Volume 94, Issue 2 pp. 332-349
Research Article

KCNT2-Related Disorders: Phenotypes, Functional, and Pharmacological Properties

Maria Cristina Cioclu MD

Maria Cristina Cioclu MD

Department of Epilepsy Genetics and Personalized Medicine (member of ERN EpiCARE), Danish Epilepsy Centre, Dianalund, Denmark

Department of Biomedical, Metabolic, and Neural Science, University of Modena and Reggio Emilia, Modena, Italy

These authors contributed equally to this work.

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Ilaria Mosca PhD

Ilaria Mosca PhD

Department of Medicine and Health Sciences “Vincenzo Tiberio”, University of Molise, Campobasso, Italy

These authors contributed equally to this work.

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Paolo Ambrosino PhD

Paolo Ambrosino PhD

Dept. of Science and Technology, University of Sannio, Benevento, Italy

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Deborah Puzo MSc

Deborah Puzo MSc

Department of Medicine and Health Sciences “Vincenzo Tiberio”, University of Molise, Campobasso, Italy

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Allan Bayat MD, PhD

Allan Bayat MD, PhD

Department of Epilepsy Genetics and Personalized Medicine (member of ERN EpiCARE), Danish Epilepsy Centre, Dianalund, Denmark

Department of Regional Health Research, University of Southern Denmark, Odense, Denmark

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Saskia B. Wortmann MD, PhD

Saskia B. Wortmann MD, PhD

University Children's Hospital, Paracelsus Medical University, Salzburg, Austria

Amalia Children's Hospital, Nijmegen, The Netherlands

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Johannes Koch MD

Johannes Koch MD

University Children's Hospital, Paracelsus Medical University, Salzburg, Austria

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Vincent Strehlow MD

Vincent Strehlow MD

Institute of Human Genetics, University of Leipzig Medical Center, Leipzig, Germany

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Kentaro Shirai MD

Kentaro Shirai MD

Department of Pediatrics, Tsuchiura Kyodo General Hospital, Tsuchiura, Japan

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Naomichi Matsumoto MD, PhD

Naomichi Matsumoto MD, PhD

Department of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama, Japan

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Stephan J. Sanders MD, PhD

Stephan J. Sanders MD, PhD

Department of Psychiatry and Behavioral Sciences, UCSF Weill Institute for Neurosciences, University of California, San Francisco, CA, USA

Institute for Human Genetics, University of California, San Francisco, CA, USA

Bakar Computational Health Sciences Institute, University of California, San Francisco, CA, USA

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Vincent Michaud MD

Vincent Michaud MD

Service de Génétique Médicale, Centre de Référence Anomalies du Développement et Syndrome Malformatifs, Centre Hospitalier Universitaire de Bordeaux, Bordeaux, France

Maladies rares: Génétique et Métabolisme (MRGM), INSERM U1211, Université de Bordeaux, Bordeaux, France

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Marine Legendre MD, PhD

Marine Legendre MD, PhD

Service de Génétique Médicale, Centre de Référence Anomalies du Développement et Syndrome Malformatifs, Centre Hospitalier Universitaire de Bordeaux, Bordeaux, France

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Antonella Riva MD

Antonella Riva MD

IRCCS Istituto Giannina Gaslini, Genoa, Italy

Department of Neurosciences, Rehabilitation, Ophthalmology, Genetics, Maternal and Child Health, University of Genoa, Genoa, Italy

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Pasquale Striano MD, PhD

Pasquale Striano MD, PhD

IRCCS Istituto Giannina Gaslini, Genoa, Italy

Department of Neurosciences, Rehabilitation, Ophthalmology, Genetics, Maternal and Child Health, University of Genoa, Genoa, Italy

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Hiltrud Muhle MD

Hiltrud Muhle MD

Department of Neuropediatrics, University Medical Centre Schleswig-Holstein, Christian-Albrechts-University, Kiel, Germany

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Manuela Pendziwiat MSc

Manuela Pendziwiat MSc

Department of Neuropediatrics, University Medical Centre Schleswig-Holstein, Christian-Albrechts-University, Kiel, Germany

Institute of Clinical Molecular Biology, Christian-Albrechts-University of Kiel, Kiel, Germany

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Gaetan Lesca MD, PhD

Gaetan Lesca MD, PhD

Pathophysiology and Genetics of Neuron and Muscle (PNMG), UCBL, CNRS UMR5261—INSERM U1315, Lyon, France

Department of Medical Genetics, University Hospital of Lyon and Claude Bernard Lyon I University, Lyon, France

