The MAIT TCRβ chain contributes to discrimination of microbial ligand
Gitanjali A Narayanan
Department of Pulmonary and Critical Care Medicine, Oregon Health & Science University, Portland, OR, USA
Search for more papers by this authorJames E McLaren
Division of Infection and Immunity, Cardiff University School of Medicine, Heath Park, Cardiff, UK
Search for more papers by this authorErin W Meermeier
Department of Pulmonary and Critical Care Medicine, Oregon Health & Science University, Portland, OR, USA
Search for more papers by this authorKristin Ladell
Division of Infection and Immunity, Cardiff University School of Medicine, Heath Park, Cardiff, UK
Search for more papers by this authorGwendolyn M Swarbrick
Department of Pulmonary and Critical Care Medicine, Oregon Health & Science University, Portland, OR, USA
VA Portland Health Care Center, Portland, OR, USA
Search for more papers by this authorDavid A Price
Division of Infection and Immunity, Cardiff University School of Medicine, Heath Park, Cardiff, UK
Systems Immunity Research Institute, Cardiff University School of Medicine, Heath Park, Cardiff, UK
Search for more papers by this authorJessica G Tran
VA Portland Health Care Center, Portland, OR, USA
Search for more papers by this authorAneta H Worley
VA Portland Health Care Center, Portland, OR, USA
Search for more papers by this authorEmily B Wong
Africa Health Research Institute, Durban, South Africa
Division of Infectious Diseases, Massachusetts General Hospital, Boston, MA, USA
Harvard Medical School, Boston, MA, USA
Search for more papers by this authorCorresponding Author
David M Lewinsohn
Department of Pulmonary and Critical Care Medicine, Oregon Health & Science University, Portland, OR, USA
VA Portland Health Care Center, Portland, OR, USA
Correspondence
David M Lewinsohn, Pulmonary and Critical Care Medicine, Oregon Health & Science University, 3181 SW Sam Jackson Park Rd, Mail Code VA R&D 11, Portland, OR 97239, USA.
E-mail: [email protected]
Search for more papers by this authorGitanjali A Narayanan
Department of Pulmonary and Critical Care Medicine, Oregon Health & Science University, Portland, OR, USA
Search for more papers by this authorJames E McLaren
Division of Infection and Immunity, Cardiff University School of Medicine, Heath Park, Cardiff, UK
Search for more papers by this authorErin W Meermeier
Department of Pulmonary and Critical Care Medicine, Oregon Health & Science University, Portland, OR, USA
Search for more papers by this authorKristin Ladell
Division of Infection and Immunity, Cardiff University School of Medicine, Heath Park, Cardiff, UK
Search for more papers by this authorGwendolyn M Swarbrick
Department of Pulmonary and Critical Care Medicine, Oregon Health & Science University, Portland, OR, USA
VA Portland Health Care Center, Portland, OR, USA
Search for more papers by this authorDavid A Price
Division of Infection and Immunity, Cardiff University School of Medicine, Heath Park, Cardiff, UK
Systems Immunity Research Institute, Cardiff University School of Medicine, Heath Park, Cardiff, UK
Search for more papers by this authorJessica G Tran
VA Portland Health Care Center, Portland, OR, USA
Search for more papers by this authorAneta H Worley
VA Portland Health Care Center, Portland, OR, USA
Search for more papers by this authorEmily B Wong
Africa Health Research Institute, Durban, South Africa
Division of Infectious Diseases, Massachusetts General Hospital, Boston, MA, USA
Harvard Medical School, Boston, MA, USA
Search for more papers by this authorCorresponding Author
David M Lewinsohn
Department of Pulmonary and Critical Care Medicine, Oregon Health & Science University, Portland, OR, USA
VA Portland Health Care Center, Portland, OR, USA
Correspondence
David M Lewinsohn, Pulmonary and Critical Care Medicine, Oregon Health & Science University, 3181 SW Sam Jackson Park Rd, Mail Code VA R&D 11, Portland, OR 97239, USA.
