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Issue Information

  • Pages: 1-2
  • First Published: 17 December 2015
Free Access

Frontispiece

  • Pages: 3-4
  • First Published: 17 December 2015
Frontispiece

Collections-Based Research in the Genomic Era

Guest edited by Sven Buerki and William J. Baker

Cover image: Hygrocybe conica (BTM. Dentinger 522). Photo taken by Bryn T. M. Dentinger.

Frontispiece: Sabal mauritiiformis. Photo taken by William J. Baker.

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Collections-based research in the genomic era

Sven Buerki,  William J. Baker FLS, 
  • Pages: 5-10
  • First Published: 17 November 2015

Research Articles

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Tales from the crypt: genome mining from fungarium specimens improves resolution of the mushroom tree of life

Bryn T. M. Dentinger,  Ester Gaya,  Heath O'Brien,  Laura M. Suz,  Robert Lachlan,  Jorge R. Díaz-Valderrama,  Rachel A. Koch,  M. Catherine Aime, 
  • Pages: 11-32
  • First Published: 20 May 2015
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Herbarium genomics: plastome sequence assembly from a range of herbarium specimens using an Iterative Organelle Genome Assembly pipeline

Freek T. Bakker,  Di Lei,  Jiaying Yu,  Setareh Mohammadin,  Zhen Wei,  Sara van de Kerke,  Barbara Gravendeel,  Mathijs Nieuwenhuis,  Martijn Staats,  David E. Alquezar-Planas,  Rens Holmer, 
  • Pages: 33-43
  • First Published: 07 August 2015
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Museomics illuminate the history of an extinct, paleoendemic plant lineage (Hesperelaea, Oleaceae) known from an 1875 collection from Guadalupe Island, Mexico

Loubab Zedane,  Cynthia Hong-Wa,  Jérôme Murienne,  Céline Jeziorski,  Bruce G. Baldwin,  Guillaume Besnard, 
  • Pages: 44-57
  • First Published: 09 April 2015
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The use of museum samples for large-scale sequence capture: a study of congeneric horseshoe bats (family Rhinolophidae)

Sebastian E. Bailey,  Xiuguang Mao,  Monika Struebig,  Georgia Tsagkogeorga,  Gabor Csorba,  Lawrence R. Heaney,  Jodi Sedlock,  William Stanley,  Jean-Marie Rouillard,  Stephen J. Rossiter, 
  • Pages: 58-70
  • First Published: 03 August 2015
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Valuing museum specimens: high-throughput DNA sequencing on historical collections of New Guinea crowned pigeons (Goura)

Guillaume Besnard,  Joris A. M. Bertrand,  Boris Delahaie,  Yann X. C. Bourgeois,  Emeline Lhuillier,  Christophe Thébaud, 
  • Pages: 71-82
  • First Published: 30 March 2015
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Rapid assembly of taxonomically validated mitochondrial genomes from historical insect collections

Martijn J. T. N. Timmermans,  Carl Viberg,  Geoff Martin,  Kevin Hopkins,  Alfried P. Vogler, 
  • Pages: 83-95
  • First Published: 20 May 2015
Open Access

Using genomic repeats for phylogenomics: a case study in wild tomatoes (Solanum section Lycopersicon: Solanaceae)

Steven Dodsworth,  Mark W. Chase,  Tiina Särkinen,  Sandra Knapp,  Andrew R. Leitch, 
  • Pages: 96-105
  • First Published: 17 July 2015
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Phylogenomic analyses of species relationships in the genus Sabal (Arecaceae) using targeted sequence capture

Karolina Heyduk,  Dorset W. Trapnell,  Craig F. Barrett,  Jim Leebens-Mack, 
  • Pages: 106-120
  • First Published: 13 May 2015
Open Access

First steps in studying the origins of secondary woodiness in Begonia (Begoniaceae): combining anatomy, phylogenetics, and stem transcriptomics

Catherine Kidner,  Andrew Groover,  Daniel C. Thomas,  Katie Emelianova,  Claudia Soliz-Gamboa,  Frederic Lens, 
  • Pages: 121-138
  • First Published: 30 March 2015
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Improving the estimation of genetic distances from Next-Generation Sequencing data

Filipe G. Vieira,  Florent Lassalle,  Thorfinn S. Korneliussen,  Matteo Fumagalli, 
  • Pages: 139-149
  • First Published: 30 March 2015

Review Article

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Ancient DNA: the next generation – chapter and verse

Anna Linderholm, 
  • Pages: 150-160
  • First Published: 17 July 2015