Volume 70, Issue 3 pp. 1066-1070
Clinical Observations in Hepatology
Free Access

Expanding and Underscoring the Hepato-Encephalopathic Phenotype of QIL1/MIC13

Bianca E. Russell

Corresponding Author

Bianca E. Russell

Division of Human Genetics, Cincinnati Children's Hospital Medical Center, Cincinnati, OH

Address Correspondence and Reprint Requests to:

Bianca E. Russell, M.D.

Division of Genetics, Department of Pediatrics

University of California, Los Angeles

10833 Le Conte Ave, MDCC 12-334

Los Angeles, CA 90095

Phone: +1-310-206-6581

Email: [email protected]

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Kaitlin G. Whaley

Kaitlin G. Whaley

Division of Gastroenterology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH

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Kevin E. Bove

Kevin E. Bove

Department of Pathology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH

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Anatalia Labilloy

Anatalia Labilloy

Division of Human Genetics, Cincinnati Children's Hospital Medical Center, Cincinnati, OH

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Rachel C. Lombardo

Rachel C. Lombardo

Division of Human Genetics, Cincinnati Children's Hospital Medical Center, Cincinnati, OH

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Robert J. Hopkin

Robert J. Hopkin

Division of Human Genetics, Cincinnati Children's Hospital Medical Center, Cincinnati, OH

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Nancy D. Leslie

Nancy D. Leslie

Division of Human Genetics, Cincinnati Children's Hospital Medical Center, Cincinnati, OH

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Carlos Prada

Carlos Prada

Division of Human Genetics, Cincinnati Children's Hospital Medical Center, Cincinnati, OH

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Zahra Assouline

Zahra Assouline

Reference Center for Mitochondrial Diseases, Genetics Department, Institut Imagine, Necker Hospital, APHP, Paris, France

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Giulia Barcia

Giulia Barcia

Reference Center for Mitochondrial Diseases, Genetics Department, Institut Imagine, Necker Hospital, APHP, Paris, France

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Juliette Bouchereau

Juliette Bouchereau

Reference Center for Inherited Metabolic Diseases, Robert Debré Hospital, University Paris Diderot-Sorbonne Paris Cité, APHP, Paris, France

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Maryline Chomton

Maryline Chomton

Department of Pediatric Intensive Care, Robert-Debré Hospital, APHP, Paris, France

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Dominique Debray

Dominique Debray

Department of Pediatric Hepatology, Necker Hospital, APHP, Paris, France

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Imen Dorboz

Imen Dorboz

Robert-Debré Hospital, Inserm U1141, Paris, France

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Philippe Durand

Philippe Durand

Department of Pediatric Intensive Care, Bicêtre Hospital, APHP, Bicêtre, France

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Pauline Gaignard

Pauline Gaignard

Department of Pharmacy, Bicêtre Hospital, APHP, Bicêtre, France

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Dalila Habes

Dalila Habes

Department of Pediatric Hepatology, Bicêtre Hospital, APHP, Bicêtre, France

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Claude Jardel

Claude Jardel

Department of Biochemistry, Pitié-Salpétriêre Hospital, APHP, Paris, France

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François Labarthe

François Labarthe

Reference Center for Inborn Errors of Metabolism, Tours University Hospital, Tours, France

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Jonathan Lévy

Jonathan Lévy

Cytogenetics Department, Robert-Debré Hospital, APHP, Paris, France

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Anne Lombès

Anne Lombès

Institut Cochin, Inserm U1016, Paris, France

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Claire Mehler-Jacob

Claire Mehler-Jacob

Department of Pediatric Neurology, Bicêtre Hospital, APHP, Bicêtre, France

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Judith Melki

Judith Melki

Department of Genetics, Bicêtre Hospital, APHP, Bicêtre, France

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Laura Menvielle

Laura Menvielle

Department of Neonatology, Robert-Debré Hospital, APHP, Paris, France

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Arnold Munnich

Arnold Munnich

Reference Center for Mitochondrial Diseases, Genetics Department, Institut Imagine, Necker Hospital, APHP, Paris, France

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Charlotte Mussini

Charlotte Mussini

Department of Pathology, Bicêtre Hospital, APHP, Bicêtre, France

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Samia Pichard

Samia Pichard

Reference Center for Inherited Metabolic Diseases, Robert Debré Hospital, University Paris Diderot-Sorbonne Paris Cité, APHP, Paris, France

