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IssueProteins: Structure, Function, and Bioinformatics: Volume 79, Issue 7
2021-2363July 2011
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Perspectives
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Early days of protein hydrogen exchange: 1954–1972†
- Pages: 2021-2026
- First Published: 22 March 2011
Short Communications
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Statistical analysis of protein structures suggests that buried ionizable residues in proteins are hydrogen bonded or form salt bridges
- Pages: 2027-2032
- First Published: 29 April 2011
Research Articles
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Structural modeling and molecular dynamics simulation of the actin filament
- Pages: 2033-2043
- First Published: 01 March 2011
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A parameterized, continuum electrostatic model for predicting protein pKa values
- Pages: 2044-2052
- First Published: 01 March 2011
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Improving taxonomy-based protein fold recognition by using global and local features
- Pages: 2053-2064
- First Published: 21 March 2011
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Crystal structure of sulfolobus tokodaii sua5 complexed with L-threonine and AMPPNP
- Pages: 2065-2075
- First Published: 21 March 2011
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Distinguishing two groups of flavin reductases by analyzing the protonation state of an active site carboxylic acid
- Pages: 2076-2085
- First Published: 21 March 2011
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Analysis of protein function and its prediction from amino acid sequence
- Pages: 2086-2096
- First Published: 21 March 2011
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Conformational dynamics of L-lysine, L-arginine, L-ornithine binding protein reveals ligand-dependent plasticity
- Pages: 2097-2108
- First Published: 21 March 2011
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Analysis of water patterns in protein kinase binding sites
- Pages: 2109-2121
- First Published: 22 March 2011
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Structural memory of natively unfolded tau protein detected by small-angle X-ray scattering
- Pages: 2122-2131
- First Published: 22 March 2011
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Computer simulation study of amyloid fibril formation by palindromic sequences in prion peptides
- Pages: 2132-2145
- First Published: 22 March 2011
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Crystal structure of a metal-dependent phosphoesterase (YP_910028.1) from Bifidobacterium adolescentis: Computational prediction and experimental validation of phosphoesterase activity
- Pages: 2146-2160
- First Published: 22 March 2011
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Free-energy function for discriminating the native fold of a protein from misfolded decoys
- Pages: 2161-2171
- First Published: 22 March 2011
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Quaternion-based definition of protein secondary structure straightness and its relationship to Ramachandran angles
- Pages: 2172-2180
- First Published: 22 March 2011
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Structural characterization of the mitomycin 7-O-methyltransferase
- Pages: 2181-2188
- First Published: 22 March 2011
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Toward the quantum chemical calculation of nuclear magnetic resonance chemical shifts of proteins
- Pages: 2189-2202
- First Published: 22 March 2011
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Leukocyte integrin αLβ2 transmembrane association dynamics revealed by coarse-grained molecular dynamics simulations
- Pages: 2203-2213
- First Published: 25 March 2011
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Observing the osmophobic effect in action at the single molecule level
- Pages: 2214-2223
- First Published: 25 March 2011
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Tat peptide-calmodulin binding studies and bioinformatics of HIV-1 protein–calmodulin interactions
- Pages: 2233-2246
- First Published: 01 April 2011
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The role of tyrosine 71 in modulating the flap conformations of BACE1
- Pages: 2247-2259
- First Published: 05 April 2011
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Protein loop selection using orientation-dependent force fields derived by parameter optimization
- Pages: 2260-2267
- First Published: 07 April 2011
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Fast approximations of the rotational diffusion tensor and their application to structural assembly of molecular complexes
- Pages: 2268-2281
- First Published: 12 April 2011
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Binding to the open conformation of HIV-1 protease
- Pages: 2282-2290
- First Published: 14 April 2011
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Coarse-grained modeling of conformational transitions underlying the processive stepping of myosin V dimer along filamentous actin
- Pages: 2291-2305
- First Published: 14 April 2011
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In silico predictions of LH2 ring sizes from the crystal structure of a single subunit using molecular dynamics simulations
- Pages: 2306-2315
- First Published: 20 April 2011
Structure Notes
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Solution structure of the protein lipocalin 12 from rat epididymis
- Pages: 2316-2320
- First Published: 21 March 2011
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Crystal structure of the catalytic domain of cholesterol-α-glucosyltransferase from Helicobacter pylori
- Pages: 2321-2326
- First Published: 22 March 2011
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The ygeW encoded protein from Escherichia coli is a knotted ancestral catabolic transcarbamylase
- Pages: 2327-2334
- First Published: 25 March 2011
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Crystal structure of Bacteroides thetaiotaomicron TetX2: A tetracycline degrading monooxygenase at 2.8 Å resolution
- Pages: 2335-2340
- First Published: 12 April 2011
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The PR/SET domain in PRDM4 is preceded by a zinc knuckle
- Pages: 2341-2345
- First Published: 20 April 2011
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Crystal structure of a novel dimer form of FlgD from P. aeruginosa PAO1
- Pages: 2346-2351
- First Published: 20 April 2011
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Crystallographic and microcalorimetric analyses reveal the structural basis for high arginine specificity in the Salmonella enterica serovar Typhimurium periplasmic binding protein STM4351†
- Pages: 2352-2357
- First Published: 20 April 2011
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Structural insights into the metal binding properties of hypothetical protein MJ0754 from Methanococcus jannaschii
- Pages: 2358-2363
- First Published: 29 April 2011