Biological concepts in human sodium channel epilepsies and their relevance in clinical practice
Corresponding Author
Andreas Brunklaus
Paediatric Neurosciences Research Group, Royal Hospital for Children, Glasgow, UK
School of Medicine, University of Glasgow, Glasgow, UK
Andreas Brunklaus, Juanjiangmeng Du and Dennis Lal contributed equally to this work
Correspondence
Andreas Brunklaus, Fraser of Allander Neurosciences Unit, Office Block, Ground Floor, Zone 2, Royal Hospital for Children, 1345 Govan Road, Glasgow G51 4TF, UK.
Email: [email protected]
Rikke S. Møller, Head of Department of Epilepsy Genetics and Personalized Medicine, Danish Epilepsy Centre/University of Southern Denmark, Medicine Kolonivej 1, 4293, Dianalund, Denmark.
Email: [email protected]
Dennis Lal, Genomic Medicine Institute, Cleveland Clinic Lerner College of Medicine of Case Western Reserve University, US, Epilepsy Institute, Cleveland Clinic, 9500 Euclid Ave, NE5-308, Cleveland, OH 44195, USA.
Emails: [email protected]; [email protected]
Search for more papers by this authorJuanjiangmeng Du
Cologne Center for Genomics, University of Cologne, University Hospital Cologne, Cologne, Germany
Andreas Brunklaus, Juanjiangmeng Du and Dennis Lal contributed equally to this work
Search for more papers by this authorFelix Steckler
Paediatric Neurosciences Research Group, Royal Hospital for Children, Glasgow, UK
School of Medicine, University of Glasgow, Glasgow, UK
Search for more papers by this authorIsmael I. Ghanty
Paediatric Neurosciences Research Group, Royal Hospital for Children, Glasgow, UK
School of Medicine, University of Glasgow, Glasgow, UK
Search for more papers by this authorKatrine M. Johannesen
Deparment of Epilepsy Genetics and Personalized Medicine, Danish Epilepsy Center Filadelfia, Dianalund, Denmark
Institute for Regional Health Services, University of Southern Denmark, Odense, Denmark
Search for more papers by this authorChristina Dühring Fenger
Deparment of Epilepsy Genetics and Personalized Medicine, Danish Epilepsy Center Filadelfia, Dianalund, Denmark
Amplexa Genetics, Odense, Denmark
Search for more papers by this authorStephanie Schorge
Department of Clinical and Experimental Epilepsy, Institute of Neurology, University College London, London, UK
School of Pharmacy, University College London, London, UK
Search for more papers by this authorDavid Baez-Nieto
Stanley Center for Psychiatric Research, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts
Search for more papers by this authorHao-Ran Wang
Stanley Center for Psychiatric Research, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts
Search for more papers by this authorAndrew Allen
Stanley Center for Psychiatric Research, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts
Search for more papers by this authorJen Q. Pan
Stanley Center for Psychiatric Research, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts
Search for more papers by this authorHolger Lerche
Department of Neurology and Epileptology, Hertie Institute for Clinical Brain Research, University of Tübingen, Germany
Search for more papers by this authorHenrike Heyne
Stanley Center for Psychiatric Research, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts
Analytic and Translational Genetics Unit, Massachusetts General Hospital, Boston, Massachusetts
Institute for Molecular Medicine Finland, University of Helsinki, Helsinki, Finland
Search for more papers by this authorJoseph D. Symonds
Paediatric Neurosciences Research Group, Royal Hospital for Children, Glasgow, UK
School of Medicine, University of Glasgow, Glasgow, UK
Search for more papers by this authorSameer M. Zuberi
Paediatric Neurosciences Research Group, Royal Hospital for Children, Glasgow, UK
School of Medicine, University of Glasgow, Glasgow, UK
Search for more papers by this authorStephan Sanders
Department of Psychiatry, UCSF Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, California
Search for more papers by this authorBeth R. Sheidley
Epilepsy Genetics Program, Division of Epilepsy and Clinical Neurophysiology, Department of Neurology, Boston Children's Hospital, Boston, Massachusetts
