Volume 46, Issue 9 e14258
ORIGINAL ARTICLE

Network pharmacology-based study to identify the significant pathways of Lentinula edodes against cancer

Ki Kwang Oh

Ki Kwang Oh

Department of Bio-Health Convergence, College of Biomedical Science, Kangwon National University, Chuncheon, Korea

Contribution: Conceptualization, Data curation, Formal analysis, ​Investigation, Methodology, Software, Validation, Visualization, Writing - original draft

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Md Adnan

Md Adnan

Department of Bio-Health Convergence, College of Biomedical Science, Kangwon National University, Chuncheon, Korea

Contribution: Validation, Writing - review & editing

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Dong Ha Cho

Corresponding Author

Dong Ha Cho

Department of Bio-Health Convergence, College of Biomedical Science, Kangwon National University, Chuncheon, Korea

Correspondence

Dong Ha Cho, Department of Bio-Health Convergence, College of Biomedical Science, Kangwon National University, Chuncheon 24341, Korea.

Email: [email protected]

Contribution: ​Investigation, Supervision

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First published: 28 May 2022

Abstract

Lentinula edodes (LE) is known as a good food source with potent anticancer efficacy, but its active chemical compounds and pathways against cancer have not been revealed. This study was to uncover the active chemical constituents and pathways of LE against cancer through network pharmacology. The chemical compositions were recognized by gas chromatography–mass spectrometry (GC–MS) and filtered drug-like compounds (DLCs) by SwissADME. Targets related to filtered compounds were recognized by two public databases and the final overlapping targets were identified by Venn diagram. Then, protein–protein interaction (PPI) and pathway-target-compound (PTC) networks were built by RStudio. Ultimately, we recognized the key compounds and targets via molecular docking test (MDT). A total of 33 compounds from LE were accepted by Lipinski's rule were selected as DLCs. The 33 compounds were associated with 108 targets and a key target (cyclooxygenase2 [COX2]) was identified through PPI networks. Most significantly, inactivation of pathways in cancer and activation of peroxisome proliferator activated receptor signaling pathway were significant pathways of LE. On MDT, we identified a key compound (Indole, 2-methyl-3-phenyl) on COX2 related to inactivation of athways in cancer, additionally, the number of 6 ergostane steroids was associated with the two pathways might be dual efficacy to alleviate inflammation against cancer. Overall, 13 targets, 11 compounds, and 2 key pathways of LE were identified as the significant elements to treat cancer. Hence, this study shows therapeutic evidence to verify the promising clinical effect of LE on cancer, suggesting that LE might be an important mushroom against cancer.

Practical applications

Lentinula edodes (LE) has been used widely in cuisine as well as alternative medicines, especially, for anticancer. The LE has rich nutritional compounds including proteins, vitamins, polyphenols, and glucans, however, most of which have a critical hurdle as poor bioavailability not to be applicable for pharmaceuticals. Its main cause is very hydrophilic property. Thus, we adopted GC–MS analysis to identify lipophilic compounds to enhance cell permeability involved in bioavailability. The compounds selected from LE were confirmed by Lipinski's rule for drug-like-compounds (DLCs). Then, we retrieved targets associated with DLCs, and multiple pathways, multiple targets, and multiple compounds against cancer on network-based analysis.

In summary, our study reveals the medicinal value of LE on cancer based on the multicomponents. Overall, the aim of this work is to represent the pharmacological evidence to reveal the therapeutic efficacy of AC on cancer, suggesting that DLCs from AC might be alleviators to dampen cancer.

CONFLICT OF INTEREST

The author has declared that no competing interests exist.

DATA AVAILABILITY STATEMENT

All data generated or analyzed during this study are included in this published article (and its Supplementary Materials).

The full text of this article hosted at iucr.org is unavailable due to technical difficulties.