Volume 61, Issue 3 pp. 387-399
FULL-LENGTH ORIGINAL RESEARCH

Biological concepts in human sodium channel epilepsies and their relevance in clinical practice

Andreas Brunklaus

Corresponding Author

Andreas Brunklaus

Paediatric Neurosciences Research Group, Royal Hospital for Children, Glasgow, UK

School of Medicine, University of Glasgow, Glasgow, UK

Andreas Brunklaus, Juanjiangmeng Du and Dennis Lal contributed equally to this work

Correspondence

Andreas Brunklaus, Fraser of Allander Neurosciences Unit, Office Block, Ground Floor, Zone 2, Royal Hospital for Children, 1345 Govan Road, Glasgow G51 4TF, UK.

Email: [email protected]

Rikke S. Møller, Head of Department of Epilepsy Genetics and Personalized Medicine, Danish Epilepsy Centre/University of Southern Denmark, Medicine Kolonivej 1, 4293, Dianalund, Denmark.

Email: [email protected]

Dennis Lal, Genomic Medicine Institute, Cleveland Clinic Lerner College of Medicine of Case Western Reserve University, US, Epilepsy Institute, Cleveland Clinic, 9500 Euclid Ave, NE5-308, Cleveland, OH 44195, USA.

Emails: [email protected]; [email protected]

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Juanjiangmeng Du

Juanjiangmeng Du

Cologne Center for Genomics, University of Cologne, University Hospital Cologne, Cologne, Germany

Andreas Brunklaus, Juanjiangmeng Du and Dennis Lal contributed equally to this work

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Felix Steckler

Felix Steckler

Paediatric Neurosciences Research Group, Royal Hospital for Children, Glasgow, UK

School of Medicine, University of Glasgow, Glasgow, UK

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Ismael I. Ghanty

Ismael I. Ghanty

Paediatric Neurosciences Research Group, Royal Hospital for Children, Glasgow, UK

School of Medicine, University of Glasgow, Glasgow, UK

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Katrine M. Johannesen

Katrine M. Johannesen

Deparment of Epilepsy Genetics and Personalized Medicine, Danish Epilepsy Center Filadelfia, Dianalund, Denmark

Institute for Regional Health Services, University of Southern Denmark, Odense, Denmark

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Christina Dühring Fenger

Christina Dühring Fenger

Deparment of Epilepsy Genetics and Personalized Medicine, Danish Epilepsy Center Filadelfia, Dianalund, Denmark

Amplexa Genetics, Odense, Denmark

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Stephanie Schorge

Stephanie Schorge

Department of Clinical and Experimental Epilepsy, Institute of Neurology, University College London, London, UK

School of Pharmacy, University College London, London, UK

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David Baez-Nieto

David Baez-Nieto

Stanley Center for Psychiatric Research, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts

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Hao-Ran Wang

Hao-Ran Wang

Stanley Center for Psychiatric Research, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts

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Andrew Allen

Andrew Allen

Stanley Center for Psychiatric Research, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts

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Jen Q. Pan

Jen Q. Pan

Stanley Center for Psychiatric Research, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts

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Holger Lerche

Holger Lerche

Department of Neurology and Epileptology, Hertie Institute for Clinical Brain Research, University of Tübingen, Germany

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Henrike Heyne

Henrike Heyne

Stanley Center for Psychiatric Research, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts

Analytic and Translational Genetics Unit, Massachusetts General Hospital, Boston, Massachusetts

Institute for Molecular Medicine Finland, University of Helsinki, Helsinki, Finland

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Joseph D. Symonds

Joseph D. Symonds

Paediatric Neurosciences Research Group, Royal Hospital for Children, Glasgow, UK

School of Medicine, University of Glasgow, Glasgow, UK

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Sameer M. Zuberi

Sameer M. Zuberi

Paediatric Neurosciences Research Group, Royal Hospital for Children, Glasgow, UK

School of Medicine, University of Glasgow, Glasgow, UK

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Stephan Sanders

Stephan Sanders

Department of Psychiatry, UCSF Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, California