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Marlène Rio

Marlène Rio

Reference Center for Mitochondrial Diseases, Genetics Department, Institut Imagine, Necker Hospital, APHP, Paris, France

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Agnès Rötig

Agnès Rötig

Reference Center for Mitochondrial Diseases, Genetics Department, Institut Imagine, Necker Hospital, APHP, Paris, France

Institut Imagine, Inserm U1163, Paris, France

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Samira Sissaoui

Samira Sissaoui

Department of Pediatrics, Poitiers University Hospital, Poitiers, France

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Abdelhamid Slama

Abdelhamid Slama

Biochemistry Department, Bicêtre Hospital, APHP, Bicêtre, France

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Alexander G Miethke

Alexander G Miethke

Division of Gastroenterology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH

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Manuel Schiff

Manuel Schiff

Reference Center for Inherited Metabolic Diseases, Robert Debré Hospital, University Paris Diderot-Sorbonne Paris Cité, APHP, Paris, France

Inserm U1141, Paris, France

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First published: 26 March 2019
Citations: 21
Potential conflict of interest: Dr. Hopkin consults for, advises for, is on the speakers’ bureau for, and received grants from Sanofi Genzyme and Alexion. He consults for, advises for, and received grants from Amicus. He consults for and received grants from Shire. He consults for Sangamo. He received grants from Protalix and Idorsia. Dr. Miethke consults for Shire.
This work was supported by NIH grant T32 DK007727.

Abbreviations

  • 3MCGA
  • 3-methylglutaconic acid
  • ALF
  • acute liver failure
  • ARDS
  • acute respiratory distress syndrome
  • EM
  • electron microscopy
  • GGT
  • gamma-glutamyl transferase
  • Mitochondrial disease can present with rapid infantile liver failure. Two sibling pairs with variants in QIL1, a gene important for mitochondrial contact site and cristae organizing system (MICOS) function, were recently reported on. They had intermittent liver disease, mild cardiac hypertrophy, cerebellar atrophy, acquired microcephaly, neurological impairment, and death before age 5 (12 months to 5 years). Patients also had lactic acidosis and urinary excretion of 3-methylglutaconic acid (3MCGA).1, 2 An additional case had renal stones, liver failure, and progressive neurological decline with death at 22 months.3 We discuss 7 unreported patients.

    Clinical History

    Patients 1 and 2 were monozygotic twin sisters who presented with fulminant liver failure at 3 months (Table 1). Electron microscopy (EM) demonstrated unusual cristae configurations in hepatocytes and Kupffer cells, but subtle abnormalities in skeletal muscle mitochondria initially interpreted as normal (Fig. 1). Their mild neurological findings were attributed to liver disease, so they were listed for transplant but died of liver failure. A younger sister (patient 3) had elevated liver function studies at birth. At 9 months, her liver disease was stable. She died at 13 months. Patient 4 had neonatal onset of transient liver disease with death at 10 months from acute respiratory distress syndrome (ARDS). His older sister (patient 5) exhibited a similar course. Liver histology showed enlarged mitochondria (Fig. 1). A sister of the father (patient 6) had a similar course 24 years earlier. Patient 7 had neonatal onset of transient liver failure. She had bouts of liver disease with severe diarrhea and neurological deterioration and died at age 3 in the course of acute liver disease with vomiting and seizures.