E-mail: [email protected]
Search for more papers by this authorAbstract
Mucosal-associated invariant T (MAIT) cells are key players in the immune response against microbial infection. The MAIT T-cell receptor (TCR) recognizes a diverse array of microbial ligands, and recent reports have highlighted the variability in the MAIT TCR that could further contribute to discrimination of ligand. The MAIT TCR complementarity determining region (CDR)3β sequence displays a high level of diversity across individuals, and clonotype usage appears to be dependent on antigenic exposure. To address the relationship between the MAIT TCR and microbial ligand, we utilized a previously defined panel of MAIT cell clones that demonstrated variability in responses against different microbial infections. Sequencing of these clones revealed four pairs, each with shared (identical) CDR3α and different CDR3β sequences. These pairs demonstrated varied responses against microbially infected dendritic cells as well as against 5-(2-oxopropylideneamino)-6-d-ribitylaminouracil, a ligand abundant in Salmonella enterica serovar Typhimurium, suggesting that the CDR3β contributes to differences in ligand discrimination. Taken together, these results highlight a key role for the MAIT CDR3β region in distinguishing between MR1-bound antigens and ligands.
Conflict of Interest
The authors declare no conflict of interest.
Supporting Information
Filename | Description |
---|---|
imcb12370-sup-0001-SupplTab1-Fig1.docxWord document, 192.9 KB | * |
Please note: The publisher is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.
References
- 1Le Bourhis L, Martin E, Peguillet I, et al. Antimicrobial activity of mucosal-associated invariant T cells. Nat Immunol 2010; 11: 701–708.
- 2Gold MC, Cerri S, Smyk-Pearson S, et al. Human mucosal associated invariant T cells detect bacterially infected cells. PLoS Biol 2010; 8: e1000407.
- 3Treiner E, Duban L, Bahram S, et al. Selection of evolutionarily conserved mucosal-associated invariant T cells by MR1. Nature 2003; 422: 164–169.
- 4Porcelli S, Yockey CE, Brenner MB, Balk SP. Analysis of T cell antigen receptor (TCR) expression by human peripheral blood CD4-8- alpha/beta T cells demonstrates preferential use of several V beta genes and an invariant TCR alpha chain. J Exp Med 1993; 178: 1–16.
- 5Gold MC, Eid T, Smyk-Pearson S, et al. Human thymic MR1-restricted MAIT cells are innate pathogen-reactive effectors that adapt following thymic egress. Mucosal Immunol 2013; 6: 35–44.
- 6Wilgenburg BV, Loh L, Chen Z, et al. MAIT cells contribute to protection against lethal influenza infection in vivo. Nat Commun 2018; 9: 4706.
- 7Wang H, D'Souza C, Lim XY, et al. MAIT cells protect against pulmonary Legionella longbeachae infection. Nat Commun 2018; 9: 3350.
- 8Sakala IG, Kjer-Nielsen L, Eickhoff CS, et al. Functional heterogeneity and antimycobacterial effects of mouse mucosal-associated invariant T cells specific for riboflavin metabolites. J Immunol 2015; 195: 587–601.
- 9Georgel P, Radosavljevic M, Macquin C, Bahram S. The non-conventional MHC class I MR1 molecule controls infection by Klebsiella pneumoniae in mice. Mol Immunol 2011; 48: 769–775.
- 10Meierovics A, Yankelevich W-JC, Cowley SC. MAIT cells are critical for optimal mucosal immune responses during in vivo pulmonary bacterial infection. Proc Natl Acad Sci USA 2013; 110: E3119–E3128.
- 11Meierovics AI, Cowley SC. MAIT cells promote inflammatory monocyte differentiation into dendritic cells during pulmonary intracellular infection. J Exp Med 2016; 12: 2793–2809.
