Third Meeting on the Critical Assessment of PRedicted Interactions: Proteins: Structure, Function, and Bioinformatics: Vol 69, No 4

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Proteins: Structure, Function, and Bioinformatics: Volume 69, Issue 4

Special Issue:Third Meeting on the Critical Assessment of PRedicted Interactions

Editor's Corner

From the Mediterranean coast to the shores of Lake Ontario: CAPRI's premiere on the American continent

Research Articles

The targets of CAPRI rounds 6–12

Prediction Reports

Docking and scoring protein complexes: CAPRI 3rd Edition

Research Articles

The performance of ZDOCK and ZRANK in rounds 6–11 of CAPRI

HADDOCK versus HADDOCK: New features and performance of HADDOCK2.0 on the CAPRI targets

Docking with PIPER and refinement with SDU in rounds 6–11 of CAPRI

A holistic approach to protein docking

Implicit flexibility in protein docking: Cross-docking and local refinement

RosettaDock in CAPRI rounds 6–12

Automatic prediction of protein interactions with large scale motion ^†

Protein–protein docking in CAPRI using ATTRACT to account for global and local flexibility

ClusPro: Performance in CAPRI rounds 6–11 and the new server

Acidic groups docked to well defined wetted pockets at the core of the binding interface: A tale of scoring and missing protein interactions in CAPRI

Incorporating biochemical information and backbone flexibility in RosettaDock for CAPRI rounds 6–12

SOFTDOCK application to protein–protein interaction benchmark and CAPRI

Assessing the energy landscape of CAPRI targets by FunHunt

Protein–protein docking: Progress in CAPRI rounds 6–12 using a combination of methods: The introduction of steered solvated molecular dynamics

A general approach for developing system-specific functions to score protein–ligand docked complexes using support vector inductive logic programming

Docking of protein molecular surfaces with evolutionary trace analysis

Docking without docking: ISEARCH—prediction of interactions using known interfaces

DOCKGROUND system of databases for protein recognition studies: Unbound structures for docking

Prediction and scoring of docking poses with pyDock

A filter enhanced sampling and combinatorial scoring study for protein docking in CAPRI

The SKE-DOCK server and human teams based on a combined method of shape complementarity and free energy estimation

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Proteins: Structure, Function, and Bioinformatics

Journal list menu

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Proteins: Structure, Function, and Bioinformatics: Volume 69, Issue 4

Special Issue:Third Meeting on the Critical Assessment of PRedicted Interactions

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Editor's Corner

From the Mediterranean coast to the shores of Lake Ontario: CAPRI's premiere on the American continent

Research Articles

The targets of CAPRI rounds 6–12

Prediction Reports

Docking and scoring protein complexes: CAPRI 3rd Edition

Research Articles

The performance of ZDOCK and ZRANK in rounds 6–11 of CAPRI

HADDOCK versus HADDOCK: New features and performance of HADDOCK2.0 on the CAPRI targets

Docking with PIPER and refinement with SDU in rounds 6–11 of CAPRI

A holistic approach to protein docking

Implicit flexibility in protein docking: Cross-docking and local refinement

RosettaDock in CAPRI rounds 6–12

Automatic prediction of protein interactions with large scale motion†

Protein–protein docking in CAPRI using ATTRACT to account for global and local flexibility

ClusPro: Performance in CAPRI rounds 6–11 and the new server

Acidic groups docked to well defined wetted pockets at the core of the binding interface: A tale of scoring and missing protein interactions in CAPRI

Incorporating biochemical information and backbone flexibility in RosettaDock for CAPRI rounds 6–12

SOFTDOCK application to protein–protein interaction benchmark and CAPRI

Assessing the energy landscape of CAPRI targets by FunHunt

Protein–protein docking: Progress in CAPRI rounds 6–12 using a combination of methods: The introduction of steered solvated molecular dynamics

A general approach for developing system-specific functions to score protein–ligand docked complexes using support vector inductive logic programming

Docking of protein molecular surfaces with evolutionary trace analysis

Docking without docking: ISEARCH—prediction of interactions using known interfaces

DOCKGROUND system of databases for protein recognition studies: Unbound structures for docking

Prediction and scoring of docking poses with pyDock

A filter enhanced sampling and combinatorial scoring study for protein docking in CAPRI

The SKE-DOCK server and human teams based on a combined method of shape complementarity and free energy estimation

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Automatic prediction of protein interactions with large scale motion ^†