• Issue

    Molecular Ecology Resources: Volume 21, Issue 3

    i-ii, 637-1000
    April 2021
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ISSUE INFORMATION

Free Access

Cover Image

  • Pages: i-ii
  • First Published: 11 March 2021
Cover Image

Cover Illustration:

Draba nivalis growing on a rocky slope in Northern Sweden.

Photo Credit: A.Lovisa S.Gustafsson

NEWS AND VIEWS

Perspective

Free Access

New model species for arctic-alpine plant molecular ecology

Tanja Pyhäjärvi,  Tiina M. Mattila, 
  • Pages: 637-640
  • First Published: 27 January 2021

Opinion

Free Access

The changing face of genome assemblies: Guidance on achieving high-quality reference genomes

Annabel Whibley,  Joanna L. Kelley,  Shawn R. Narum, 
  • Pages: 641-652
  • First Published: 16 December 2020
Free Access

Sequencing platform shifts provide opportunities but pose challenges for combining genomic data sets

Rishi De-Kayne,  David Frei,  Ryan Greenway,  Sofia L. Mendes,  Cas Retel,  Philine G. D. Feulner, 
  • Pages: 653-660
  • First Published: 13 December 2020

FROM THE COVER

Open Access

The genome of Draba nivalis shows signatures of adaptation to the extreme environmental stresses of the Arctic

Michael D. Nowak,  Siri Birkeland,  Terezie Mandáková,  Rimjhim Roy Choudhury,  Xinyi Guo,  Anna Lovisa S. Gustafsson,  Abel Gizaw,  Audun Schrøder-Nielsen,  Marco Fracassetti,  Anne K. Brysting,  Loren Rieseberg,  Tanja Slotte,  Christian Parisod,  Martin A. Lysak,  Christian Brochmann, 
  • Pages: 661-676
  • First Published: 15 October 2020

see also the Perspective by Tanja Pyhäjärvi and Tiina M. Mattila

RESOURCE ARTICLES

Molecular and Statistical Advances

Full Access

Biased assessment of ongoing admixture using STRUCTURE in the absence of reference samples

Sara Ravagni,  Ines Sanchez-Donoso,  Carles Vilà, 
  • Pages: 677-689
  • First Published: 21 October 2020
Open Access

Genome-scale target capture of mitochondrial and nuclear environmental DNA from water samples

Mads Reinholdt Jensen,  Eva Egelyng Sigsgaard,  Shenglin Liu,  Andrea Manica,  Steffen Sanvig Bach,  Michael Møller Hansen,  Peter Rask Møller,  Philip Francis Thomsen, 
  • Pages: 690-702
  • First Published: 11 November 2020
Full Access

MAUI-seq: Metabarcoding using amplicons with unique molecular identifiers to improve error correction

Bryden Fields,  Sara Moeskjær,  Ville-Petri Friman,  Stig U. Andersen,  J. Peter W. Young, 
  • Pages: 703-720
  • First Published: 10 November 2020
Full Access

Characterization of reproductive gene diversity in the endangered Tasmanian devil

Parice A. Brandies,  Belinda R. Wright,  Carolyn J. Hogg,  Catherine E. Grueber,  Katherine Belov, 
  • Pages: 721-732
  • First Published: 14 November 2020
Full Access

A comprehensive analysis comparing linear and generalized linear models in detecting adaptive SNPs

Lan Luo,  Zheng-zheng Tang,  Sean D. Schoville,  Jun Zhu, 
  • Pages: 733-744
  • First Published: 20 November 2020
Full Access

Maximizing the acquisition of unique reads in noninvasive capture sequencing experiments

Claudia Fontsere,  Marina Alvarez-Estape,  Jack Lester,  Mimi Arandjelovic,  Martin Kuhlwilm,  Paula Dieguez,  Anthony Agbor,  Samuel Angedakin,  Emmanuel Ayuk Ayimisin,  Mattia Bessone,  Gregory Brazzola,  Tobias Deschner,  Manasseh Eno-Nku,  Anne-Céline Granjon,  Josephine Head,  Parag Kadam,  Ammie K. Kalan,  Mohamed Kambi,  Kevin Langergraber,  Juan Lapuente,  Giovanna Maretti,  Lucy Jayne Ormsby,  Alex Piel,  Martha M. Robbins,  Fiona Stewart,  Virginie Vergnes,  Roman M. Wittig,  Hjalmar S. Kühl,  Tomas Marques-Bonet,  David A. Hughes,  Esther Lizano, 
  • Pages: 745-761
  • First Published: 20 November 2020
Full Access

Microbial networks inferred from environmental DNA data for biomonitoring ecosystem change: Strengths and pitfalls

Didac Barroso-Bergadà,  Charlie Pauvert,  Jessica Vallance,  Laurent Delière,  David A. Bohan,  Marc Buée,  Corinne Vacher, 
  • Pages: 762-780
  • First Published: 27 November 2020
Full Access

Identification of determinants of pollen donor fecundity using the hierarchical neighborhood model

Igor J. Chybicki,  Andrzej Oleksa,  Monika Dering, 
  • Pages: 781-800
  • First Published: 08 December 2020
Open Access

Hybridization capture of larch (Larix Mill.) chloroplast genomes from sedimentary ancient DNA reveals past changes of Siberian forest

Luise Schulte,  Nadine Bernhardt,  Kathleen Stoof-Leichsenring,  Heike H. Zimmermann,  Luidmila A. Pestryakova,  Laura S. Epp,  Ulrike Herzschuh, 
  • Pages: 801-815
  • First Published: 15 December 2020

Permanent Genetic Resources

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Exon probe sets and bioinformatics pipelines for all levels of fish phylogenomics