Search for more papers by this authorDana Craiu
Carol Davila University of Medicine, Department of Clinical Neurosciences, Pediatric Neurology Discipline, Bucharest, Romania
Alexandru Obregia Hospital, Pediatric Neurology Clinic, Bucharest, Romania
Search for more papers by this authorHeather E. Olson
Epilepsy Genetics Program, Division of Epilepsy and Clinical Neurophysiology, Department of Neurology, Boston Children's Hospital, Boston, Massachusetts
Search for more papers by this authorSarah Weckhuysen
Neurogenetics Group, Center for Molecular Neurology, VIB, Antwerp, Belgium
Laboratory of Neurogenetics, Institute Born-Bunge, University of Antwerp, Antwerp, Belgium
Department of Neurology, University Hospital Antwerp, Antwerp, Belgium
Search for more papers by this authorPeter DeJonge
Neurogenetics Group, Center for Molecular Neurology, VIB, Antwerp, Belgium
Laboratory of Neurogenetics, Institute Born-Bunge, University of Antwerp, Antwerp, Belgium
Department of Neurology, University Hospital Antwerp, Antwerp, Belgium
Search for more papers by this authorIngo Helbig
Division of Neurology, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania
Epilepsy NeuroGenetics Initiative, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania
Department of Biomedical and Health Informatics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania
Department of Neurology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania
Department of Neuropediatrics, University of Kiel, Kiel, Germany
Search for more papers by this authorHilde Van Esch
Department of Human Genetics and Center for Human Genetics, Laboratory for Genetics of Cognition, University Hospitals Leuven, Leuven, Belgium
Search for more papers by this authorTiffany Busa
Genetics Department, Timone Enfants University Hospital Center, Public Assistance–Marseille Hospitals, Marseille, France
Search for more papers by this authorMatthieu Milh
Medical Genetics and Functional Genomics, National Institute of Health and Medical Research, Mixed Unit of Research S910, Aix-Marseille University, Marseille, France
Hematology Laboratory, Le Mans Hospital Center, Le Mans, France
Search for more papers by this authorBertrand Isidor
Medical Genetics Department, Nantes University Hospital Center, Nantes, France
Search for more papers by this authorChristel Depienne
Institute of Human Genetics, Essen University Hospital, Essen, Germany
Brain and Spinal Cord Institute, National Institute of Health and Medical Research, Unit 1127, National Center for Scientific Research, Mixed Unit of Research 7225, Sorbonne Universities, Pierre and Marie Curie University, Mixed Unit of Research S 1127, Brain & Spine Institute, Paris, France
Search for more papers by this authorAnnapurna Poduri
Epilepsy Genetics Program, Division of Epilepsy and Clinical Neurophysiology, Department of Neurology, Boston Children's Hospital, Boston, Massachusetts
Harvard Medical School, Boston, Massachusetts
Search for more papers by this authorArthur J. Campbell
School of Pharmacy, University College London, London, UK
Search for more papers by this authorJordane Dimidschstein
Stanley Center for Psychiatric Research, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts
Search for more papers by this authorCorresponding Author
Rikke S. Møller
Deparment of Epilepsy Genetics and Personalized Medicine, Danish Epilepsy Center Filadelfia, Dianalund, Denmark
Institute for Regional Health Services, University of Southern Denmark, Odense, Denmark
Correspondence
Andreas Brunklaus, Fraser of Allander Neurosciences Unit, Office Block, Ground Floor, Zone 2, Royal Hospital for Children, 1345 Govan Road, Glasgow G51 4TF, UK.
Email: [email protected]
Rikke S. Møller, Head of Department of Epilepsy Genetics and Personalized Medicine, Danish Epilepsy Centre/University of Southern Denmark, Medicine Kolonivej 1, 4293, Dianalund, Denmark.
Email: [email protected]
Dennis Lal, Genomic Medicine Institute, Cleveland Clinic Lerner College of Medicine of Case Western Reserve University, US, Epilepsy Institute, Cleveland Clinic, 9500 Euclid Ave, NE5-308, Cleveland, OH 44195, USA.
