Chapter 29

The States, Conformational Dynamics, and Fusidic Acid-Resistant Mutants of Elongation Factor G

Anders Liljas

Anders Liljas

Molecular Biophysics, Lund University, Box 124, SE-22100 Lund, Sweden

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Ole Kristensen

Ole Kristensen

Molecular Biophysics, Lund University, Box 124, SE-22100 Lund, Sweden

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Martin Laurberg

Martin Laurberg

Molecular Biophysics, Lund University, Box 124, SE-22100 Lund, Sweden

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Salam Al-Karadaghi

Salam Al-Karadaghi

Molecular Biophysics, Lund University, Box 124, SE-22100 Lund, Sweden

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Anatoly Gudkov

Anatoly Gudkov

Institute of Protein Research, Russian Academy of Sciences, Pushchino, Moscow Region, Russia

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Kirill Martemyanov

Kirill Martemyanov

Institute of Protein Research, Russian Academy of Sciences, Pushchino, Moscow Region, Russia

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Diarmaid Hughes

Diarmaid Hughes

Department of Cell and Molecular Biology, BMC, Uppsala University, Box 596, SE-75124 Uppsala, Sweden

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Ivan Nagaev

Ivan Nagaev

Department of Cell and Molecular Biology, BMC, Uppsala University, Box 596, SE-75124 Uppsala, Sweden

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First published: 27 March 2000
Citations: 1

Summary

This chapter summarizes the current knowledge and proposes a structural model for the function of elongation factor G (EF-G). The large number of mutations associated with fusidic acid resistance are an essential ingredient in this analysis. Recent investigations of a mutant EF-G with a different crystal packing have led to a complete interpretation of domain III at relatively low resolution. The functional cycle of EF-G can be described as a number of states both on and off the ribosome. The different states of EF-G may not necessarily be associated with different conformations of EF-G, but to the extent that there are different conformations, they will be related to different states. The density of EF-G could be identified with difference methods and compared to the crystallographic GDP conformation. The mutant G16V is fusidic acid sensitive compared to wt Thermus thermophilus EF-G, which is relatively resistant to the antibiotic. During one of the subsequent steps, EF-G adopts an open conformation like the one observed by cryo-EM. Since it overlaps the A-site tRNA, translocation must already have occurred, as is well known from studies of fusidic acid inhibition of protein synthesis. When EF-G has dissociated, it has the intermediate GDP conformation.

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