Synonymous nucleotide polymorphisms influence Dombrock blood group protein expression in K562 cells
Cécile Durousseau de Coulgeans
Établissement Français du Sang Alpes Méditerranée, Marseille, France
EFS, ADÉS UMR 7268, Aix Marseille Université, Marseille, France
Search for more papers by this authorMonique Silvy
Établissement Français du Sang Alpes Méditerranée, Marseille, France
EFS, ADÉS UMR 7268, Aix Marseille Université, Marseille, France
Search for more papers by this authorGregory Halverson
Laboratory of Immunochemistry, New York Blood Center, New York, NY, USA
Search for more papers by this authorJacques Chiaroni
Établissement Français du Sang Alpes Méditerranée, Marseille, France
EFS, ADÉS UMR 7268, Aix Marseille Université, Marseille, France
Search for more papers by this authorPascal Bailly
Établissement Français du Sang Alpes Méditerranée, Marseille, France
EFS, ADÉS UMR 7268, Aix Marseille Université, Marseille, France
Search for more papers by this authorCorresponding Author
Sylvie Chapel-Fernandes
Établissement Français du Sang Alpes Méditerranée, Marseille, France
EFS, ADÉS UMR 7268, Aix Marseille Université, Marseille, France
Correspondence: Sylvie Chapel-Fernandes, EFS Alpes Méditerranée, Laboratoire d'Hématologie Moléculaire, CNRS UMR 7268, Aix Marseille Université, 207 Boulevard Sainte Marguerite, 13009 Marseille, France.
E-mail: [email protected]
Search for more papers by this authorCécile Durousseau de Coulgeans
Établissement Français du Sang Alpes Méditerranée, Marseille, France
EFS, ADÉS UMR 7268, Aix Marseille Université, Marseille, France
Search for more papers by this authorMonique Silvy
Établissement Français du Sang Alpes Méditerranée, Marseille, France
EFS, ADÉS UMR 7268, Aix Marseille Université, Marseille, France
Search for more papers by this authorGregory Halverson
Laboratory of Immunochemistry, New York Blood Center, New York, NY, USA
Search for more papers by this authorJacques Chiaroni
Établissement Français du Sang Alpes Méditerranée, Marseille, France
EFS, ADÉS UMR 7268, Aix Marseille Université, Marseille, France
Search for more papers by this authorPascal Bailly
Établissement Français du Sang Alpes Méditerranée, Marseille, France
EFS, ADÉS UMR 7268, Aix Marseille Université, Marseille, France
Search for more papers by this authorCorresponding Author
Sylvie Chapel-Fernandes
Établissement Français du Sang Alpes Méditerranée, Marseille, France
EFS, ADÉS UMR 7268, Aix Marseille Université, Marseille, France
Correspondence: Sylvie Chapel-Fernandes, EFS Alpes Méditerranée, Laboratoire d'Hématologie Moléculaire, CNRS UMR 7268, Aix Marseille Université, 207 Boulevard Sainte Marguerite, 13009 Marseille, France.
E-mail: [email protected]
Search for more papers by this authorSummary
To gain further insight into ART4 (DO) gene alleles (DO*A, DO*JO1, DO*A-WL, DO*DOYA, DO*B, DO*B-WL, DO*B-SH-Q149K, DO*B-(WL)-I175N, DO*HY1, DO*HY2, DO*DOMR) and evaluate the impact of synonymous nucleotide polymorphisms on protein expression and mRNA accumulation of DO*A-HA, DO*A-SH and DO*B-SH alleles, human erythroleukaemic K562 cells were transducted with variant DO-lentiviral particles and analysed by flow cytometry and quantitative reverse transcription polymerase chain reaction. Monoclonal antibody (MoAb) detection of DO*A-HA and DO*JO1 transductants was lower than DO*A transductants, while detection of DO*A-SH, DO*A-WL and DO*DOYA transductants was higher. Variant DO*B alleles, i.e. DO*B-SH, DO*B-WL, DO*HY1, DO*HY2 and DO*DOMR, showed reduced MoAb binding. The unexpected modifications of protein expression of the DO*A-HA, DO*A-SH and DO*B-SH alleles that differ from the DO*A or DO*B alleles by a single synonymous polymorphism were abolished by reversion, thus implying involvement of these polymorphisms. Depending on the Leu208 codon used, detection level ranged from 1 to 4·14. In the variant alleles resulting from single synonymous polymorphism, mRNA accumulation correlated roughly with MoAbs detection levels, suggesting post-transcriptional regulation. Other than a few reports involving aberrant splicing, the experiments described herein provide the first evidence that synonymous nucleotide polymorphisms can influence Dombrock blood group expression. Such polymorphisms should be taken into account for molecular screening and potential impact on transfusion.