    Table 1. Key Clinical Features of 7 Patients From Three Families With Variants in QIL1
    Patients Birth Parameters Presentation Laboratory Findings Medical Course
    1 (Family 1) Gestation: 34 weeks Month 2: elevated liver enzymes Month 2: ALT 131 (12-49 u/L); AST 227 (20-98 u/L); total Bili 4.2 (0.1-10.3 mg/dL); direct Bili 3.6 (0.0-0.4 mg/dL) Day 1: poor feeding; 17-day NICU stay
    Female Weight: 1,800 g Month 3: ALT 1,206; AST 2,153; ALP: 923 (81-316 u/L); GGT 88 (7-168 u/L); total Bili 12.4; ammonia <10 (<49 µmol/L); lactic acid: 2.7 (1.0-3.5 mmol/L); INR: 2.5; fibrinogen: 96 (200-400 mg/dL); factor V: 27.04 (50%-150%) Month 1: newborn screen with elevated tyrosine, repeat with methionine elevated
    Hispanic Monozygotic twins Urine 3MCGA Month 2: elevated liver enzymes without jaundice or coagulopathy
    d. 4 mo Month 3: Jaundice with worsening liver enzymes and coagulopathy developing into ALF; poor feeding; brain MRI with normal spectroscopy
    Genetic variant: c.260del (p.Gly87Alafs*3) Month 4: decompensated quickly in the OR with anesthesia and line placement; liver transplant aborted and returned intubated; died 10 days later at 4 months old with multiorgan failure
    2 (Family 1) Gestation: 34 weeks Month 2: elevated liver enzymes Month 2: ALT 229 (12-49 u/L); AST 296 (20-98 u/L); total Bili 3.3 (0.1-10.3 mg/dL); direct Bili: 2.7 (0.0-0.4 mg/dL) Day 1: poor feeding; 17-day NICU stay
    Female Weight: 1,990 g Month 3: ALT 829; AST 1,372; ALP 974 (81-316 u/L); GGT 80 (7-168 u/L); total Bili 7.5; ammonia <10 (<49 µmol/L); lactic acid 4.4 (1.0-3.5 mmol/L); INR: 2; fibrinogen 129 (200-400 mg/dL); factor V 30.02 (50%-150%) Month 1: newborn screen with elevated tyrosine, repeat with methionine elevated
    Hispanic Monozygotic twins Urine 3MCGA Month 2: elevated liver enzymes without jaundice or coagulopathy
    d. 4 mo Month 3: jaundice with worsening liver enzymes and coagulopathy developing into ALF; poor feeding; liver biopsy with subacute massive hepatic necrosis with collapse, prominent giant cell transformation of residual parenchyma with early micronodular cirrhosis; normal muscle and skin biopsy and brain MRI spectroscopy
    Genetic variant: c.260del (p.Gly87Alafs*3) Month 4: unlisted for liver transplant given biopsy and sister's clinical course; died at 4 months with worsening coagulopathy
    3 (Family 1) Gestation: 40 weeks Day 1: poor feeding, hypoglycemia, hypothermia; ALF with elevated liver enzymes on day 2 Day 2: low glucose 40 (47-110 mg/dL); ALT 85 (12-49 u/L); AST 332 (20-98 u/L); ALP 438 (81-316 u/L); GGT 598 (7-168 u/L); total Bili 10.7 (0.1-10.3 mg/dL); direct Bili 0.6 (0.0-0.4 mg/dL); ammonia 60 (<49 µmol/L); lactic acid 8.6 (1.0-3.5 mmol/L); PT 29.1 (9.6-11.6 seconds); INR 2.94; fibrinogen <70 (200-400 mg/dL); Factor V 22.57 (50%-150%) Day 1: poor feeding and hypoglycemia requiring gavage feeds and intravenous fluids
    Female Weight: 3,005 g Urine 3MCGA Day 2: elevated liver enzymes and coagulopathy with ALF
    Hispanic Length: 50.8 cm Week 1: brain MRI with subtle bilateral cerebral white matter signal abnormality and slight broadening/undersulcation of the frontal lobe gyri
    d. 13 mo APGAR: 9/10 Week 3: severe obstructive sleep apnea with associated hypoxemia and oxygen at night; coagulopathy normalized; home with palliative care avoidance of surgery or anesthesia
    Genetic variant: c.260del (p.Gly87Alafs*3) Month 9: all oral feeds, developmental delays
    Died at 13 months
    4 (Family 2) Gestation: 40 weeks Day 3: hypoglycemia, ALF Day 3: low glucose 29 (47-110 mg/dL); ALT 742 (5-110 u/L); AST 365 (5-55 u/L); ALP 653 (117-270 u/L); AFP 50,480 (150-15,000 ng/mL); GGT 445 (10-270 u/L); total Bili 18.5 (0.1-10.3 mg/dL); direct Bili 2.2 (0.0-0.4 mg/dL); ammonia 67 (<50 µmol/L); lactic acid 6 (1.5-2.0 mmol/L); PT ratio: 23% (70%-100%); factor V 27 (50-150%) Month 6: mild elevation of liver enzymes with normal coagulation profile, mild cholestasis, mild hypotonia; microcephaly (–2 SDs)
    Male Weight: 2,840 g Day 6: ALT 120; AST 76; ALP 802; GGT 276; total Bili 7.5; direct Bili 3.5; lactic acid 1.2; normal PT and factor V Month 9: respiratory insufficiency and ARDS
    Tunisian Length: 47 cm Month 9: ALT 52; AST 122; ALP 391; GGT 317; normal Bili, PT, and factor V Died at 10 months from ARDS
    d. 10 mo Urine 3MCGA
    Genetic variant: c.143dupT (p.Ala51Argfs*32)
    HC: 35 cm
    APGAR: 10/10