Emails: [email protected]; [email protected]
Search for more papers by this authorCorresponding Author
Dennis Lal
Cologne Center for Genomics, University of Cologne, University Hospital Cologne, Cologne, Germany
Stanley Center for Psychiatric Research, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts
Analytic and Translational Genetics Unit, Massachusetts General Hospital, Boston, Massachusetts
Epilepsy Center, Neurological Institute, Cleveland Clinic, Cleveland, Ohio
Genomic Medicine Institute, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio
Andreas Brunklaus, Juanjiangmeng Du and Dennis Lal contributed equally to this work
Correspondence
Andreas Brunklaus, Fraser of Allander Neurosciences Unit, Office Block, Ground Floor, Zone 2, Royal Hospital for Children, 1345 Govan Road, Glasgow G51 4TF, UK.
Email: [email protected]
Rikke S. Møller, Head of Department of Epilepsy Genetics and Personalized Medicine, Danish Epilepsy Centre/University of Southern Denmark, Medicine Kolonivej 1, 4293, Dianalund, Denmark.
Email: [email protected]
Dennis Lal, Genomic Medicine Institute, Cleveland Clinic Lerner College of Medicine of Case Western Reserve University, US, Epilepsy Institute, Cleveland Clinic, 9500 Euclid Ave, NE5-308, Cleveland, OH 44195, USA.
Emails: [email protected]; [email protected]
Search for more papers by this authorCorresponding Author
Andreas Brunklaus
Paediatric Neurosciences Research Group, Royal Hospital for Children, Glasgow, UK
School of Medicine, University of Glasgow, Glasgow, UK
Andreas Brunklaus, Juanjiangmeng Du and Dennis Lal contributed equally to this work
Correspondence
Andreas Brunklaus, Fraser of Allander Neurosciences Unit, Office Block, Ground Floor, Zone 2, Royal Hospital for Children, 1345 Govan Road, Glasgow G51 4TF, UK.
Email: [email protected]
Rikke S. Møller, Head of Department of Epilepsy Genetics and Personalized Medicine, Danish Epilepsy Centre/University of Southern Denmark, Medicine Kolonivej 1, 4293, Dianalund, Denmark.
Email: [email protected]
Dennis Lal, Genomic Medicine Institute, Cleveland Clinic Lerner College of Medicine of Case Western Reserve University, US, Epilepsy Institute, Cleveland Clinic, 9500 Euclid Ave, NE5-308, Cleveland, OH 44195, USA.
Emails: [email protected]; [email protected]
Search for more papers by this authorJuanjiangmeng Du
Cologne Center for Genomics, University of Cologne, University Hospital Cologne, Cologne, Germany
Andreas Brunklaus, Juanjiangmeng Du and Dennis Lal contributed equally to this work
Search for more papers by this authorFelix Steckler
Paediatric Neurosciences Research Group, Royal Hospital for Children, Glasgow, UK
School of Medicine, University of Glasgow, Glasgow, UK
Search for more papers by this authorIsmael I. Ghanty
Paediatric Neurosciences Research Group, Royal Hospital for Children, Glasgow, UK
School of Medicine, University of Glasgow, Glasgow, UK
Search for more papers by this authorKatrine M. Johannesen
Deparment of Epilepsy Genetics and Personalized Medicine, Danish Epilepsy Center Filadelfia, Dianalund, Denmark
Institute for Regional Health Services, University of Southern Denmark, Odense, Denmark
Search for more papers by this authorChristina Dühring Fenger
Deparment of Epilepsy Genetics and Personalized Medicine, Danish Epilepsy Center Filadelfia, Dianalund, Denmark
Amplexa Genetics, Odense, Denmark
Search for more papers by this authorStephanie Schorge
Department of Clinical and Experimental Epilepsy, Institute of Neurology, University College London, London, UK
School of Pharmacy, University College London, London, UK
Search for more papers by this authorDavid Baez-Nieto
Stanley Center for Psychiatric Research, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts
Search for more papers by this authorHao-Ran Wang
Stanley Center for Psychiatric Research, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts
Search for more papers by this authorAndrew Allen
Stanley Center for Psychiatric Research, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts
Search for more papers by this authorJen Q. Pan
Stanley Center for Psychiatric Research, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts
Search for more papers by this authorHolger Lerche
Department of Neurology and Epileptology, Hertie Institute for Clinical Brain Research, University of Tübingen, Germany
Search for more papers by this authorHenrike Heyne
Stanley Center for Psychiatric Research, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts
Analytic and Translational Genetics Unit, Massachusetts General Hospital, Boston, Massachusetts
