barbieri JT, Aktories K. The C terminus of component C2II of Clostridium botulinum C2 toxin is essential for receptor binding. Infect Immun 2000; 68: 4566–4573.
- 59 Collier RJ, Young JA. Anthrax toxin. Annu Rev Cell Dev Biol 2003; 19: 45–70.
- 60 Davidson EW. Binding of the Bacillus sphaericus (Eubacteriales: Bacillaceae) toxin to midgut cells of mosquito (Diptera: Culicidae) larvae: relationship to host range. J Med Entomol 1988; 25: 151–157.