- 12Tilloy F, Treiner E, Park S-HH, et al. Invariant T cell receptor chain defines a novel TAP-independent major histocompatibility complex class Ib-restricted/T cell subpopulation in mammals. J Exp Med 1999; 189: 1907–1921.
- 13Patel O, Kjer-Nielsen L, Le Nours J, et al. Recognition of vitamin B metabolites by mucosal-associated invariant T cells. Nat Commun 2013; 4: 2142.
- 14Corbett AJ, Eckle SBG, Birkinshaw RW, et al. T-cell activation by transitory neo-antigens derived from distinct microbial pathways. Nature 2014; 509: 361–365.
- 15Kjer-Nielsen L, Patel O, Corbett AJ, et al. MR1 presents microbial vitamin B metabolites to MAIT cells. Nature 2012; 491: 717–723.
- 16Lepore M, Kalinichenko A, Colone A, et al. Parallel T-cell cloning and deep sequencing of human MAIT cells reveal stable oligoclonal TCRbeta repertoire. Nat Commun 2014; 5: 3866.
- 17Lepore M, Kalinichenko A, Calogero S, et al. Functionally diverse human T cells recognize non-microbial antigens presented by MR1. Elife 2017; 6: e24476.
- 18Meermeier EW, Laugel BF, Sewell AK, et al. Human TRAV1-2-negative MR1-restricted T cells detect S. pyogenes and alternatives to MAIT riboflavin-based antigens. Nat Commun 2016; 7: 12506.
- 19Keller AN, Eckle SB, Xu W, et al. Drugs and drug-like molecules can modulate the function of mucosal-associated invariant T cells. Nat Immunol 2017; 18: 402–411.
- 20Harriff MJ, McMurtrey C, Froyd CA, et al. MR1 displays the microbial metabolome driving selective MR1-restricted T cell receptor usage. Sci Immunol 2018; 3: eaao2556.
- 21Awad W, Ler GJM, Xu W, et al. The molecular basis underpinning the potency and specificity of MAIT cell antigens. Nat Immunol 2020; 21: 400–411.
- 22López-Sagaseta J, Dulberger CL, Crooks JE, et al. The molecular basis for Mucosal-Associated Invariant T cell recognition of MR1 proteins. Proc Natl Acad Sci USA 2013; 110: E1771–E1778.
- 23Reantragoon R, Kjer-Nielsen L, Patel O, et al. Structural insight into MR1-mediated recognition of the mucosal associated invariant T cell receptor. J Exp Med 2012; 209: 761–774.
- 24Lopez-Sagaseta J, Dulberger CL, McFedries A, Cushman M, Saghatelian A, Adams EJ. MAIT recognition of a stimulatory bacterial antigen bound to MR1. J Immunol 2013; 191: 5268–5277.
- 25Reantragoon R, Corbett AJ, Sakala IG, et al. Antigen-loaded MR1 tetramers define T cell receptor heterogeneity in mucosal-associated invariant T cells. J Exp Med 2013; 210: 2305–2320.
- 26Gold MC, McLaren JE, Reistetter JA, et al. MR1-restricted MAIT cells display ligand discrimination and pathogen selectivity through distinct T cell receptor usage. J Exp Med 2014; 211: 1601–1610.
- 27Dias J, Leeansyah E, Sandberg JK. Multiple layers of heterogeneity and subset diversity in human MAIT cell responses to distinct microorganisms and to innate cytokines. Proc Natl Acad Sci USA 2017; 114: E5434–E5443.
- 28Lepore M, Kalinichenko A, Kalinicenko A, et al. Parallel T-cell cloning and deep sequencing of human MAIT cells reveal stable oligoclonal TCRβ repertoire. Nat Commun 2014; 5: 3866.
- 29Howson LJ, Napolitani G, Shepherd D, et al. MAIT cell clonal expansion and TCR repertoire shaping in human volunteers challenged with Salmonella Paratyphi A. Nat Commun 2018; 9: 253.