    5 (Family 2) Gestation: 40 weeks Month 1.5: cyanosis 1.5 mo: ALT 109 (5-110 u/L); AST 190 (5-55 u/L); ALP 630 (117-270 u/L); GGT 237 (10-270 u/L); normal total Bili; PT ratio 100% (70%-100%) Month 2: respiratory distress and hepatomegaly
    Female Weight: 2,820 g Month 2: ALT 152; AST 165; ALP 458; GGT 297; AFP 1,990 (150-15,000 ng/mL) Month 4: feeding difficulty with psychomotor regression and microcephaly (HC –2 SDs); breathing difficulties leading to ARDS
    Tunisian Length: 46.5 cm Month 4: ALT 147 IU/L; AST 78 IU/L; GGT 490 IU/L; ALP 433 IU/L; lactic acid 2-4 (1.5-2.0 mmol/L); no lactaturia; CSF lactate 2.2 (<2 mmol/L); PT ratio 100% Died at 5 months from ARDS
    d. 5 mo HC: 34 cm Urine 3MCGA
    Genetic variant: c.143dupT (p.Ala51Argfs*32) APGAR: 10/10
    6 (Family 2) Gestation: 39 weeks Month 8: psychomotor regression, microcephaly Month 8: ALT 537 (5-110 u/L); AST 418 (5-55 u/L); ALP 760 (117-270 u/L); total Bili 3.5 (0.1-10.3 mg/dL); direct Bili 1.8 (0.0-0.4 mg/dL); lactic acid 2 (1.5-2.0 mmol/L); CSF lactate 2.5 (<2 mmol/L); PT ratio 100% (70%-100%) Month 8: psychomotor regression, microcephaly at –2.5 SDs, optic atrophy, white matter changes, and cerebellar atrophy; muscle biopsy showed lipidosis, mitochondrial aggregates, and respiratory chain complexes (II + III) and intravenous deficiencies; in liver: deficiency of respiratory chain complexes (II + III)
    Female Weight: 3,270 g Urine 3MCGA Died at 9.5 months of age from respiratory distress
    Tunisian APGAR: 10/10
    d. 9.5 mo
    Genetic variant: c.143dupT (p.Ala51Argfs*32)
    7 (Family 3) Gestation: 41 weeks Day 1.5: liver failure, hypotonia Day 1.5: glucose very low; liver enzymes not done; AFP 20,000-50,000 (150-15,000 ng/mL); lactic acid 5 (1.5-2.0 mmol/L); PT ratio 29% (70%-100%); factor V 28% (50%-150%) Day 10: liver biopsy with multiple respiratory chain complexes deficiency and mtDNA depletion
    Female Weight: 3,440 g Day 10: ALT 30 (5-110 u/L); AST 88 (5-55 u/L); GGT 237 (10-270 u/L); ALP 392 (117-270 u/L); total Bili 4.6 (0-15 mg/dL); direct Bili 2.3 (0.0-0.7 mg/dL); lactic acid 5 mmol/L; ammonia 10 (<50 µmol/L); PT ratio 80%; factor V 183% Month 2: psychomotor delay with cerebellar and optic atrophy on brain MRI
    Tunisian Length: 52 cm 2 yo 10 mo: ALT 1,440; AST 999; GGT 85; PT ratio 50%; factor V 66%; no metabolic acidosis Intermittent liver failure when febrile
    d. 3 yo HC: 35 cm Urine 3MCGA 2 years 10 months: fever, vomiting, neurological deterioration, and associated seizures
    Genetic variant: c.143dupT (p.Ala51Argfs*32) APGAR: 10/10 Died at age 3 from severe neurological deterioration and liver disease
    • All families are of consanguinous descent. The proband in each familiy was identified on exome sequencing or mitochondrial nuclear gene panel by next-generation sequencing (patients 4-6) with Sanger confirmation for the proband and all affected relatives.
    • Abbreviations: AFP, alpha-fetoprotein; ALP, alkaline phosphatase; ALT, alanine aminotransferase; APGAR, Appearance, Pulse, Grimace, Activity, and Respiration; AST, aspartate aminotransferase; CSF, cerebrospinal fluid; d., died; direct Bili, direct bilirubin; HC, head circumference; INR, international normalized ratio; mo, months; MRI, magnetic resonance imaging; mtDNA, mitochondrial DNA; NICU, neonatal intensive care unit; OR, operating room; PT, prothrombin; total Bili, total bilirubin; yo, years old.
    Details are in the caption following the image
    Histopathology and ultrastructure of patients 2 and 5. Liver histology on patient 5 (A-D). (A) Liver parenchyma with irregular portal fibrosis and perisinusoidal fibrosis at 25×. (B) Abnormal hepatocytes with diffuse macro- and microvesicular steatosis at 200×. (C) Oxyphilic transformation at 400×. (D) Megamitochondria (denoted with arrow) at 800×. EM images of patient 2 (E-L). (E-I) Pleomorphic mitochondria in hepatocytes exhibit abnormal size variation, with the larger mitochondria exhibiting unusual dysmorphic convoluted stacked cristae resembling a ball of yarn. Intermixed are a few almost normal mitochondria. In all panels, matrix granules are abnormally reduced. (F) The cristae of Kupffer cell mitochondria are also abnormal to a lesser degree. (J,K) Skeletal muscle mitochondria of the same patient exhibit a subtle abnormality consisting of stacked undulating cristae with reduced matrix. (L) The cristae of the smallest muscle mitochondria differ from normal small mitochondria by unusual wavy undulating contours notable in both cross- and longitudinal profiles.