Supporting Information
Filename | Description |
---|---|
bjh12597-sup-0001-TabS1.docxWord document, 12.7 KB | Table S1. Flow cytometry data of K562 transductants expressing variant DO alleles. |
Please note: The publisher is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.
References
- Baleotti, W.J., Rios, M., Reid, M.E., Hashmi, G., Fabron, A.J., Pellegrino, J.J. & Castilho, L. (2006) Dombrock gene analysis in Brazilian people reveals novel alleles. Vox Sanguinis, 91, 81–87.
- Baleotti, W., Suzuki, R.B., Ruiz, M., Fabron, A. & Castilho, L. (2011a) Analysis of DO variants expression by analysis of transcriptions levels of DO mRNA. Transfusion, SP287, 51, 151A.
- Baleotti, W.J., Suzuki, R.B., Polotto, M., Ruiz, M.O., Fabron, A.J. & Castilho, L. (2011b) A PCR-based strategy for Dombrock screening in Brazilian blood donors reveals a novel allele: the DO* A-WL. Journal of Clinical Laboratory Analysis, 25, 79–82.
- Banks, J.A., Hemming, N. & Poole, J. (1995) Evidence that the Gya, Hy and Joa antigens belong to the Dombrock blood group system. Vox Sanguinis, 68, 177–182.
- Barrett, V.J., O'Brien, M.M., Moulds, J.J., Spruell, P., Jackson, V. & Stubbs, J.R. (1996) Anti-Holley detected in a primary immune responses. Immunohematology, 12, 62–65.
- Baumgarten, R., van Gelder, W., van Wintershoven, J., Maaskant-Van Wijk, P.A. & Beckers, E.A. (2006) Recurrent acute hemolytic transfusion reactions by antibodies against Doa antigens, not detected by cross-matching. Transfusion, 46, 244–249.
- Chapel-Fernandes, S., Callebaut, I., Halverson, G.R., Reid, M.E., Bailly, P. & Chiaroni, J. (2009) Dombrock genotyping in a native Congolese cohort reveals two novel alleles. Transfusion, 49, 1661–1671.
- Claperon, A., Rose, C., Gane, P., Collec, E., Bertrand, O. & Ouimet, T. (2005) The Kell protein of the common K2 phenotype is a catalytically active metalloprotease, whereas the rare Kell K1 antigen is inactive. Identification of novel substrates for the Kell protein. Journal of Biological Chemistry, 280, 21272–21283.
- Costa, F.P., Hue-Roye, K., Sausais, L., Velliquette, R.W., Da Costa Ferreira, E., Lomas-Francis, C. & Reid, M.E. (2010) Absence of DOMR, a new antigen in the Dombrock blood group system that weakens expression of Do(b), Gy(a), Hy, Jo(a), and DOYA antigens. Transfusion, 50, 2026–2031.
- Crick, F.H. (1966) Codon–anticodon pairing: the wobble hypothesis. Journal of Molecular Biology, 19, 548–555.
- Diatchenko, L., Slade, G.D., Nackley, A.G., Bhalang, K., Sigurdsson, A., Belfer, I., Goldman, D., Xu, K., Shabalina, S.A., Shagin, D., Max, M.B., Makarov, S.S. & Maixner, W. (2005) Genetic basis for individual variations in pain perception and the development of a chronic pain condition. Human Molecular Genetics, 14, 135–143.
- Dittmar, K.A., Goodenbour, J.M. & Pan, T. (2006) Tissue-specific differences in human transfer RNA expression. PLoS Genetics, 2, e221.
- Dong, H., Nilsson, L. & Kurland, C.G. (1996) Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates. Journal of Molecular Biology, 260, 649–663.
- Gubin, A.N., Njoroge, J.M., Wojda, U., Pack, S.D., Rios, M., Reid, M.E. & Miller, J.L. (2000) Identification of the dombrock blood group glycoprotein as a polymorphic member of the ADP-ribosyltransferase gene family. Blood, 96, 2621–2627.
- Guthrie, C. & Abelson, J. (1982) The Molecular Biology of the Yeast Saccharomyces/ Metabolism and Gene Expression. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, 487–528.
- Halverson, G., Shanahan, E., Santiago, I., Mabile, R., Thurrell, T., Strupp, A.M., Wolf, C.F., Spruell, P. & Moulds, M.K. (1994) The first reported case of anti-Dob causing an acute hemolytic transfusion reaction. Vox Sanguinis, 66, 206–209.