Institute for Molecular Medicine Finland, University of Helsinki, Helsinki, Finland
Search for more papers by this authorJoseph D. Symonds
Paediatric Neurosciences Research Group, Royal Hospital for Children, Glasgow, UK
School of Medicine, University of Glasgow, Glasgow, UK
Search for more papers by this authorSameer M. Zuberi
Paediatric Neurosciences Research Group, Royal Hospital for Children, Glasgow, UK
School of Medicine, University of Glasgow, Glasgow, UK
Search for more papers by this authorStephan Sanders
Department of Psychiatry, UCSF Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, California
Search for more papers by this authorBeth R. Sheidley
Epilepsy Genetics Program, Division of Epilepsy and Clinical Neurophysiology, Department of Neurology, Boston Children's Hospital, Boston, Massachusetts
Search for more papers by this authorDana Craiu
Carol Davila University of Medicine, Department of Clinical Neurosciences, Pediatric Neurology Discipline, Bucharest, Romania
Alexandru Obregia Hospital, Pediatric Neurology Clinic, Bucharest, Romania
Search for more papers by this authorHeather E. Olson
Epilepsy Genetics Program, Division of Epilepsy and Clinical Neurophysiology, Department of Neurology, Boston Children's Hospital, Boston, Massachusetts
Search for more papers by this authorSarah Weckhuysen
Neurogenetics Group, Center for Molecular Neurology, VIB, Antwerp, Belgium
Laboratory of Neurogenetics, Institute Born-Bunge, University of Antwerp, Antwerp, Belgium
Department of Neurology, University Hospital Antwerp, Antwerp, Belgium
Search for more papers by this authorPeter DeJonge
Neurogenetics Group, Center for Molecular Neurology, VIB, Antwerp, Belgium
Laboratory of Neurogenetics, Institute Born-Bunge, University of Antwerp, Antwerp, Belgium
Department of Neurology, University Hospital Antwerp, Antwerp, Belgium
Search for more papers by this authorIngo Helbig
Division of Neurology, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania
Epilepsy NeuroGenetics Initiative, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania
Department of Biomedical and Health Informatics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania
Department of Neurology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania
Department of Neuropediatrics, University of Kiel, Kiel, Germany
Search for more papers by this authorHilde Van Esch
Department of Human Genetics and Center for Human Genetics, Laboratory for Genetics of Cognition, University Hospitals Leuven, Leuven, Belgium
Search for more papers by this authorTiffany Busa
Genetics Department, Timone Enfants University Hospital Center, Public Assistance–Marseille Hospitals, Marseille, France
Search for more papers by this authorMatthieu Milh
Medical Genetics and Functional Genomics, National Institute of Health and Medical Research, Mixed Unit of Research S910, Aix-Marseille University, Marseille, France
Hematology Laboratory, Le Mans Hospital Center, Le Mans, France
Search for more papers by this authorBertrand Isidor
Medical Genetics Department, Nantes University Hospital Center, Nantes, France
Search for more papers by this authorChristel Depienne
Institute of Human Genetics, Essen University Hospital, Essen, Germany
Brain and Spinal Cord Institute, National Institute of Health and Medical Research, Unit 1127, National Center for Scientific Research, Mixed Unit of Research 7225, Sorbonne Universities, Pierre and Marie Curie University, Mixed Unit of Research S 1127, Brain & Spine Institute, Paris, France
Search for more papers by this authorAnnapurna Poduri
Epilepsy Genetics Program, Division of Epilepsy and Clinical Neurophysiology, Department of Neurology, Boston Children's Hospital, Boston, Massachusetts
Harvard Medical School, Boston, Massachusetts
Search for more papers by this authorArthur J. Campbell
School of Pharmacy, University College London, London, UK
Search for more papers by this authorJordane Dimidschstein
Stanley Center for Psychiatric Research, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts
Search for more papers by this authorCorresponding Author
Rikke S. Møller
Deparment of Epilepsy Genetics and Personalized Medicine, Danish Epilepsy Center Filadelfia, Dianalund, Denmark
Institute for Regional Health Services, University of Southern Denmark, Odense, Denmark
Correspondence
Andreas Brunklaus, Fraser of Allander Neurosciences Unit, Office Block, Ground Floor, Zone 2, Royal Hospital for Children, 1345 Govan Road, Glasgow G51 4TF, UK.
