Total Synthesis of (−)-Caprazamycin A†
Hugh Nakamura
Graduate School of Pharmaceutical Sciences, Kyoto University, Yoshida, Sakyo-ku, Kyoto 606-8501 (Japan)
Search for more papers by this authorDr. Chihiro Tsukano
Graduate School of Pharmaceutical Sciences, Kyoto University, Yoshida, Sakyo-ku, Kyoto 606-8501 (Japan)
Search for more papers by this authorMotohiro Yasui
Graduate School of Pharmaceutical Sciences, Kyoto University, Yoshida, Sakyo-ku, Kyoto 606-8501 (Japan)
Search for more papers by this authorShinsuke Yokouchi
Graduate School of Pharmaceutical Sciences, Kyoto University, Yoshida, Sakyo-ku, Kyoto 606-8501 (Japan)
Search for more papers by this authorDr. Masayuki Igarashi
Institute of Microbial Chemistry (BIKAKEN), Kamiosaki, Shinagawa-ku, Tokyo 141-0021 (Japan)
Search for more papers by this authorCorresponding Author
Prof. Dr. Yoshiji Takemoto
Graduate School of Pharmaceutical Sciences, Kyoto University, Yoshida, Sakyo-ku, Kyoto 606-8501 (Japan)
Graduate School of Pharmaceutical Sciences, Kyoto University, Yoshida, Sakyo-ku, Kyoto 606-8501 (Japan)Search for more papers by this authorHugh Nakamura
Graduate School of Pharmaceutical Sciences, Kyoto University, Yoshida, Sakyo-ku, Kyoto 606-8501 (Japan)
Search for more papers by this authorDr. Chihiro Tsukano
Graduate School of Pharmaceutical Sciences, Kyoto University, Yoshida, Sakyo-ku, Kyoto 606-8501 (Japan)
Search for more papers by this authorMotohiro Yasui
Graduate School of Pharmaceutical Sciences, Kyoto University, Yoshida, Sakyo-ku, Kyoto 606-8501 (Japan)
Search for more papers by this authorShinsuke Yokouchi
Graduate School of Pharmaceutical Sciences, Kyoto University, Yoshida, Sakyo-ku, Kyoto 606-8501 (Japan)
Search for more papers by this authorDr. Masayuki Igarashi
Institute of Microbial Chemistry (BIKAKEN), Kamiosaki, Shinagawa-ku, Tokyo 141-0021 (Japan)
Search for more papers by this authorCorresponding Author
Prof. Dr. Yoshiji Takemoto
Graduate School of Pharmaceutical Sciences, Kyoto University, Yoshida, Sakyo-ku, Kyoto 606-8501 (Japan)
Graduate School of Pharmaceutical Sciences, Kyoto University, Yoshida, Sakyo-ku, Kyoto 606-8501 (Japan)Search for more papers by this authorThis work was supported by a Grant-in-Aid for Scientific Research (B) (JSPS KAKENHI no. 23390004, Y.T.), a Grant-in-Aid for JSPS fellows (H.N.) and Meiji Seika Pharma Award in Synthetic Organic Chemistry (Japan) (C.T.).
Abstract
Caprazamycin A has significant antibacterial activity against Mycobacterium tuberculosis (TB). The first total synthesis is herein reported and features a) the scalable preparation of the syn-β-hydroxy amino acid with a thiourea-catalyzed diastereoselective aldol reaction, b) construction of a diazepanone with an unstable fatty-acid side chain, and c) global deprotection with hydrogenation. This report provides a route for the synthesis of related liponucleoside antibiotics with fatty-acid side chains.
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References
- 1
- 1aM. Igarashi, N. Nakagawa, N. Doi, S. Hattori, H. Naganawa, M. Hamada, J. Antibiot. 2003, 56, 580;
- 1bT. Takeuchi, M. Igarashi, H. Naganawa, JP P2003-12687A, 2003;
- 1cM. Igarashi, Y. Takahashi, T. Shitara, H. Nakamura, H. Naganawa, T. Miyake, Y. Akamatsu, J. Antibiot. 2005, 58, 327;
- 1dC. Dini, Curr. Top. Med. Chem. 2005, 5, 1221;
- 1eT. D. H. Bugg, A. J. Lloyd, D. I. Roper, Infect. Disord.: Drug Targets 2006, 6, 85.
- 2
- 2aC. Dini, P. Collette, N. Drochon, J. C. Guillot, G. Lemoine, P. Mauvais, J. Aszodi, Bioorg. Med. Chem. Lett. 2000, 10, 1839;
- 2bY. Ishizaki, C. Hayashi, K. Inoue, M. Igarashi, Y. Takahashi, V. Pujari, D. C. Crick, P. J. Brennan, A. Nomoto, J. Biol. Chem. 2013, 288, 30309.