- Hashmi, G., Shariff, T., Seul, M., Vissavajjhala, P., Hue-Roye, K., Charles-Pierre, D., Lomas-Francis, C., Chaudhuri, A. & Reid, M.E. (2005) A flexible array format for large-scale, rapid blood group DNA typing. Transfusion, 45, 680–688.
- Hult, A., Hellberg, A., Wester, E.S., Olausson, P., Storry, J.R. & Olsson, M.L. (2005) Blood group genotype analysis for the quality improvement of reagent test red blood cells. Vox Sanguinis, 88, 265–270.
- Ikemura, T. (1985) Codon usage and tRNA content in unicellular and multicellular organisms. Molecular Biology and Evolution, 2, 13–34.
- Johnston, J.C., Gasmi, M., Lim, L.E., Elder, J.H., Yee, J.K., Jolly, D.J., Campbell, K.P., Davidson, B.L. & Sauter, S.L. (1999) Minimum requirements for efficient transduction of dividing and nondividing cells by feline immunodeficiency virus vectors. Journal of Virology, 73, 4991–5000.
- Karamatic Crew, V., Poole, V., Marais, I., Needs, M., Wiles, D. & Daniels, D. (2011) DOLG, A novel high incidence antigen in the Dombrock blood group system. Vox Sanguinis, 101, 263.
- Kimchi-Sarfaty, C., Oh, J.M., Kim, I.W., Sauna, Z.E., Calcagno, A.M., Ambudkar, S.V. & Gottesman, M.M. (2007) A “silent” polymorphism in the MDR1 gene changes substrate specificity. Science, 315, 525–528.
- Koch-Nolte, F. & Haag, F. (1997) Mono(ADP-ribosyl)transferases and related enzymes in animal tissues. Emerging gene families. Advances in Experimental Medicine and Biology, 419, 1–13.
- Koch-Nolte, F., Haag, F., Braren, R., Kuhl, M., Hoovers, J., Balasubramanian, S., Bazan, F. & Thiele, H.G. (1997) Two novel human members of an emerging mammalian gene family related to mono-ADP-ribosylating bacterial toxins. Genomics, 39, 370–376.
- Komar, A.A. (2009) A pause for thought along the co-translational folding pathway. Trends in Biochemical Sciences, 34, 16–24.
- Komar, A.A., Lesnik, T. & Reiss, C. (1999) Synonymous codon substitutions affect ribosome traffic and protein folding during in vitro translation. FEBS Letters, 462, 387–391.
- Kudla, G., Murray, A.W., Tollervey, D. & Plotkin, J.B. (2009) Coding-sequence determinants of gene expression in Escherichia coli. Science, 324, 255–258.
- Lomas-Francis, C. & Reid, M.E. (2010) The Dombrock blood group system: a review. Immunohematology, 26, 71–78.
- Lucien, N., Celton, J.L., Le Pennec, P.Y., Cartron, J.P. & Bailly, P. (2002a) Short deletion within the blood group Dombrock locus causing a Do(null) phenotype. Blood, 100, 1063–1064.
- Lucien, N., Sidoux-Walter, F., Roudier, N., Ripoche, P., Huet, M., Trinh-Trang-Tan, M.M., Cartron, J.P. & Bailly, P. (2002b) Antigenic and functional properties of the human red blood cell urea transporter hUT-B1. Journal of Biological Chemistry, 277, 34101–34108.
- Mayer, B., Thornton, N., Yurek, S., Wylie, D., Hue-Roye, K., Poole, J., Bartolmas, T., Salama, A., Lomas-Francis, C., Velliquette, R.W., Yazdanbakhsh, K. & Reid, M.E. (2010) New antigen in the Dombrock blood group system, DOYA, ablates expression of Do(a) and weakens expression of Hy, Jo(a), and Gy(a) antigens. Transfusion, 50, 1295–1302.
- Mouro-Chanteloup, I., D'Ambrosio, A.M., Gane, P., Le Van Kim, C., Raynal, V., Dhermy, D., Cartron, J.P. & Colin, Y. (2002) Cell-surface expression of RhD blood group polypeptide is posttranscriptionally regulated by the RhAG glycoprotein. Blood, 100, 1038–1047.
- Naldini, L., Blomer, U., Gallay, P., Ory, D., Mulligan, R., Gage, F.H., Verma, I.M. & Trono, D. (1996) In vivo gene delivery and stable transduction of nondividing cells by a lentiviral vector. Science, 272, 263–267.
- Okazaki, I.J. & Moss, J. (1999) Characterization of glycosylphosphatidylinositiol-anchored, secreted, and intracellular vertebrate mono-ADP-ribosyltransferases. Annual Review of Nutrition, 19, 485–509.
