Volume 47, Issue 3 pp. 445-453
ORIGINAL ARTICLE

Clinicopathologic and Molecular Characterization of NUP98-Rearranged Acute Leukemias

Sujata Sajjan

Sujata Sajjan

Department of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas, USA

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Estelle E. Oertling

Estelle E. Oertling

Department of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas, USA

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Franklin Fuda

Franklin Fuda

Department of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas, USA

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Jeffrey Gagan

Jeffrey Gagan

Department of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas, USA

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Prasad Koduru

Prasad Koduru

Department of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas, USA

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Rolando Garcia

Rolando Garcia

Department of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas, USA

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Adelaide Kwon

Adelaide Kwon

Department of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas, USA

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Elisa Lin

Elisa Lin

Department of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas, USA

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Miguel Cantu

Miguel Cantu

Department of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas, USA

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Kathleen Wilson

Kathleen Wilson

Department of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas, USA

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Olga K. Weinberg

Olga K. Weinberg

Department of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas, USA

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Mingyi Chen

Mingyi Chen

Department of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas, USA

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Jesse Manuel Jaso

Jesse Manuel Jaso

Department of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas, USA

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Tamra L. Slone

Tamra L. Slone

Department of Pediatrics, University of Texas Southwestern Medical Center, Dallas, Texas, USA

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Jamie Truscott

Jamie Truscott

Department of Pediatrics, University of Texas Southwestern Medical Center, Dallas, Texas, USA

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Julio Alvarenga Thiebaud

Julio Alvarenga Thiebaud

Department of Internal Medicine (Hematology/Oncology), University of Texas Southwestern Medical Center, Dallas, Texas, USA

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Stephen Chung

Stephen Chung

Department of Internal Medicine (Hematology/Oncology), University of Texas Southwestern Medical Center, Dallas, Texas, USA

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Yazan F. Madanat

Yazan F. Madanat

Department of Internal Medicine (Hematology/Oncology), University of Texas Southwestern Medical Center, Dallas, Texas, USA

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Weina Chen

Corresponding Author

Weina Chen

Department of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas, USA

Correspondence:

Weina Chen ([email protected])

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First published: 21 January 2025

Funding: The authors received no specific funding for this work.

Sujata Sajjan and Estelle E. Oertling are Co-first author.

ABSTRACT

Introduction

NUP98 rearrangements are rare in acute leukemias and portend a poor prognosis.

Methods

This study explored clinicopathologic and molecular features of five patients with NUP98 rearranged (NUP98-r) acute leukemias, including three females and two males with a median age of 34 years.

Results

NUP98 fusion partners were associated with distinctive leukemia characteristics and biology. Three patients had NUP98::NSD1-r acute myeloid leukemia (AML, all cytogenetically cryptic and with concomitant FLT3-ITD) and unfavorable prognoses (in two patients), one patient had NUP98::HOXA9-r AML with morphologic and immunophenotypic features resembling acute promyelocytic leukemia, and lastly, one patient had previously underreported NUP98::MLLT1-r B/T mixed phenotype acute leukemia. After a median follow-up of 24.7 months, median overall survival was 30 months and three of five patients (60%) remained in complete remission at the last follow-up.

Conclusion

Our study expands the clinical and molecular spectrum of NUP98-r acute leukemias and recommends FISH testing for NUP98 rearrangement on those leukemia cases without recurrent gene rearrangements and/or normal karyotype followed by molecular confirmation to improve timely diagnosis and clinical management.

Conflicts of Interest

Y.F.M. has received honoraria/consulting fees from BMS, Kura Oncology, BluePrint Medicines, Geron, OncLive and MD Education, VJHemOnc and Medscape Live. Y.F.M. participated in advisory boards and received honoraria from Sierra Oncology, Stemline Therapeutics, Blueprint Medicines, Morphosys, Taiho Oncology, SOBI, Rigel Pharmaceuticals, Geron, Cogent Biosciences and Novartis. Y.F.M. received travel reimbursement from Blueprint Medicines, MD Education, and Morphosys. None of these relationships were related to this work. The other authors declare no conflicts of interest.

Data Availability Statement

The data that support the findings of this study are available from the corresponding author upon reasonable request.

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