- 3K. Kimura, T. D. H. Bugg, Nat. Prod. Rep. 2003, 20, 252.
- 4
- 4aY. Takahashi, M. Igarashi, T. Miyake, H. Soutome, K. Ishikawa, Y. Komatsuki, Y. Koyama, N. Nakagawa, S. Hattori, K. Inoue, N. Doi, Y. Akamatsu, J. Antibiot. 2013, 66, 171;
- 4bS. N. M. Hanif, A. J. Hickey, L. Garcia-Contreras, J. Pharm. Biomed. Anal. 2014, 88, 370.
- 5Synthetic studies toward caprazamycins:
- 5aS. Hirano, S. Ichikawa, A. Matsuda, Bioorg. Med. Chem. 2008, 16, 5123;
- 5bS. Ichikawa, Chem. Pharm. Bull. 2008, 56, 1059;
- 5cK. Ii, S. Ichikawa, B. Al-Dabbagh, A. Bouhss, A. Matsuda, J. Med. Chem. 2010, 53, 3793;
- 5dA. P. Spork, S. Koppermann, B. Dittrich, R. Herbst-Irmer, C. Ducho, Tetrahedron: Asymmetry 2010, 21, 763;
- 5eF. Sarabia, C. Vivar-García, C. García-Ruiz, L. Martín-Ortiz, A. Romero-Carrasco, J. Org. Chem. 2012, 77, 1328;
- 5fC. Tsukano, S. Yokouchi, A. L. Girard, T. Kuribayashi, S. Sakamoto, T. Enomoto, Y. Takemoto, Org. Biomol. Chem. 2012, 10, 6074;
- 5gH. Miyaoka, J. Wada, E. Kawashima, Heterocycles 2014, 88, 719.
- 6Synthetic studies towards related liponucleoside antibiotics:
- 6aM. R. Spada, M. Ubukata, K. Isono, Heterocycles 1992, 34, 1147;
- 6bS. Knapp, S. Nandan, L. Resnick, Tetrahedron Lett. 1992, 33, 5485;
- 6cK. S. Kim, I. H. Cho, Y. H. Ahn, J. I. Park, J. Chem. Soc. Perkin Trans. 1 1995, 1783;
- 6dW. J. Moore, F. A. Luzzio, Tetrahedron Lett. 1995, 36, 6599;
- 6eK. S. Kim, C. S. Cheong, J. S. Hahn, J. I. Park, Bull. Korean Chem. Soc. 1997, 18, 465;
- 6fY. Le Merrer, C. Gravier-Pelletier, M. Gerrouache, J. C. Depezay, Tetrahedron Lett. 1998, 39, 385;
- 6gK. S. Kim, Y. H. Ahn, Tetrahedron: Asymmetry 1998, 9, 3601;
- 6hS. Knapp, G. J. Morriello, S. R. Nandan, T. J. Emge, G. A. Doss, R. T. Mosley, L. Chen, J. Org. Chem. 2001, 66, 5822;
- 6iC. Gravier-Pelletier, M. Milla, Y. L. Merrer, J. C. Depezay, Eur. J. Org. Chem. 2001, 3089;
- 6jS. Knapp, G. J. Morriello, G. A. Doss, Org. Lett. 2002, 4, 603;
- 6kB. Drouillat, O. Poupardin, Y. Bourdreux, C. Greck, Tetrahedron Lett. 2003, 31, 2781;
- 6lA. Yamashita, E. B. Norton, R. T. Williamson, D. M. Ho, S. Sinishtaj, T. S. Mansour, Org. Lett. 2003, 5, 3305;
- 6mF. Sarabia, L. Martin-Ortiz, F. J. Lopez-Herrera, Org. Lett. 2003, 5, 3927;
- 6nN. Nakajima, T. Isobe, S. Irisa, M. Ubukata, Heterocycles 2003, 59, 107;
- 6oS. Fukunishi, M. Ubukata, N. Nakajima, Heterocycles 2005, 66, 129;
- 6pY. Bourdreux, B. Drouillat, C. Greck, Lett. Org. Chem. 2006, 3, 368;
- 6qS. Fukunishi, M. Ubukata, N. Nakajima, Heterocycles 2007, 73, 627;
- 6rO. Monasson, M. Ginisty, G. Bertho, C. Gravier-Pelletier, Y. L. Merrer, Tetrahedron Lett. 2007, 48, 8149;
- 6sX. H. Xu, A. E. Trunkfield, T. D. H. Bugg, F. L. Qing, Org. Biomol. Chem. 2008, 6, 157;
- 6tO. Monasson, M. Ginisty, J. Mravljak, G. Bertho, C. Gravier-Pelletier, Y. L. Merrer, Tetrahedron: Asymmetry 2009, 20, 2320;
- 6uM. J. Fer, P. Doan, T. Prangé, S. Calvet-Vitale, C. Gravier-Pelletier, J. Org. Chem. 2014, 79, 7758;
- 6vA. P. Spork, M. Büschleb, O. Ries, D. Wiegmann, S. Boettcher, A. Mihalyi, T. D. H. Bugg, C. Ducho, Chem. Eur. J. 2014, 20, 15292.
