High resolution melting analysis for detection of BRAF exon 15 mutations in hairy cell leukaemia and other lymphoid malignancies
Elaine M. Boyd
Department of Haematology, Haemato-Oncology Diagnostic Service, Addenbrooke’s Hospital
Search for more papers by this authorAnthony J. Bench
Department of Haematology, Haemato-Oncology Diagnostic Service, Addenbrooke’s Hospital
Search for more papers by this authorMars B. van ‘t Veer
Department of Haematology, Haemato-Oncology Diagnostic Service, Addenbrooke’s Hospital
Search for more papers by this authorPenny Wright
Department of Histopathology, Addenbrooke’s Hospital, Cambridge, UK
Search for more papers by this authorDavid M. Bloxham
Department of Haematology, Haemato-Oncology Diagnostic Service, Addenbrooke’s Hospital
Search for more papers by this authorGeorge A. Follows
Department of Haematology, Haemato-Oncology Diagnostic Service, Addenbrooke’s Hospital
Search for more papers by this authorMike A. Scott
Department of Haematology, Haemato-Oncology Diagnostic Service, Addenbrooke’s Hospital
Search for more papers by this authorElaine M. Boyd
Department of Haematology, Haemato-Oncology Diagnostic Service, Addenbrooke’s Hospital
Search for more papers by this authorAnthony J. Bench
Department of Haematology, Haemato-Oncology Diagnostic Service, Addenbrooke’s Hospital
Search for more papers by this authorMars B. van ‘t Veer
Department of Haematology, Haemato-Oncology Diagnostic Service, Addenbrooke’s Hospital
Search for more papers by this authorPenny Wright
Department of Histopathology, Addenbrooke’s Hospital, Cambridge, UK
Search for more papers by this authorDavid M. Bloxham
Department of Haematology, Haemato-Oncology Diagnostic Service, Addenbrooke’s Hospital
Search for more papers by this authorGeorge A. Follows
Department of Haematology, Haemato-Oncology Diagnostic Service, Addenbrooke’s Hospital
Search for more papers by this authorMike A. Scott
Department of Haematology, Haemato-Oncology Diagnostic Service, Addenbrooke’s Hospital
Search for more papers by this authorSummary
The BRAF V600E mutation has recently been described in all cases of hairy cell leukaemia (HCL). We have developed and validated a rapid and sensitive high-resolution melting analysis (HRMA) assay that detects BRAF exon 15 mutations when hairy cells are as low as 5–10% in a sample. All 48 HCL patients were positive for the BRAF V600E mutation, while 114 non-HCL cases were all V600E negative. Interestingly, we detected a novel BRAF D594N mutation in one patient with multiple myeloma. The HRMA assay offers a useful tool to aid the laboratory diagnosis of HCL.
References
- Basso, K., Liso, A., Tiacci, E., Benedetti, R., Pulsoni, A., Foa, R., Di Raimondo, F., Ambrosetti, A., Califano, A., Klein, U., Dalla-Favera, R. & Falini, B. (2004) Gene expression profiling of hairy cell leukemia reveals a phenotype related to memory B cells with altered expression of chemokine and adhesion receptors. The Journal of Experimental Medicine, 199, 59–68.
- Boyd, E.M., Bench, A.J., Goday-Fernández, A., Anand, S., Vaghela, K.J., Scott, M.A., Bareford, D., Green, A.R., Huntly, B. & Erber, W.N. (2010) Clinical utility of routine MPL exon 10 analysis in the diagnosis of essential thrombocythemia and primary myelofibrosis. British Journal of Haematology, 149, 250–257.
- Chapman, M.A., Lawrence, M.S., Keats, J.J., Cibulskis, K., Sougnez, C., Schinzel, A.C., Harview, C.L., Brunet, J.P., Ahmann, G.J., Adli, M., Anderson, K.C., Ardlie, K.G., Auclair, D., Baker, A., Bergsagel, P.L., Bernstein, B.E., Drier, Y., Fonseca, R., Gabriel, S.B., Hofmeister, C.C., Jagannath, S., Jakubowiak, A.J., Krishnan, A., Levy, J., Liefeld, T., Lonial, S., Mahan, S., Mfuko, B., Monti, S., Perkins, L.M., Onofrio, R., Pugh, T.J., Rajkumar, S.V., Ramos, A.H., Siegel, D.S., Sivachenko, A., Stewart, A.K., Trudel, S., Vij, R., Voet, D., Winckler, W., Zimmerman, T., Carpten, J., Trent, J., Hahn, W.C., Garraway, L.A., Meyerson, M., Lander, E.S., Getz, G. & Golub, T.R. (2011) Initial genome sequencing and analysis of multiple myeloma. Nature, 24, 467–472.
- Gustafsson, B., Angelini, S., Sander, B., Christensson, B., Hemminki, K. & Kumar, R. (2005) Mutations in the BRAF and N-ras genes in childhood acute lymphoblastic leukaemia. Leukemia, 19, 310–312.