Email: [email protected]
Rikke S. Møller, Head of Department of Epilepsy Genetics and Personalized Medicine, Danish Epilepsy Centre/University of Southern Denmark, Medicine Kolonivej 1, 4293, Dianalund, Denmark.
Email: [email protected]
Dennis Lal, Genomic Medicine Institute, Cleveland Clinic Lerner College of Medicine of Case Western Reserve University, US, Epilepsy Institute, Cleveland Clinic, 9500 Euclid Ave, NE5-308, Cleveland, OH 44195, USA.
Emails: [email protected]; [email protected]
Search for more papers by this authorCorresponding Author
Dennis Lal
Cologne Center for Genomics, University of Cologne, University Hospital Cologne, Cologne, Germany
Stanley Center for Psychiatric Research, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts
Analytic and Translational Genetics Unit, Massachusetts General Hospital, Boston, Massachusetts
Epilepsy Center, Neurological Institute, Cleveland Clinic, Cleveland, Ohio
Genomic Medicine Institute, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio
Andreas Brunklaus, Juanjiangmeng Du and Dennis Lal contributed equally to this work
Correspondence
Andreas Brunklaus, Fraser of Allander Neurosciences Unit, Office Block, Ground Floor, Zone 2, Royal Hospital for Children, 1345 Govan Road, Glasgow G51 4TF, UK.
Email: [email protected]
Rikke S. Møller, Head of Department of Epilepsy Genetics and Personalized Medicine, Danish Epilepsy Centre/University of Southern Denmark, Medicine Kolonivej 1, 4293, Dianalund, Denmark.
Email: [email protected]
Dennis Lal, Genomic Medicine Institute, Cleveland Clinic Lerner College of Medicine of Case Western Reserve University, US, Epilepsy Institute, Cleveland Clinic, 9500 Euclid Ave, NE5-308, Cleveland, OH 44195, USA.
Emails: [email protected]; [email protected]
Search for more papers by this authorFunding information
J.Du was supported by the Koeln Fortune (grant number 241/2017).
Abstract
Objective
Voltage-gated sodium channels (SCNs) share similar amino acid sequence, structure, and function. Genetic variants in the four human brain-expressed SCN genes SCN1A/2A/3A/8A have been associated with heterogeneous epilepsy phenotypes and neurodevelopmental disorders. To better understand the biology of seizure susceptibility in SCN-related epilepsies, our aim was to determine similarities and differences between sodium channel disorders, allowing us to develop a broader perspective on precision treatment than on an individual gene level alone.
Methods
We analyzed genotype-phenotype correlations in large SCN-patient cohorts and applied variant constraint analysis to identify severe sodium channel disease. We examined temporal patterns of human SCN expression and correlated functional data from in vitro studies with clinical phenotypes across different sodium channel disorders.
Results
Comparing 865 epilepsy patients (504 SCN1A, 140 SCN2A, 171 SCN8A, four SCN3A, 46 copy number variation [CNV] cases) and analysis of 114 functional studies allowed us to identify common patterns of presentation. All four epilepsy-associated SCN genes demonstrated significant constraint in both protein truncating and missense variation when compared to other SCN genes. We observed that age at seizure onset is related to SCN gene expression over time. Individuals with gain-of-function SCN2A/3A/8A missense variants or CNV duplications share similar characteristics, most frequently present with early onset epilepsy (<3 months), and demonstrate good response to sodium channel blockers (SCBs). Direct comparison of corresponding SCN variants across different SCN subtypes illustrates that the functional effects of variants in corresponding channel locations are similar; however, their clinical manifestation differs, depending on their role in different types of neurons in which they are expressed.
Significance
Variant function and location within one channel can serve as a surrogate for variant effects across related sodium channels. Taking a broader view on precision treatment suggests that in those patients with a suspected underlying genetic epilepsy presenting with neonatal or early onset seizures (<3 months), SCBs should be considered.
CONFLICT OF INTEREST
None of the authors has any conflict of interest to disclose. We confirm that we have read the Journal's position on issues involved in ethical publication and affirm that this report is consistent with those guidelines.
Supporting Information
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