• Issue

    Proteins: Structure, Function, and Bioinformatics: Volume 56, Issue 1

    1-179
    1 July 2004
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Short Reviews

Designing proteins from the inside out

Salvador Ventura,  Luis Serrano, 
  • Pages: 1-10
  • First Published: 07 May 2004

Short Communication

Prediction of transmembrane regions of β-barrel proteins using ANN- and SVM-based methods

Navjyot K. Natt,  Harpreet Kaur,  G. P. S. Raghava, 
  • Pages: 11-18
  • First Published: 07 May 2004

Predicted role for the archease protein family based on structural and sequence analysis of TM1083 and MTH1598, two proteins structurally characterized through structural genomics efforts

Jaume M. Canaves, 
  • Pages: 19-27
  • First Published: 28 April 2004

Research Articles

Solution structure of hypothetical nudix hydrolase DR0079 from extremely radiation-resistant Deinococcus radiodurans bacterium

Garry W. Buchko,  Shuisong Ni,  Stephen R. Holbrook,  Michael A. Kennedy, 
  • Pages: 28-39
  • First Published: 02 April 2004

Structural and sequence comparisons arising from the solution structure of the transcription elongation factor NusG from Thermus thermophilus

Paul Reay,  Kazuhiko Yamasaki,  Takaho Terada,  Seiki Kuramitsu,  Mikako Shirouzu,  Shigeyuki Yokoyama, 
  • Pages: 40-51
  • First Published: 28 April 2004

Probing flexibility and “induced-fit” phenomena in aldose reductase by comparative crystal structure analysis and molecular dynamics simulations†

Christoph A. Sotriffer,  Oliver Krämer,  Gerhard Klebe, 
  • Pages: 52-66
  • First Published: 28 April 2004

Toward the active conformations of rhodopsin and the β2-adrenergic receptor

Paul R. Gouldson,  Nathan J. Kidley,  Robert P. Bywater,  Georgios Psaroudakis,  Harry D. Brooks,  Constantino Diaz,  David Shire,  Christopher A. Reynolds, 
  • Pages: 67-84
  • First Published: 16 April 2004

The structure of murine neuroglobin: Novel pathways for ligand migration and binding

Beatrice Vallone,  Karin Nienhaus,  Maurizio Brunori,  G. Ulrich Nienhaus, 
  • Pages: 85-92
  • First Published: 07 May 2004

A physical reference state unifies the structure-derived potential of mean force for protein folding and binding

Song Liu,  Chi Zhang,  Hongyi Zhou,  Yaoqi Zhou, 
  • Pages: 93-101
  • First Published: 16 April 2004

Partial atomic charges of amino acids in proteins

Annick Thomas,  Alain Milon,  Robert Brasseur, 
  • Pages: 102-109
  • First Published: 16 April 2004

Folding thermodynamics of three β-sheet peptides: A model study

Anders Irbäck,  Fredrik Sjunnesson, 
  • Pages: 110-116
  • First Published: 07 May 2004

Strategy for supplementing structure calculations using limited data with hydrophobic distance restraints

Andrei T. Alexandrescu, 
  • Pages: 117-129
  • First Published: 07 May 2004

Hydrophobic complementarity in protein–protein docking

Alexander Berchanski,  Boaz Shapira,  Miriam Eisenstein, 
  • Pages: 130-142
  • First Published: 07 May 2004

A method for simultaneous alignment of multiple protein structures†‡

Maxim Shatsky,  Ruth Nussinov,  Haim J. Wolfson, 
  • Pages: 143-156
  • First Published: 28 April 2004

Probabilistic description of protein alignments for sequences and structures

Ryotaro Koike,  Kengo Kinoshita,  Akinori Kidera, 
  • Pages: 157-166
  • First Published: 16 April 2004

Structure Notes

Crystal structure of a glycerophosphodiester phosphodiesterase (GDPD) from Thermotoga maritima (TM1621) at 1.60 Å resolution

Eugenio Santelli,  Robert Schwarzenbacher,  Daniel McMullan,  Tanya Biorac,  Linda S. Brinen,  Jaume M. Canaves,  Jamison Cambell,  Xiaoping Dai,  Ashley M. Deacon,  Marc-André Elsliger,  Said Eshagi,  Ross Floyd,  Adam Godzik,  Carina Grittini,  Slawomir K. Grzechnik,  Lukasz Jaroszewski,  Cathy Karlak,  Heath E. Klock,  Eric Koesema,  John S. Kovarik,  Andreas Kreusch,  Peter Kuhn,  Scott A. Lesley,  Timothy M. McPhillips,  Mitchell D. Miller,  Andrew Morse,  Kin Moy,  Jie Ouyang,  Rebecca Page,  Kevin Quijano,  Fred Rezezadeh,  Alyssa Robb,  Eric Sims,  Glen Spraggon,  Raymond C. Stevens,  Henry van den Bedem,  Jeff Velasquez,  Juli Vincent,  Frank von Delft,  Xianhong Wang,  Bill West,  Guenter Wolf,  Qingping Xu,  Keith O. Hodgson,  John Wooley,  Ian A. Wilson, 
  • Pages: 167-170
  • First Published: 07 May 2004

Research Articles

Crystal structure of a ribose-5-phosphate isomerase RpiB (TM1080) from Thermotoga maritima at 1.90 Å resolution

Qingping Xu,  Robert Schwarzenbacher,  Daniel McMullan,  Frank von Delft,  Linda S. Brinen,  Jaume M. Canaves,  Xiaoping Dai,  Ashley M. Deacon,  Marc-André Elsliger,  Said Eshagi,  Ross Floyd,  Adam Godzik,  Carina Grittini,  Slawomir K. Grzechnik,  Lukasz Jaroszewski,  Cathy Karlak,  Heath E. Klock,  Eric Koesema,  John S. Kovarik,  Andreas Kreusch,  Peter Kuhn,  Scott A. Lesley,  Inna Levin,  Timothy M. McPhillips,  Mitchell D. Miller,  Andrew Morse,  Kin Moy,  Jie Ouyang,  Rebecca Page,  Kevin Quijano,  Alyssa Robb,  Glen Spraggon,  Raymond C. Stevens,  Henry van den Bedem,  Jeff Velasquez,  Juli Vincent,  Xianhong Wang,  Bill West,  Guenter Wolf,  Keith O. Hodgson,  John Wooley,  Ian A. Wilson, 
  • Pages: 171-175
  • First Published: 07 May 2004

Structure Note

Free Access

Crystal structure of the TM1442 protein from Thermotoga maritima, a homolog of the Bacillus subtilis general stress response anti-anti-sigma factor RsbV

Jae Young Lee,  Hyung Jun Ahn,  Kook Sun Ha,  Se Won Suh, 
  • Pages: 176-179
  • First Published: 07 May 2004