    Discussion

    Extrahepatic manifestation of QIL1 hepato-encephalopathy varies, but all 7 patients had liver disease with acute liver failure (ALF) in all but 2 patients (5 and 6). In patients 1 and 2, ALF initially appeared to be isolated prompting evaluation for liver transplantation. However, given the high rate of neurological deterioration, mitochondrial hepatopathy attributed to QIL1 ought to be a contraindication for transplantation. Whereas liver disease was the entry point in all patients, its characteristics and severity varied even within the same family. Patients 3, 4, and 7 exhibited neonatal-onset ALF. At presentation, cholestatic jaundice was present in all but 1 patient (patient 5), and gamma-glutamyl transferase (GGT) was normal in 4 patients (1, 2, 5, and 7) and elevated in the other 3. Ammonia was normal or mildly elevated. Lactic acid ranged from 2.7 to 8.6 mmol/L. All patients exhibited urinary excretion of 3MCGA. Therefore, a consistent QIL1 clinical scenario is of early onset and recurrent liver disease of variable severity, most often with cholestatic jaundice and elevated or normal GGT. In that setting, subsequent extrahepatic findings (neurological disease, optic atrophy, and ARDS) and 3MCGA are highly suggestive of QIL1.

    For patients 1 and 2, anesthesia exposure likely contributed to their decline given that their sister survived 13 months without anesthesia. ARDS was striking (patients 4 and 5), along with respiratory failure in the literature.3 This may reflect poor brainstem function with aspiration or be part of the QIL1 phenotype given that QIL1 is expressed in lung tissue.4

    Characteristic findings on liver EM helps to differentiate this condition. The stacking dysmorphia of the mitochondrial cristae may allow one to distinguish QIL1-related pathology from other metabolic or mitochondrial (mitochondrial DNA depletion syndromes) conditions. However, EM findings vary in different cell types and can be subtle. Although it is not always routine to attain biopsies, multiple images of muscle and liver tissue should be evaluated when attained.

    Ultimately, whole-exome sequencing or next-generation sequencing mitochondrial panel (patients 4-6) identified the causative variants in all three families. Because there are only 5 reported cases, QIL1 is not yet on infantile liver failure gene panels. Based on the clinical and management implications of an early diagnosis, we propose that the evaluation of an infant with ALF should include broader genetic testing, especially in the setting of transplant evaluation.

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