Chapter 5

Cryo-Electron Microscopy of the Translational Apparatus: Experimental Evidence for the Paths of mRNA, tRNA, and the Polypeptide Chain

Joachim Frank

Joachim Frank

Health Research, Inc., at the Wadsworth Center and Howard Hughes Medical Institute, Empire State Plaz, Albany, NY, 12201-0509

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Pawel Penczek

Pawel Penczek

Wadsworth Center, Empire State Plaza, Albany, NY, 12201-0509

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Robert A. Grassucci

Robert A. Grassucci

Health Research, Inc., at the Wadsworth Center and Howard Hughes Medical Institute, Empire State Plaz, Albany, NY, 12201-0509

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Amy Heagle

Amy Heagle

Health Research, Inc., at the Wadsworth Center and Howard Hughes Medical Institute, Empire State Plaz, Albany, NY, 12201-0509

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Christian M. T. Spahn

Christian M. T. Spahn

Health Research, Inc., at the Wadsworth Center and Howard Hughes Medical Institute, Empire State Plaz, Albany, NY, 12201-0509

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Rajendra K. Agrawal

Rajendra K. Agrawal

Wadsworth Center, Empire State Plaza, Albany, NY, 12201-0509

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First published: 27 March 2000
Citations: 1

Summary

As a process that brings together, in close proximity, two linear structures of considerable length (mRNA and the nascent polypeptide chain) and large protein factors (EF-G and aminoacyl-tRNA·EF-Tu·GTP ternary complex), protein synthesis poses a logistic problem of traffic control: how to guarantee uninterrupted, high-precision performance without steric interference and entanglement of the various ligands. Since cryo-electron microscopy (cryo-EM) visualization provided the first detailed three-dimensional (3-D) images of the ribosome, much work has gone into the mapping of tRNA and elongation factors bound to the ribosome at various stages of the elongation cycle. A recent study of a 70S ribosome carrying a genetically inserted tRNA-like RNA fragment furnished a higher-resolution (17-Å) map of the vacant ribosome, and the use of this new map in the subtraction produced a linear mass distribution covering the platform side segment of the mRNA path, as well as a mass hovering just at the entrance of the 30S subunit channel. tRNA bound to the ribosome has been directly visualized by 3-D cryo-EM in various tRNA-ribosome complexes. Visualization of the ribosome-bound tRNA is still a challenging task because the smallest dimension of the molecule is on the order of the resolution of cryo-EM and the occupancy of some tRNA binding states is intrinsically low.

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