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Beth R. Sheidley

Beth R. Sheidley

Epilepsy Genetics Program, Division of Epilepsy and Clinical Neurophysiology, Department of Neurology, Boston Children's Hospital, Boston, Massachusetts

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Dana Craiu

Dana Craiu

Carol Davila University of Medicine, Department of Clinical Neurosciences, Pediatric Neurology Discipline, Bucharest, Romania

Alexandru Obregia Hospital, Pediatric Neurology Clinic, Bucharest, Romania

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Heather E. Olson

Heather E. Olson

Epilepsy Genetics Program, Division of Epilepsy and Clinical Neurophysiology, Department of Neurology, Boston Children's Hospital, Boston, Massachusetts

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Sarah Weckhuysen

Sarah Weckhuysen

Neurogenetics Group, Center for Molecular Neurology, VIB, Antwerp, Belgium

Laboratory of Neurogenetics, Institute Born-Bunge, University of Antwerp, Antwerp, Belgium

Department of Neurology, University Hospital Antwerp, Antwerp, Belgium

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Peter DeJonge

Peter DeJonge

Neurogenetics Group, Center for Molecular Neurology, VIB, Antwerp, Belgium

Laboratory of Neurogenetics, Institute Born-Bunge, University of Antwerp, Antwerp, Belgium

Department of Neurology, University Hospital Antwerp, Antwerp, Belgium

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Ingo Helbig

Ingo Helbig

Division of Neurology, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania

Epilepsy NeuroGenetics Initiative, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania

Department of Biomedical and Health Informatics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania

Department of Neurology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania

Department of Neuropediatrics, University of Kiel, Kiel, Germany

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Hilde Van Esch

Hilde Van Esch

Department of Human Genetics and Center for Human Genetics, Laboratory for Genetics of Cognition, University Hospitals Leuven, Leuven, Belgium

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Tiffany Busa

Tiffany Busa

Genetics Department, Timone Enfants University Hospital Center, Public Assistance–Marseille Hospitals, Marseille, France

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Matthieu Milh

Matthieu Milh

Medical Genetics and Functional Genomics, National Institute of Health and Medical Research, Mixed Unit of Research S910, Aix-Marseille University, Marseille, France

Hematology Laboratory, Le Mans Hospital Center, Le Mans, France

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Bertrand Isidor

Bertrand Isidor

Medical Genetics Department, Nantes University Hospital Center, Nantes, France

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Christel Depienne

Christel Depienne

Institute of Human Genetics, Essen University Hospital, Essen, Germany

Brain and Spinal Cord Institute, National Institute of Health and Medical Research, Unit 1127, National Center for Scientific Research, Mixed Unit of Research 7225, Sorbonne Universities, Pierre and Marie Curie University, Mixed Unit of Research S 1127, Brain & Spine Institute, Paris, France

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Annapurna Poduri

Annapurna Poduri

Epilepsy Genetics Program, Division of Epilepsy and Clinical Neurophysiology, Department of Neurology, Boston Children's Hospital, Boston, Massachusetts

Harvard Medical School, Boston, Massachusetts

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Arthur J. Campbell

Arthur J. Campbell

School of Pharmacy, University College London, London, UK

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Jordane Dimidschstein

Jordane Dimidschstein

Stanley Center for Psychiatric Research, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts

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Rikke S. Møller

Corresponding Author

Rikke S. Møller

Deparment of Epilepsy Genetics and Personalized Medicine, Danish Epilepsy Center Filadelfia, Dianalund, Denmark

Institute for Regional Health Services, University of Southern Denmark, Odense, Denmark

Correspondence

Andreas Brunklaus, Fraser of Allander Neurosciences Unit, Office Block, Ground Floor, Zone 2, Royal Hospital for Children, 1345 Govan Road, Glasgow G51 4TF, UK.

