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integrative structural biology

Open Access

Towards a structural biology work bench

Chris Morris, 
  • Pages: 681-682
  • First Published: 01 May 2013

On the usefulness of ion-mobility mass spectrometry and SAXS data in scoring docking decoys

Ezgi Karaca,  Alexandre M. J. J. Bonvin, 
  • Pages: 683-694
  • First Published: 01 May 2013

On the development of three new tools for organizing and sharing information in three-dimensional electron microscopy

Roberto Marabini,  Jose Ramon Macias,  Javier Vargas,  Adrian Quintana,  Carlos Oscar S. Sorzano,  Jose María Carazo, 
  • Pages: 695-700
  • First Published: 01 May 2013
Open Access

OpenStructure: an integrated software framework for computational structural biology

M. Biasini,  T. Schmidt,  S. Bienert,  V. Mariani,  G. Studer,  J. Haas,  N. Johner,  A. D. Schenk,  A. Philippsen,  T. Schwede, 
  • Pages: 701-709
  • First Published: 01 May 2013
Open Access

The role of structural bioinformatics resources in the era of integrative structural biology

Aleksandras Gutmanas,  Thomas J. Oldfield,  Ardan Patwardhan,  Sanchayita Sen,  Sameer Velankar,  Gerard J. Kleywegt, 
  • Pages: 710-721
  • First Published: 01 May 2013

research papers

The structure of cardiac troponin C regulatory domain with bound Cd2+ reveals a closed conformation and unique ion coordination

Xiaolu Linda Zhang,  Glen F. Tibbits,  Mark Paetzel, 
  • Pages: 722-734
  • First Published: 01 May 2013

Structural and functional characterization of HP0377, a thioredoxin-fold protein from Helicobacter pylori

Ji Young Yoon,  Jieun Kim,  Doo Ri An,  Sang Jae Lee,  Hyoun Sook Kim,  Ha Na Im,  Hye-Jin Yoon,  Jin Young Kim,  Soon-Jong Kim,  Byung Woo Han,  Se Won Suh, 
  • Pages: 735-746
  • First Published: 01 May 2013

Mechanism for controlling the monomer–dimer conversion of SARS coronavirus main protease

Cheng-Guo Wu,  Shu-Chun Cheng,  Shiang-Chuan Chen,  Juo-Yan Li,  Yi-Hsuan Fang,  Yau-Hung Chen,  Chi-Yuan Chou, 
  • Pages: 747-755
  • First Published: 01 May 2013

Atomic resolution structures of the c-Src SH3 domain in complex with two high-affinity peptides from classes I and II

Julio Bacarizo,  Ana Camara-Artigas, 
  • Pages: 756-766
  • First Published: 01 May 2013

The 1.6 Å resolution structure of a FRET-optimized Cerulean fluorescent protein

Jennifer L. Watkins,  Hanseong Kim,  Michele L. Markwardt,  Liqing Chen,  Raimund Fromme,  Mark A. Rizzo,  Rebekka M. Wachter, 
  • Pages: 767-773
  • First Published: 01 May 2013

The structure of the caspase recruitment domain of BinCARD reveals that all three cysteines can be oxidized

Kai-En Chen,  Ayanthi A. Richards,  Tom T. Caradoc-Davies,  Parimala R. Vajjhala,  Gautier Robin,  Linda H. L. Lua,  Justine M. Hill,  Kate Schroder,  Matthew J. Sweet,  Stuart Kellie,  Bostjan Kobe,  Jennifer Martin, 
  • Pages: 774-784
  • First Published: 01 May 2013

Structural analysis of malaria-parasite lysyl-tRNA synthetase provides a platform for drug development

Sameena Khan,  Ankur Garg,  Noelia Camacho,  Jason Van Rooyen,  Anil Kumar Pole,  Hassan Belrhali,  Lluis Ribas de Pouplana,  Vinay Sharma,  Amit Sharma, 
  • Pages: 785-795
  • First Published: 01 May 2013

AutoDrug: fully automated macromolecular crystallography workflows for fragment-based drug discovery

Yingssu Tsai,  Scott E. McPhillips,  Ana González,  Timothy M. McPhillips,  Daniel Zinn,  Aina E. Cohen,  Michael D. Feese,  David Bushnell,  Theresa Tiefenbrunn,  C. David Stout,  Bertram Ludaescher,  Britt Hedman,  Keith O. Hodgson,  S. Michael Soltis, 
  • Pages: 796-803
  • First Published: 01 May 2013

Structural basis of L-phosphoserine binding to Bacillus alcalophilus phosphoserine aminotransferase

Pradeep Battula,  Anatoly P. Dubnovitsky,  Anastassios C. Papageorgiou, 
  • Pages: 804-811
  • First Published: 01 May 2013
Open Access

Inhibition of a type III secretion system by the deletion of a short loop in one of its membrane proteins

Vladimir A. Meshcheryakov,  Akio Kitao,  Hideyuki Matsunami,  Fadel A. Samatey, 
  • Pages: 812-820
  • First Published: 01 May 2013

Structure of a complete four-domain chitinase from Moritella marina, a marine psychrophilic bacterium

Piotr H. Malecki,  Joanna E. Raczynska,  Constantinos E. Vorgias,  Wojciech Rypniewski, 
  • Pages: 821-829
  • First Published: 01 May 2013
Open Access

The structures of Arabidopsis Deg5 and Deg8 reveal new insights into HtrA proteases

Wei Sun,  Feng Gao,  Haitian Fan,  Xiaoyue Shan,  Renhua Sun,  Lin Liu,  Weimin Gong, 
  • Pages: 830-837
  • First Published: 01 May 2013

