Third Meeting on the Critical Assessment of Techniques for Protein Structure Prediction: Proteins: Structure, Function, and Bioinformatics: Vol 37, No S3

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Proteins: Structure, Function, and Bioinformatics: Volume 37, Issue S3

Third Meeting on the Critical Assessment of Techniques for Protein Structure Prediction

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Editor's Corner

Third meeting on the critical assessment of techniques for protein structure prediction

Introduction

Critical assessment of methods of protein structure prediction (CASP): Round III

Numerical Evaluation Methods

Automated large scale evaluation of protein structure predictions

RMS/Coverage graphs: A qualitative method for comparing three-dimensional protein structure predictions

Processing and analysis of CASP3 protein structure predictions†

Comparative Modeling: Assessment

CASP3 comparative modeling evaluation

Comparative Modeling: Prediction Reports

Model building by comparison at CASP3: Using expert knowledge and computer automation

An iterative structure-assisted approach to sequence alignment and comparative modeling

Comparative modeling: Prediction Reports

Modeling three-dimensional protein structures for amino acid sequences of the CASP3 experiment using sequence-derived predictions

Sequence to structure alignment in comparative modeling using PrISM

Addressing the issue of sequence-to-structure alignments in comparative modeling of CASP3 target proteins†

Comparative Modeling: Prediction Reports

Comparative modeling of CASP3 targets using PSI-BLAST and SCWRL

Fold Recognition: Assessment

Structure classification-based assessment of CASP3 predictions for the fold recognition targets

Fold Recognition: Prediction Reports

Successful recognition of protein folds using threading methods biased by sequence similarity and predicted secondary structure

Sustained performance of knowledge-based potentials in fold recognition

Predicting protein structure using only sequence information

Cooperative approach for the protein fold recognition

Threading with explicit models for evolutionary conservation of structure and sequence†

Fold recognition using sequence and secondary structure information

Ab Initio: Assessment

Analysis and assessment of ab initio three-dimensional prediction, secondary structure, and contacts prediction

Ab Initio: Prediction Reports

Ab initio protein structure prediction of CASP III targets using ROSETTA

Ab initio folding of proteins using restraints derived from evolutionary information

Improved ab Initio predictions with a simplified, flexible geometry model

Ab initio protein structure prediction using a combined hierarchical approach

Prediction of protein structure: The problem of fold multiplicity

Calculation of protein conformation by global optimization of a potential energy function

Predictions From Automatic Servers

CAFASP-1: Critical assessment of fully automated structure prediction methods

Comparison of Prediction Quality in Three CASPS

A measure of progress in fold recognition?†

An attempt to analyse progress in fold recognition from CASP1 to CASP3

Some measures of comparative performance in the three CASPs†

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Processing and analysis of CASP3 protein structure predictions ^†

Addressing the issue of sequence-to-structure alignments in comparative modeling of CASP3 target proteins ^†

Threading with explicit models for evolutionary conservation of structure and sequence ^†

A measure of progress in fold recognition?^†

Some measures of comparative performance in the three CASPs ^†