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Giuseppe Donato Mangano MD

Giuseppe Donato Mangano MD

Department of Biomedicine, Neuroscience and Advanced Diagnostics, University of Palermo, Palermo, Italy

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Rosaria Nardello MD

Rosaria Nardello MD

Department of Health Promotion, Mother and Child Care, Internal Medicine and Medical Specialties “G. D'Alessandro”, University of Palermo, Palermo, Italy

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KCNT2-study groupJohannes R. Lemke MD

Johannes R. Lemke MD

Institute of Human Genetics, University of Leipzig Medical Center, Leipzig, Germany

Center for Rare Diseases, University of Leipzig Medical Center, Leipzig, Germany

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Rikke S. Møller PhD

Rikke S. Møller PhD

Department of Epilepsy Genetics and Personalized Medicine (member of ERN EpiCARE), Danish Epilepsy Centre, Dianalund, Denmark

Department of Regional Health Research, University of Southern Denmark, Odense, Denmark

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Maria Virginia Soldovieri PhD

Maria Virginia Soldovieri PhD

Department of Medicine and Health Sciences “Vincenzo Tiberio”, University of Molise, Campobasso, Italy

These authors contributed equally to this work.

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Guido Rubboli MD

Corresponding Author

Guido Rubboli MD

Department of Epilepsy Genetics and Personalized Medicine (member of ERN EpiCARE), Danish Epilepsy Centre, Dianalund, Denmark

University of Copenhagen, Copenhagen, Denmark

These authors contributed equally to this work.

Address correspondence to Dr Taglialatela, Department of Neuroscience, University of Naples “Federico II”, Via Pansini 5, 80131 Naples, Italy. E-mail: [email protected]; Dr Rubboli, The Danish Epilepsy Centre, Filadelfia/University of Copenhagen, Kolonivej 1, 4293 Dianalund, Denmark. E-mail: [email protected]

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Maurizio Taglialatela MD, PhD

Corresponding Author

Maurizio Taglialatela MD, PhD

Department of Neuroscience, University of Naples “Federico II”, Naples, Italy

These authors contributed equally to this work.

Address correspondence to Dr Taglialatela, Department of Neuroscience, University of Naples “Federico II”, Via Pansini 5, 80131 Naples, Italy. E-mail: [email protected]; Dr Rubboli, The Danish Epilepsy Centre, Filadelfia/University of Copenhagen, Kolonivej 1, 4293 Dianalund, Denmark. E-mail: [email protected]

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First published: 16 April 2023
Citations: 3

Abstract

Objective

Pathogenic variants in KCNT2 are rare causes of developmental epileptic encephalopathy (DEE). We herein describe the phenotypic and genetic features of patients with KCNT2-related DEE, and the in vitro functional and pharmacological properties of KCNT2 channels carrying 14 novel or previously untested variants.

Methods

Twenty-five patients harboring KCNT2 variants were investigated: 12 were identified through an international collaborative network, 13 were retrieved from the literature. Clinical data were collected and included in a standardized phenotyping sheet. Novel variants were detected using exome sequencing and classified using ACMG criteria. Functional and pharmacological studies were performed by whole-cell electrophysiology in HEK-293 and SH-SY5Y cells.

Results

The phenotypic spectrum encompassed: (a) intellectual disability/developmental delay (21/22 individuals with available information), ranging from mild to severe/profound; (b) epilepsy (15/25); (c) neurological impairment, with altered muscle tone (14/22); (d) dysmorphisms (13/20). Nineteen pathogenic KCNT2 variants were found (9 new, 10 reported previously): 16 missense, 1 in-frame deletion of a single amino acid, 1 nonsense, and 1 frameshift. Among tested variants, 8 showed gain-of-function (GoF), and 6 loss-of-function (LoF) features when expressed heterologously in vitro. Quinidine and fluoxetine blocked all GoF variants, whereas loxapine and riluzole activated some LoF variants while blocking others.

Interpretation

We expanded the phenotypic and genotypic spectrum of KCNT2-related disorders, highlighting novel genotype–phenotype associations. Pathogenic KCNT2 variants cause GoF or LoF in vitro phenotypes, and each shows a unique pharmacological profile, suggesting the need for in vitro functional and pharmacological investigation to enable targeted therapies based on the molecular phenotype. ANN NEUROL 2023;94:332–349

Potential Conflicts of Interest

The authors report no competing interests. S.J.S. receives research support from BioMarin Pharmaceuticals.

Data Availability Statement

All main results of this study are available within the article and its Supplementary material. Further inquiries can be directed to the corresponding authors.

The full text of this article hosted at iucr.org is unavailable due to technical difficulties.

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