Anomalous signal from S atoms in protein crystallographic data from an X-ray free-electron laser

Thomas R. M. Barends,  Lutz Foucar,  Robert L. Shoeman,  Sadia Bari,  Sascha W. Epp,  Robert Hartmann,  Gunter Hauser,  Martin Huth,  Christian Kieser,  Lukas Lomb,  Koji Motomura,  Kiyonobu Nagaya,  Carlo Schmidt,  Rafael Strecker,  Denis Anielski,  Rebecca Boll,  Benjamin Erk,  Hironobu Fukuzawa,  Elisabeth Hartmann,  Takaki Hatsui,  Peter Holl,  Yuichi Inubushi,  Tetsuya Ishikawa,  Stephan Kassemeyer,  Christian Kaiser,  Frank Koeck,  Naoki Kunishima,  Moritz Kurka,  Daniel Rolles,  Benedikt Rudek,  Artem Rudenko,  Takahiro Sato,  Claus-Dieter Schroeter,  Heike Soltau,  Lothar Strueder,  Tomoyuki Tanaka,  Tadashi Togashi,  Kensuke Tono,  Joachim Ullrich,  Satoshi Yase,  Shin-ichi Wada,  Makoto Yao,  Makina Yabashi,  Kiyoshi Ueda,  Ilme Schlichting, 
  • Pages: 838-842
  • First Published: 01 May 2013

Towards protein-crystal centering using second-harmonic generation (SHG) microscopy

David J. Kissick,  Christopher M. Dettmar,  Michael Becker,  Anne M. Mulichak,  Vadim Cherezov,  Stephan L. Ginell,  Kevin P. Battaile,  Lisa J. Keefe,  Robert F. Fischetti,  Garth J. Simpson, 
  • Pages: 843-851
  • First Published: 01 May 2013

Imaging protein three-dimensional nanocrystals with cryo-EM

Igor Nederlof,  Yao Wang Li,  Marin van Heel,  Jan Pieter Abrahams, 
  • Pages: 852-859
  • First Published: 01 May 2013

Effects of cryoprotectants on the structure and thermostability of the human carbonic anhydrase II–acetazolamide complex

Mayank Aggarwal,  Christopher D. Boone,  Bhargav Kondeti,  Chingkuang Tu,  David N. Silverman,  Robert McKenna, 
  • Pages: 860-865
  • First Published: 01 May 2013

Structures of Enterovirus 71 3C proteinase (strain E2004104-TW-CDC) and its complex with rupintrivir

Caiming Wu,  Qixu Cai,  Chen Chen,  Ning Li,  Xuanjia Peng,  Yaxian Cai,  Ke Yin,  Xinsheng Chen,  Xiaolong Wang,  Rongfu Zhang,  Lijie Liu,  Shuhui Chen,  Jian Li,  Tianwei Lin, 
  • Pages: 866-871
  • First Published: 01 May 2013

On optimal placement of molecules in the unit cell

Zbigniew Dauter, 
  • Pages: 872-878
  • First Published: 01 May 2013

The structure of the SBP-Tag–streptavidin complex reveals a novel helical scaffold bridging binding pockets on separate subunits

Isabelle H. Barrette-Ng,  Sau-Ching Wu,  Wai-Mui Tjia,  Sui-Lam Wong,  Kenneth K. S. Ng, 
  • Pages: 879-887
  • First Published: 01 May 2013

Structural analysis of coniferyl alcohol 9-O-methyltransferase from Linum nodiflorum reveals a novel active-site environment

Stefan Wolters,  Manuel Neeb,  Anna Berim,  Johannes Schulze Wischeler,  Maike Petersen,  Andreas Heine, 
  • Pages: 888-900
  • First Published: 01 May 2013
Open Access

Camel and bovine chymosin: the relationship between their structures and cheese-making properties

Jesper Langholm Jensen,  Anne Mølgaard,  Jens-Christian Navarro Poulsen,  Marianne Kirsten Harboe,  Jens Bæk Simonsen,  Andrea Maria Lorentzen,  Karin Hjernø,  Johannes M. van den Brink,  Karsten Bruun Qvist,  Sine Larsen, 
  • Pages: 901-913
  • First Published: 01 May 2013

short communications

Integrated database of information from structural genomics experiments

Yukuhiko Asada,  Michihiro Sugahara,  Hisashi Mizutani,  Hisashi Naitow,  Tomoyuki Tanaka,  Yoshinori Matsuura,  Yoshihiro Agari,  Akio Ebihara,  Akeo Shinkai,  Seiki Kuramitsu,  Shigeyuki Yokoyama,  Eri Kaminuma,  Norio Kobayashi,  Koro Nishikata,  Sayoko Shimoyama,  Tetsuro Toyoda,  Tetsuya Ishikawa,  Naoki Kunishima, 
  • Pages: 914-919
  • First Published: 01 May 2013
Open Access

Using high-throughput in situ plate screening to evaluate the effect of dehydration on protein crystals

Alice Douangamath,  Pierre Aller,  Petra Lukacik,  Juan Sanchez-Weatherby,  Isabel Moraes,  Jose Brandao-Neto, 
  • Pages: 920-923
  • First Published: 01 May 2013

books received

Free Access

Visualizing the Invisible: Imaging Techniques for the Structural Biologist. By Peter B. Moore. Pp. 368. Oxford University Press, 2012. Price £45. ISBN 978-0-19-976709-0.

P. P. Paufler, 
  • Page: 924
  • First Published: 01 May 2013