Advances in Salmonid Genetics

Special Issues
5 July 2024
7 August 2024
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Introductory Article to Special Issue

Open Access

Advances in salmonid genetics—Insights from Coastwide and beyond

Shawn R. Narum,  Matthew Campbell,  Katharine Coykendall,  Mariah Meek,  Kathleen G. O'Malley,  Maren Wellenreuther, 

Mixed stock analyses and parentage-based tagging

Open Access

Efficient population representation with more genetic markers increases performance of a steelhead (Oncorhynchus mykiss) genetic stock identification baseline

John S. Hargrove,  Thomas A. Delomas,  John H. Powell,  Jon E. Hess,  Shawn R. Narum,  Matthew R. Campbell, 
Open Access

Harnessing the power of regional baselines for broad-scale genetic stock identification: A multistage, integrated, and cost-effective approach

Bobby Hsu,  Christopher Habicht, 
Open Access

Visual and genetic stock identification of a test fishery to forecast Columbia River spring Chinook salmon stocks 2 weeks into the future

Jon E. Hess,  Bethany M. Deacy,  Michelle W. Rub,  Donald M. Van Doornik,  John M. Whiteaker,  Jeffrey K. Fryer,  Shawn R. Narum, 
Open Access

Reliability of trans-generational genetic mark–recapture (tGMR) for enumerating Pacific salmon

Samuel W. Rosenbaum,  Samuel A. May,  Kyle R. Shedd,  Curry J. Cunningham,  Randy L. Peterson,  Brian W. Elliot,  Megan V. McPhee, 
Open Access

Efficient species identification for Pacific salmon genetic monitoring programs

Zachary L. Robinson,  Jeff Stephenson,  Kim Vertacnik,  Stuart Willis,  Rebekah Horn,  Jesse McCane,  D. Katharine Coykendall,  Shawn R. Narum, 
Open Access

Genetic parentage reveals the (un)natural history of Central Valley hatchery steelhead

Laura C. Goetz,  Hayley Nuetzel,  David L. J. Vendrami,  Anne K. Beulke,  Eric C. Anderson,  John Carlos Garza,  Devon E. Pearse, 
Open Access

Utility of parentage-based tagging for monitoring Coho salmon (Oncorhynchus kisutch) in the interior Columbia River basin

Rebekah L. Horn,  Hayley M. Nuetzel,  Becky Johnson,  Cory Kamphaus,  Jon Lovrak,  Kraig Mott,  Todd Newsome,  Shawn R. Narum, 

Conservation of life history variation & genetic diversity

Open Access

Hatchery supplementation provides a demographic boost but alters age composition of sockeye salmon in Auke Lake, Southeast Alaska

Megan V. McPhee,  Patrick D. Barry,  Chris Habicht,  Scott C. Vulstek,  Joshua R. Russell,  William W. Smoker,  John E. Joyce,  Anthony J. Gharrett, 
Open Access

Local environments, not invasive hybridization, influence cardiac performance of native trout under acute thermal stress

Jeffrey T. Strait,  Jared A. Grummer,  Nicholas F. Hoffman,  Clint C. Muhlfeld,  Shawn R. Narum,  Gordon Luikart, 
Open Access

Genetic consequences of improved river connectivity in brown trout (Salmo trutta L.)

Paolo Moccetti,  Jamie R. Dodd,  Domino A. Joyce,  Andy D. Nunn,  Ben Gillespie,  Jonathan D. Bolland, 
Open Access

Population genomics, life-history tactics, and mixed-stock subsistence fisheries in the northernmost American Atlantic salmon populations

Alexandre Carbonneau,  Julien April,  Eric Normandeau,  Anne-Laure Ferchaud,  Véronique Nadeau,  Louis Bernatchez, 
Open Access

Remnant salmon life history diversity rediscovered in a highly compressed habitat

Sara A. Hugentobler,  Anna M. Sturrock,  Malte Willmes,  Tasha Q. Thompson,  Rachel C. Johnson,  Flora Cordoleani,  Natalie J. Stauffer-Olsen,  George Whitman,  Mariah H. Meek, 
Open Access

Temporal allele frequency changes in large-effect loci reveal potential fishing impacts on salmon life-history diversity

Antti Miettinen,  Atso Romakkaniemi,  Johan Dannewitz,  Tapani Pakarinen,  Stefan Palm,  Lo Persson,  Johan Östergren,  Craig R. Primmer,  Victoria L. Pritchard, 
Open Access

A single generation in the wild increases fitness for descendants of hatchery-origin Chinook salmon (Oncorhynchus tshawytscha)

David I. Dayan,  Nicholas M. Sard,  Marc A. Johnson,  Cristín K. Fitzpatrick,  Ryan Couture,  Kathleen G. O'Malley, 
Open Access

Using de novo transcriptomes to decipher the relationships in cutthroat trout subspecies (Oncorhynchus clarkii)

Andrea L. Kokkonen,  Peter C. Searle,  Dennis K. Shiozawa,  R. Paul Evans, 
Open Access

Genomics and 20 years of sampling reveal phenotypic differences between subpopulations of outmigrating Central Valley Chinook salmon

Tasha Q. Thompson,  Shannon O'Leary,  Sean O'Rourke,  Charlene Tarsa,  Melinda R. Baerwald,  Pascale Goertler,  Mariah H. Meek, 

Adaptive variation from whole genome resequencing

Open Access

Genomic vulnerability of a freshwater salmonid under climate change

Anna Tigano,  Tyler Weir,  Hillary G. M. Ward,  Marika Kirstin Gale,  Carmen M. Wong,  Erika J. Eliason,  Kristina M. Miller,  Scott G. Hinch,  Michael A. Russello, 
Open Access

Ecological disturbance reduces genomic diversity across an Alpine whitefish adaptive radiation

David Frei,  Salome Mwaiko,  Ole Seehausen,  Philine G. D. Feulner, 
Open Access

Genetic variation associated with adult migration timing in lineages of Steelhead and Chinook Salmon in the Columbia River

Shawn R. Narum,  Rebekah Horn,  Stuart Willis,  Ilana Koch,  Jon Hess,