- 30Wong EB, Gold MC, Meermeier EW, et al. TRAV1-2+ CD8+ T-cells including oligoconal expansions of MAIT cells are enriched in the airways in human tuberculosis. Commun Biol 2019; 2: 1–2.
- 31Quigley MF, Almeida JR, Price DA, Douek DC. Unbiased molecular analysis of T cell receptor expression using template-switch anchored RT-PCR. Curr Protoc Immunol 2011; 94: 10.33.1–10.33.6.
10.1002/0471142735.im1033s94 Google Scholar
- 32Shen W-JWH-S, Xiao Q-W, Guo X, Smale S. Towards a mathematical foundation of immunology and amino acid chains. arXiv preprint arXiv 2012. Available at https://arxiv.org/abs/1205.6031.
- 33Kurioka A, Ussher JE, Cosgrove C, et al. MAIT cells are licensed through granzyme exchange to kill bacterially sensitized targets. Mucosal Immunol 2015; 8: 429–440.
- 34Ussher JE, van Wilgenburg B, Hannaway RF, et al. TLR signalling in human antigen-presenting cells regulates MR1-dependent activation of MAIT cells. Eur J Immunol 2016; 46: 1600–1614.
- 35Bánki Z, Krabbendam L, Klaver D, et al. Antibody opsonization enhances MAIT cell responsiveness to bacteria via a TNF-dependent mechanism. Immunol Cell Biol 2019; 97: 538–551.
- 36Ioannidou K, Baumgaertner P, Gannon PO, et al. Heterogeneity assessment of functional T cell avidity. Sci Rep 2017; 7: 44320.
- 37Eckle SBG, Birkinshaw RW, Kostenko L, et al. A molecular basis underpinning the T cell receptor heterogeneity of mucosal-associated invariant T cells. J Exp Med 2014; 211: 1585–600.
- 38Gherardin NA, Keller AN, Woolley RE, et al. Diversity of T cells restricted by the MHC class I-related molecule MR1 facilitates differential antigen recognition. Immunity 2016; 44: 32–45.
- 39Suliman S, Murphy M, Musvosvi M, et al. MR1-independent activation of human mucosal-associated invariant T cells by mycobacteria. J Immunol 2019; 203: 2917–2927.
- 40Ussher JE, Bilton M, Attwod E, et al. CD161++ CD8+ T cells, including the MAIT cell subset, are specifically activated by IL-12+IL-18 in a TCR-independent manner. Eur J Immunol 2014; 44: 195–203.
- 41Sharma PK, Wong EB, Napier RJ, et al. High expression of CD26 accurately identifies human bacteria-reactive MR1-restricted MAIT cells. Immunology 2015; 145: 443–453.
- 42Laugel B, Lloyd A, Meermeier EW, et al. Engineering of isogenic cells deficient for MR1 with a CRISPR/Cas9 lentiviral system: tools to study microbial antigen processing and presentation to human MR1-restricted T cells. J Immunol 2016; 197: 971–982.
- 43Leng T, Akther HD, Hackstein CP, et al. TCR and inflammatory signals tune human MAIT cells to exert specific tissue repair and effector functions. Cell Rep 2019; 28: 3077–3091.e5.
- 44Lewinsohn DM, Briden AL, Reed SG, Grabstein KH, Alderson MR. Mycobacterium tuberculosis-reactive CD8+ T lymphocytes: the relative contribution of classical versus nonclassical HLA restriction. J Immunol 2000; 165: 925–930.
- 45Price DA, Brenchley JM, Ruff LE, et al. Avidity for antigen shapes clonal dominance in CD8+ T cell populations specific for persistent DNA viruses. J Exp Med 2005; 202: 1349–1361.
- 46Lefranc MP, Pommie C, Ruiz M, et al. IMGT unique numbering for immunoglobulin and T cell receptor variable domains and Ig superfamily V-like domains. Dev Comp Immunol 2003; 27: 55–77.