Genetic Analysis Using Genome-Wide SNP Markers in Livestock Breeding

5 November 2024
5 November 2024
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Open Access

Genomic evaluation using SNP- and haplotype-based genomic relationship matrices in a closed line of Duroc pigs

Yoshinobu Uemoto,  Shuji Sato,  Takashi Kikuchi,  Sachiko Egawa,  Kimiko Kohira,  Hironori Sakuma,  Satoshi Miyashita,  Shinji Arata,  Takatoshi Kojima,  Keiichi Suzuki, 
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Genome-wide association studies reveal additional related loci for fatty acid composition in a Duroc pig multigenerational population

Shuji Sato,  Yoshinobu Uemoto,  Takashi Kikuchi,  Sachiko Egawa,  Kimiko Kohira,  Tomomi Saito,  Hironori Sakuma,  Satoshi Miyashita,  Shinji Arata,  Keiichi Suzuki, 

Beef cattle

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Estimation of variance and genomic prediction using genotypes imputed from low-density marker subsets for carcass traits in Japanese black cattle

Shinichiro Ogawa,  Hirokazu Matsuda,  Yukio Taniguchi,  Toshio Watanabe,  Yoshikazu Sugimoto,  Hiroaki Iwaisaki, 
Full Access

Estimation of variance components for carcass traits in Japanese Black cattle using 50K SNP genotype data

Toshio Watanabe,  Hirokazu Matsuda,  Aisaku Arakawa,  Takahisa Yamada,  Hiroaki Iwaisaki,  Shota Nishimura,  Yoshikazu Sugimoto, 
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Genome-wide association study for fatty acid composition in Japanese Black cattle

Atsushi Ishii,  Keita Yamaji,  Yoshinobu Uemoto,  Nanae Sasago,  Eiji Kobayashi,  Naohiko Kobayashi,  Tamako Matsuhashi,  Shin Maruyama,  Hirokazu Matsumoto,  Shinji Sasazaki,  Hideyuki Mannen, 
Full Access

Analysis of biological networks and biological pathways associated with residual feed intake in beef cattle

Brian Karisa,  Stephen Moore,  Graham Plastow, 

Dairy cattle

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Application of single-step genomic best linear unbiased prediction with a multiple-lactation random regression test-day model for Japanese Holsteins

Toshimi Baba,  Yusaku Gotoh,  Satoshi Yamaguchi,  Satoshi Nakagawa,  Hayato Abe,  Yutaka Masuda,  Takayoshi Kawahara, 
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Identification of differential selection traces in two Polish cattle breeds

Artur Gurgul,  Klaudia Pawlina,  Monika Frys-Żurek,  Monika Bugno-Poniewierska, 

Other cattle: Genetic variation

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Whole genome detection of signature of positive selection in African cattle reveals selection for thermotolerance

Mengistie Taye,  Wonseok Lee,  Kelsey Caetano-Anolles,  Tadelle Dessie,  Olivier Hanotte,  Okeyo Ally Mwai,  Stephen Kemp,  Seoae Cho,  Sung Jong Oh,  Hak-Kyo Lee,  Heebal Kim, 
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Application of highly differentiated SNPs between Japanese Black and Holstein to a breed assignment test between Japanese Black and F1 (Japanese Black x Holstein) and Holstein

Shota NISHIMURA,  Toshio WATANABE,  Atsushi OGINO,  Kazuhiro SHIMIZU,  Mitsuo MORITA,  Yoshikazu SUGIMOTO,  Akiko TAKASUGA, 
Open Access

Genetic structure and relationships of 16 Asian and European cattle populations using DigiTag2 assay

Riku Yonesaka,  Shinji Sasazaki,  Hiroshi Yasue,  Satoru Niwata,  Yousuke Inayoshi,  Fumio Mukai,  Hideyuki Mannen, 

Simulation

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Impacts of genotyping strategies on long-term genetic response in genomic selection

Motohide Nishio,  Masahiro Satoh, 
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Parameters affecting genome simulation for evaluating genomic selection method

Motohide Nishio,  Masahiro Satoh,