- Parusel, I., Kahl, S., Braasch, F., Glowacki, G., Halverson, G.R., Reid, M.E., Schawalder, A., Ortolan, E., Funaro, A., Malavasi, F., Hardie, D., Halder, S., Buckley, C.D., Haag, F. & Koch-Nolte, F. (2005) A panel of monoclonal antibodies recognizing GPI-anchored ADP-ribosyltransferase ART4, the carrier of the Dombrock blood group antigens. Cellular Immunology, 236, 59–65.
- Reid, M.E., Hue-Roye, K., Charles-Pierre, D., Schawalder, A., Halverson, G.R., Poole, J., Warke, N., Castilho, L., Baleotti, W.J. & Lee, A. (2004) Production, characterization and testing of monoclonal anti-DOb. Transfusion, SP300, 44, 118A.
- Rios, M., Hue-Roye, K., Storry, J.R., Lee, T., Miller, J.L. & Reid, M.E. (2001) Molecular basis of the Dombrock null phenotype. Transfusion, 41, 1405–1407.
- Rios, M., Hue-Roye, K., Oyen, R., Miller, J. & Reid, M.E. (2002a) Insights into the Holley- and Joseph- phenotypes. Transfusion, 42, 52–58.
- Rios, M., Storry, J.R., Hue-Roye, K., Chung, A. & Reid, M.E. (2002b) Two new molecular bases for the Dombrock null phenotype. British Journal of Haematology, 117, 765–767.
- Rouas, R., Uch, R., Cleuter, Y., Jordier, F., Bagnis, C., Mannoni, P., Lewalle, P., Martiat, P. & Van den Broeke, A. (2002) Lentiviral-mediated gene delivery in human monocyte-derived dendritic cells: optimized design and procedures for highly efficient transduction compatible with clinical constraints. Cancer Gene Therapy, 9, 715–724.
- Roxby, D.J., Paris, J.M., Stern, D.A. & Young, S.G. (1994) Pure anti-Doa stimulated by pregnancy. Vox Sanguinis, 66, 49–50.
- Sauna, Z.E., Kimchi-Sarfaty, C., Ambudkar, S.V. & Gottesman, M.M. (2007) Silent polymorphisms speak: how they affect pharmacogenomics and the treatment of cancer. Cancer Research, 67, 9609–9612.
- Shah, P. & Gilchrist, M.A. (2010) Effect of correlated tRNA abundances on translation errors and evolution of codon usage bias. PLoS Genetics, 6, e1001128.
- Shirey, R.S., Boyd, J.S., King, K.E., Caturegli, P.P., Montgomery, W.M. Jr & Ness, P.M. (1998) Assessment of the clinical significance of anti-Dob. Transfusion, 38, 1026–1029.
- Spring, F.A. & Reid, M.E. (1991) Evidence that the human blood group antigens Gya and Hy are carried on a novel glycosylphosphatidylinositol-linked erythrocyte membrane glycoprotein. Vox Sanguinis, 60, 53–59.
- Spring, F.A., Reid, M.E. & Nicholson, G. (1994) Evidence for expression of the Joa blood group antigen on the Gya/Hy-active glycoprotein. Vox Sanguinis, 66, 72–77.
- Telen, M.J., Rosse, W.F., Parker, C.J., Moulds, M.K. & Moulds, J.J. (1990) Evidence that several high-frequency human blood group antigens reside on phosphatidylinositol-linked erythrocyte membrane proteins. Blood, 75, 1404–1407.
- Tournamille, C., Filipe, A., Wasniowska, K., Gane, P., Lisowska, E., Cartron, J.P., Colin, Y. & Le Van Kim, C. (2003) Structure-function analysis of the extracellular domains of the Duffy antigen/receptor for chemokines: characterization of antibody and chemokine binding sites. British Journal of Haematology, 122, 1014–1023.
- Westhoff, C., Vege, S., Yazdanbakhsh, K., Wylie, D., Razib, M., Hue-Roye, K., Halverson, G., Read, S., Whiteoak, E., Nickle, P., Maurer, J., Kavitsky, D., Nance, S. & Reid, M.E. (2007) A DOB allele encoding an amino acid substitution (Phe62Ser) resulting in a Dombrock null phenotype. Transfusion, 47, 1356–1362.
- Zhang, G., Hubalewska, M. & Ignatova, Z. (2009) Transient ribosomal attenuation coordinates protein synthesis and co-translational folding. Nature Structural & Molecular Biology, 16, 274–280.