- Heidorn, S.J., Milagre, C., Whittaker, S., Nourry, A., Niculescu-Davus, I., Dhomen, N., Hussain, J., Reis-Filho, J.S., Springer, C.J., Pritchard, C. & Marais, R. (2010) Kinase-dead BRAF and oncogenic RAS cooperate to drive tumor progression through CRAF. Cell, 140, 209–221.
- James, C., Ugo, V., Le Couédic, J.P., Staerk, J., Delhommeau, F., Lacout, C., Garçon, L., Raslova, H., Berger, R., Bennaceur-Griscelli, A., Villeval, J.L., Constantinescu, S.N., Casadevall, N. & Vainchenker, W. (2005) A unique clonal JAK2 mutation leading to constitutive signalling causes polycythaemia vera. Nature, 434, 1144–1148.
- Kamata, T., Hussain, J., Giblett, S., Hayward, R., Marais, R. & Pritchard, C. (2010) BRAF inactivation drives aneuploidy by deregulating CRAF. Cancer Research, 70, 8475–8486.
- Lee, J.W., Yoo, N.J., Soung, Y.H., Kim, H.S., Park, W.S., Kim, S.Y., Lee, J.H., Park, J.Y., Cho, Y.G., Kim, C.J., Ko, Y.H., Kim, S.H., Nam, S.W., Lee, J.Y. & Lee, S.H. (2003) BRAF mutations in non-Hodgkin’s lymphoma. British Journal of Cancer, 89, 1958–1960.
- Pleasance, E.D., Stephens, P.J., O’Meara, S., McBride, D.J., Meynert, A., Jones, D., Lin, M.L., Beare, D., Lau, K.W., Greenman, C., Varela, I., Nik-Zainal, S., Davies, H.R., Ordoñez, G.R., Mudie, L.J., Latimer, C., Edkins, S., Stebbings, L., Chen, L., Jia, M., Leroy, C., Marshall, J., Menzies, A., Butler, A., Teague, J.W., Mangion, J., Sun, Y.A., McLaughlin, S.F., Peckham, H.E., Tsung, E.F., Costa, G.L., Lee, C.C., Minna, J.D., Gazdar, A., Birney, E., Rhodes, M.D., McKernan, K.J., Stratton, M.R., Futreal, P.A. & Campbell, P.J. (2010) A small-cell lung cancer genome with complex signatures of tobacco exposure. Nature, 463, 184–190.
- Rozen, S. & Skaletsky, H.J. (2000) Primer3 on the WWW for general users and for biologist programmers. In: Bioinformatics Methods and Protocols: Methods in Molecular Biology (eds by S. Krawetz & S. Misener), pp. 365–386. Humana Press, Totowa, NJ.
- S.H. Swerdlow, E. Campo, N.L. Harris, E.S. Jaffe, S.A. Pileri, H. Stein, J. Thiele & J.W. Vardiman (eds) (2008) WHO Classification of Tumours of Hematopoietic and Lymphoid Tissues, 4th edn. International Agency for Research on Cancer, Lyon.
- Tiacci, E., Trifonov, V., Schiavon, i.G., Holmes, A., Kern, W., Martelli, M.P., Pucciarini, A., Bigerna, B., Pacini, R., Wells, V.A., Sportoletti, P., Pettirossi, V., Mannucci, R., Elliott, O., Liso, A., Ambrosetti, A., Pulsoni, A., Forconi, F., Trentin, L., Semenzato, G., Inghirami, G., Capponi, M., Di Raimondo, F., Patti, C., Arcaini, L., Musto, P., Pileri, S., Haferlach, C., Schnittger, S., Pizzolo, G., Foà, R., Farinelli, L., Haferlach, T., Pasqualucci, L., Rabadan, R. & Falini, B. (2011) BRAF mutations in hairy-cell leukemia. New England Journal of Medicine, 364, 2305–2315.
- Wan, P.T., Garnett, M.J., Roe, S.M., Lee, S., Niculescu-Duvaz, D., Good, V.M., Jones, C.M., Marshall, C.J., Springer, C.J., Barford, D., Marais, R. & Cancer Genome Project. (2004) Mechanism of activation of the RAF-ERK signaling pathway by oncogenic mutations of B-RAF. Cell, 116, 855–867.
- Zhang, X., Reis, M., Khoriaty, R., Li, Y., Ouillette, P., Samayoa, J., Carter, H., Karchin, R., Li, M., Diaz, Jr, L.A., Velculescu, V.E., Papadopoulos, N., Kinzler, K.W., Vogelstein, B. & Malek, S.N. (2011) Sequence analysis of 515 kinase genes in chronic lymphocytic leukemia. Leukemia, epub ahead of print doi: 10.1038/leu.2011.163.