Lily C. Hughes,  Guillermo Ortí,  Hadeel Saad,  Chenhong Li,  William T. White,  Carole C. Baldwin,  Keith A. Crandall,  Dahiana Arcila,  Ricardo Betancur-R, 
  • Pages: 816-833
  • First Published: 21 October 2020
Full Access

Chromosome-level genome of the peach fruit moth Carposina sasakii (Lepidoptera: Carposinidae) provides a resource for evolutionary studies on moths

Li-Jun Cao,  Wei Song,  Lei Yue,  Shao-Kun Guo,  Jin-Cui Chen,  Ya-Jun Gong,  Ary Anthony Hoffmann,  Shu-Jun Wei, 
  • Pages: 834-848
  • First Published: 23 October 2020
Full Access

Canonical correlations reveal adaptive loci and phenotypic responses to climate in perennial ryegrass

José Luis Blanco-Pastor,  Philippe Barre,  Thomas Keep,  Thomas Ledauphin,  Abraham Escobar-Gutiérrez,  Anna Maria Roschanski,  Evelyn Willner,  Klaus J. Dehmer,  Matthew Hegarty,  Hilde Muylle,  Elisabeth Veeckman,  Klaas Vandepoele,  Tom Ruttink,  Isabel Roldán-Ruiz,  Stéphanie Manel,  Jean-Paul Sampoux, 
  • Pages: 849-870
  • First Published: 23 October 2020
Full Access

The chromosome-level genome sequence and karyotypic evolution of Megadenia pygmaea (Brassicaceae)

Wenjie Yang,  Lei Zhang,  Terezie Mandáková,  Li Huang,  Ting Li,  Jiebei Jiang,  Yongzhi Yang,  Martin A. Lysak,  Jianquan Liu,  Quanjun Hu, 
  • Pages: 871-879
  • First Published: 05 November 2020
Open Access

Development of a highly efficient 50K single nucleotide polymorphism genotyping array for the large and complex genome of Norway spruce (Picea abies L. Karst) by whole genome resequencing and its transferability to other spruce species

Carolina Bernhardsson,  Yanjun Zan,  Zhiqiang Chen,  Pär K. Ingvarsson,  Harry X. Wu, 
  • Pages: 880-896
  • First Published: 11 November 2020
Full Access

Chromosome level assembly reveals a unique immune gene organization and signatures of evolution in the common pheasant

Chuan He,  Lele Zhao,  Lu Xiao,  Ke Xu,  Jinmei Ding,  Hao Zhou,  Yuming Zheng,  Chengxiao Han,  Fisayo Akinyemi,  Huaixi Luo,  Lingyu Yang,  Lingxiao Luo,  Hongyan Yuan,  Xuelin Lu,  He Meng, 
  • Pages: 897-911
  • First Published: 14 November 2020
Full Access

Whole genome sequencing of silver carp (Hypophthalmichthys molitrix) and bighead carp (Hypophthalmichthys nobilis) provide novel insights into their evolution and speciation

Jianbo Jian,  Liandong Yang,  Xiaoni Gan,  Bin Wu,  Li Gao,  Honghui Zeng,  Xuzhen Wang,  Zhiqiang Liang,  Ying Wang,  Lihua Fang,  Jie Li,  Sanjie Jiang,  Kang Du,  Beide Fu,  Mingzhou Bai,  Ming Chen,  Xiaodong Fang,  Huanzhang Liu,  Shunping He, 
  • Pages: 912-923
  • First Published: 15 November 2020
Full Access

SCycDB: A curated functional gene database for metagenomic profiling of sulphur cycling pathways

Xiaoli Yu,  Jiayin Zhou,  Wen Song,  Mengzhao Xu,  Qiang He,  Yisheng Peng,  Yun Tian,  Cheng Wang,  Longfei Shu,  Shanquan Wang,  Qingyun Yan,  Jihua Liu,  Qichao Tu,  Zhili He, 
  • Pages: 924-940
  • First Published: 07 December 2020
Open Access

Chromosome-level genome assembly of the aphid parasitoid Aphidius gifuensis using Oxford Nanopore sequencing and Hi-C technology

Bingyan Li,  Zhenyong Du,  Li Tian,  Limeng Zhang,  Zhihua Huang,  Shujun Wei,  Fan Song,  Wanzhi Cai,  Yanbi Yu,  Hailin Yang,  Hu Li, 
  • Pages: 941-954
  • First Published: 13 December 2020
Full Access

Chromosome-level reference genome assembly provides insights into aroma biosynthesis in passion fruit (Passiflora edulis)

Dongna Ma,  Shanshan Dong,  Shengcheng Zhang,  Xiuqing Wei,  Qingjun Xie,  Qiansu Ding,  Rui Xia,  Xingtan Zhang, 
  • Pages: 955-968
  • First Published: 16 December 2020

Computer Program

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RepeatProfiler: A pipeline for visualization and comparative analysis of repetitive DNA profiles

Sherif Negm,  Anya Greenberg,  Amanda M. Larracuente,  John S. Sproul, 
  • Pages: 969-981
  • First Published: 04 December 2020
Open Access

A novel workflow to improve genotyping of multigene families in wildlife species: An experimental set-up with a known model system

Mark A. F. Gillingham,  B. Karina Montero,  Kerstin Wihelm,  Kara Grudzus,  Simone Sommer,  Pablo S. C. Santos, 
  • Pages: 982-998
  • First Published: 28 October 2020

CORRIGENDUM

Free Access

Corrigendum

  • Page: 999
  • First Published: 11 March 2021

Free Access

Corrigendum

  • Page: 1000
  • First Published: 17 January 2021