Email: [email protected]

Rikke S. Møller, Head of Department of Epilepsy Genetics and Personalized Medicine, Danish Epilepsy Centre/University of Southern Denmark, Medicine Kolonivej 1, 4293, Dianalund, Denmark.

Email: [email protected]

Dennis Lal, Genomic Medicine Institute, Cleveland Clinic Lerner College of Medicine of Case Western Reserve University, US, Epilepsy Institute, Cleveland Clinic, 9500 Euclid Ave, NE5-308, Cleveland, OH 44195, USA.

Emails: [email protected]; [email protected]

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Dennis Lal

Corresponding Author

Dennis Lal

Cologne Center for Genomics, University of Cologne, University Hospital Cologne, Cologne, Germany

Stanley Center for Psychiatric Research, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts

Analytic and Translational Genetics Unit, Massachusetts General Hospital, Boston, Massachusetts

Epilepsy Center, Neurological Institute, Cleveland Clinic, Cleveland, Ohio

Genomic Medicine Institute, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio

Andreas Brunklaus, Juanjiangmeng Du and Dennis Lal contributed equally to this work

Correspondence

Andreas Brunklaus, Fraser of Allander Neurosciences Unit, Office Block, Ground Floor, Zone 2, Royal Hospital for Children, 1345 Govan Road, Glasgow G51 4TF, UK.

Email: [email protected]

Rikke S. Møller, Head of Department of Epilepsy Genetics and Personalized Medicine, Danish Epilepsy Centre/University of Southern Denmark, Medicine Kolonivej 1, 4293, Dianalund, Denmark.

Email: [email protected]

Dennis Lal, Genomic Medicine Institute, Cleveland Clinic Lerner College of Medicine of Case Western Reserve University, US, Epilepsy Institute, Cleveland Clinic, 9500 Euclid Ave, NE5-308, Cleveland, OH 44195, USA.

Emails: [email protected]; [email protected]

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First published: 23 February 2020
Citations: 73

Funding information

J.Du was supported by the Koeln Fortune (grant number 241/2017).

Abstract

Objective

Voltage-gated sodium channels (SCNs) share similar amino acid sequence, structure, and function. Genetic variants in the four human brain-expressed SCN genes SCN1A/2A/3A/8A have been associated with heterogeneous epilepsy phenotypes and neurodevelopmental disorders. To better understand the biology of seizure susceptibility in SCN-related epilepsies, our aim was to determine similarities and differences between sodium channel disorders, allowing us to develop a broader perspective on precision treatment than on an individual gene level alone.

Methods

We analyzed genotype-phenotype correlations in large SCN-patient cohorts and applied variant constraint analysis to identify severe sodium channel disease. We examined temporal patterns of human SCN expression and correlated functional data from in vitro studies with clinical phenotypes across different sodium channel disorders.

Results

Comparing 865 epilepsy patients (504 SCN1A, 140 SCN2A, 171 SCN8A, four SCN3A, 46 copy number variation [CNV] cases) and analysis of 114 functional studies allowed us to identify common patterns of presentation. All four epilepsy-associated SCN genes demonstrated significant constraint in both protein truncating and missense variation when compared to other SCN genes. We observed that age at seizure onset is related to SCN gene expression over time. Individuals with gain-of-function SCN2A/3A/8A missense variants or CNV duplications share similar characteristics, most frequently present with early onset epilepsy (<3 months), and demonstrate good response to sodium channel blockers (SCBs). Direct comparison of corresponding SCN variants across different SCN subtypes illustrates that the functional effects of variants in corresponding channel locations are similar; however, their clinical manifestation differs, depending on their role in different types of neurons in which they are expressed.

Significance

Variant function and location within one channel can serve as a surrogate for variant effects across related sodium channels. Taking a broader view on precision treatment suggests that in those patients with a suspected underlying genetic epilepsy presenting with neonatal or early onset seizures (<3 months), SCBs should be considered.

CONFLICT OF INTEREST

None of the authors has any conflict of interest to disclose. We confirm that we have read the Journal's position on issues involved in ethical publication and affirm that this report is consistent with those guidelines.

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