- 7
- 7aS. Hirano, S. Ichikawa, A. Matsuda, Angew. Chem. Int. Ed. 2005, 44, 1854; Angew. Chem. 2005, 117, 1888;
- 7bS. Hirano, S. Ichikawa, A. Matsuda, J. Org. Chem. 2007, 72, 9936;
- 7cS. Hirano, S. Ichikawa, A. Matsuda, J. Org. Chem. 2008, 73, 569.
- 8
- 8aP. Gopinath, L. Wang, H. Abe, G. Ravi, T. Masuda, T. Watanabe, M. Shibasaki, Org. Lett. 2014, 16, 3364;
- 8bP. Gopinath, T. Watanabe, M. Shibasaki, J. Org. Chem. 2012, 77, 9260.
- 9
- 9aK. Isono, M. Uramoto, H. Kusakabe, K. Kimura, K. Izaki, C. C. Nelson, J. A. McCloskey, J. Antibiot. 1985, 38, 1617;
- 9bK. Kimura, Y. Ikeda, S. Kagami, M. Yoshihama, K. Suzuki, H. Osada, K. Isono, J. Antibiot. 1998, 51, 1099;
- 9cM. Ubukata, K. Kimura, K. Isono, C. C. Nelson, J. M. Gregson, J. A. McCloskey, J. Org. Chem. 1992, 57, 6392;
- 9dK. Kimura, Y. Ikeda, S. Kagami, M. Yoshihama, M. Ubukata, Y. Esumi, H. Osada, K. Isono, J. Antibiot. 1998, 51, 647;
- 9eK. Kimura, S. Kagami, Y. Ikeda, H. Takahashi, M. Yoshihama, H. Kusakabe, H. Osada, K. Isono, J. Antibiot. 1998, 51, 640.
- 10S. Sakamoto, N. Kazumi, Y. Kobayashi, C. Tsukano, Y. Takemoto, Org. Lett. 2014, 16, 4758.
- 11
- 11aR. Noyori, H. Takaya, Acc. Chem. Res. 1990, 23, 345;
- 11bV. Ratovelomanana-Vidal, C. Girard, R. Touati, J. P. Tranchier, B. Ben Hassine, J. P. Genêt, Adv. Synth. Catal. 2003, 345, 261.
- 12D. F. Taber, P. B. Deker, H. M. Fales, T. H. Jones, H. A. Lloyd, J. Org. Chem. 1988, 53, 2968.
- 13
- 13aS. H. Oh, H. S. Rho, J. W. Lee, J. E. Lee, S. H. Youk, J. Chin, C. E. Song, Angew. Chem. Int. Ed. 2008, 47, 7872; Angew. Chem. 2008, 120, 7990;
- 13bT. Honjo, T. Tsumura, S. Sano, Y. Nagao, K. Yamaguchi, Y. Sei, Synlett 2009, 3279.
- 14
- 14aM. S. Arias-Pérez, M. S. López, M. J. Santos, J. Chem. Soc. Perkin Trans. 2 2002, 1549;
- 14bD. A. Evans, W. C. Black, J. Am. Chem. Soc. 1993, 115, 4497.
- 15The aldehyde 9 was prepared from commercially available uridine in three steps. See the Supporting Information.
- 16T. Ohshima, T. Iwasaki, Y. Maegawa, A. Yoshiyama, K. Mashima, J. Am. Chem. Soc. 2008, 130, 2944.
- 17A. Devos, J. Remion, A.-M. Frisque-Hesbain, A. Colens, L. Ghosez, J. Chem. Soc. Chem. Commun. 1979, 1180.
- 18The amine 23 was synthesized from L-(+)-diethyl tartrate in ten steps. See the Supporting Information.
- 19The carboxylic acid 27 was prepared from the precursor of 4 and 5 as described by Shibasaki and Watanabe et al. See Ref. [8b].
- 20The NMR spectrum of caprazamycin A was dependent on concentration and pKa. Thus, the NMR spectra was determined using [D6]DMSO/D2O/DCO2D (20:1:1) for comparison. Also see the Supporting Information.
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