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Editorial

Free Access

Preface: advances in DNA sequencing accelerating plant biotechnology

David Edwards,  Robert J. Henry,  Keith J. Edwards, 
  • Pages: 621-622
  • First Published: 06 July 2012

Research articles

Genome-wide DNA polymorphisms in elite indica rice inbreds discovered by whole-genome sequencing

Gopala K. Subbaiyan,  Daniel L. E. Waters,  Sanjay K. Katiyar,  Ajanahalli R. Sadananda,  Satyadev Vaddadi,  Robert J. Henry, 
  • Pages: 623-634
  • First Published: 06 January 2012

A tailed PCR procedure for cost-effective, two-order multiplex sequencing of candidate genes in polyploid plants

Mahmood Gholami,  Wubishet A. Bekele,  Joerg Schondelmaier,  Rod J. Snowdon, 
  • Pages: 635-645
  • First Published: 11 April 2012

High-throughput and parallel SNP discovery in selected candidate genes in Eucalyptus camaldulensis using Illumina NGS platform

Prasad S. Hendre,  R. Kamalakannan,  Mohan Varghese, 
  • Pages: 646-656
  • First Published: 18 May 2012

Enrichment of genomic DNA for polymorphism detection in a non-model highly polyploid crop plant

Peter C. Bundock,  Rosanne E. Casu,  Robert J. Henry, 
  • Pages: 657-667
  • First Published: 24 May 2012

Gene expression in the developing aleurone and starchy endosperm of wheat

Susan A. Gillies,  Agnelo Futardo,  Robert J. Henry, 
  • Pages: 668-679
  • First Published: 05 June 2012

Identification of systemic responses in soybean nodulation by xylem sap feeding and complete transcriptome sequencing reveal a novel component of the autoregulation pathway

Dugald E. Reid,  Satomi Hayashi,  Michal Lorenc,  Jiri Stiller,  David Edwards,  Peter M. Gresshoff,  Brett J. Ferguson, 
  • Pages: 680-689
  • First Published: 24 May 2012

Transcriptome sequencing of wild chickpea as a rich resource for marker development

Shalu Jhanwar,  Pushp Priya,  Rohini Garg,  Swarup K. Parida,  Akhilesh K. Tyagi,  Mukesh Jain, 
  • Pages: 690-702
  • First Published: 06 June 2012

Bread matters: a national initiative to profile the genetic diversity of Australian wheat

David Edwards,  Stephen Wilcox,  Roberto A. Barrero,  Delphine Fleury,  Colin R. Cavanagh,  Kerrie L. Forrest,  Matthew J. Hayden,  Paula Moolhuijzen,  Gabriel Keeble-Gagnère,  Matthew I. Bellgard,  Michał T. Lorenc,  Catherine A. Shang,  Ute Baumann,  Jennifer M. Taylor,  Matthew K. Morell,  Peter Langridge,  Rudi Appels,  Anna Fitzgerald, 
  • Pages: 703-708
  • First Published: 09 June 2012

Identification and characterization of candidate Rlm4 blackleg resistance genes in Brassica napus using next-generation sequencing

Reece Tollenaere,  Alice Hayward,  Jessica Dalton-Morgan,  Emma Campbell,  Joanne R.M. Lee,  Michal T. Lorenc,  Sahana Manoli,  Jiri Stiller,  Rosy Raman,  Harsh Raman,  David Edwards,  Jacqueline Batley, 
  • Pages: 709-715
  • First Published: 23 June 2012
Open Access

Large-scale development of cost-effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes

Pavana J. Hiremath,  Ashish Kumar,  Ramachandra Varma Penmetsa,  Andrew Farmer,  Jessica A. Schlueter,  Siva K. Chamarthi,  Adam M. Whaley,  Noelia Carrasquilla-Garcia,  Pooran M. Gaur,  Hari D. Upadhyaya,  Polavarapu B. Kavi Kishor,  Trushar M. Shah,  Douglas R. Cook,  Rajeev K. Varshney, 
  • Pages: 716-732
  • First Published: 16 June 2012

Targeted re-sequencing of the allohexaploid wheat exome

Mark O. Winfield,  Paul A. Wilkinson,  Alexandra M. Allen,  Gary L. A. Barker,  Jane A. Coghill,  Amanda Burridge,  Anthony Hall,  Rachael C. Brenchley,  Rosalinda D’Amore,  Neil Hall,  Michael W. Bevan,  Todd Richmond,  Daniel J. Gerhardt,  Jeffrey A. Jeddeloh,  Keith J. Edwards, 
  • Pages: 733-742
  • First Published: 18 June 2012

Single nucleotide polymorphism discovery from wheat next-generation sequence data

Kaitao Lai,  Chris Duran,  Paul J. Berkman,  Michał T. Lorenc,  Jiri Stiller,  Sahana Manoli,  Matthew J. Hayden,  Kerrie L. Forrest,  Delphine Fleury,  Ute Baumann,  Manuel Zander,  Annaliese S. Mason,  Jacqueline Batley,  David Edwards, 
  • Pages: 743-749
  • First Published: 03 July 2012

Second-generation sequencing for gene discovery in the Brassicaceae

Alice Hayward,  Guru Vighnesh,  Christina Delay,  Mohd Rafizan Samian,  Sahana Manoli,  Jiri Stiller,  Megan McKenzie,  David Edwards,  Jacqueline Batley, 
  • Pages: 750-759
  • First Published: 06 July 2012