Volume 32, Issue 4 pp. 869-877
Original Research

Comparison of segmentation methods for MRI measurement of cardiac function in rats

Johannes Riegler MSc

Johannes Riegler MSc

Centre for Advanced Biomedical Imaging (CABI), Department of Medicine and Institute of Child Health, University College London (UCL), London, United Kingdom

Centre for Mathematics and Physics in the Life Sciences and Experimental Biology (CoMPLEX), UCL, London, United Kingdom

Drs. Riegler and Cheung contributed equally to this work.

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King K. Cheung PhD

King K. Cheung PhD

Centre for Advanced Biomedical Imaging (CABI), Department of Medicine and Institute of Child Health, University College London (UCL), London, United Kingdom

Department of Medical Physics and Bioengineering, UCL, London, United Kingdom

Drs. Riegler and Cheung contributed equally to this work.

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Yiu Fung Man BSc

Yiu Fung Man BSc

Centre for Advanced Biomedical Imaging (CABI), Department of Medicine and Institute of Child Health, University College London (UCL), London, United Kingdom

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Jon O. Cleary BSc

Jon O. Cleary BSc

Centre for Advanced Biomedical Imaging (CABI), Department of Medicine and Institute of Child Health, University College London (UCL), London, United Kingdom

Department of Medical Physics and Bioengineering, UCL, London, United Kingdom

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Anthony N. Price PhD

Anthony N. Price PhD

Centre for Advanced Biomedical Imaging (CABI), Department of Medicine and Institute of Child Health, University College London (UCL), London, United Kingdom

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Mark F. Lythgoe PhD

Corresponding Author

Mark F. Lythgoe PhD

Centre for Advanced Biomedical Imaging (CABI), Department of Medicine and Institute of Child Health, University College London (UCL), London, United Kingdom

Centre for Advanced Biomedical Imaging, University College London, 72 Huntley Street, London, WC1E 6DD, United KingdomSearch for more papers by this author
First published: 29 September 2010
Citations: 28

Abstract

Purpose

To establish the accuracy, intra- and inter-observer variabilities of four different segmentation methods for measuring cardiac functional parameters in healthy and infarcted rat hearts.

Materials and Methods

Six Wistar rats were imaged before and after myocardial infarction using an electrocardiogram and respiratory-gated spoiled gradient echo sequence. Blinded and randomized datasets were analyzed by various semi-automatic and manual segmentation methods to compare their measurement bias and variability. In addition, the accuracy of these methods was assessed by comparison with reference measurements acquired from high-resolution three-dimensional (3D) datasets of a heart phantom.

Results

Relative inter- and intra-observer variability were found to be similar for all four methods. Semi-automatic segmentation methods reduced analysis time by up to 70%, while yielding similar measurement bias and variability compared with manual segmentation. Semi-automatic methods were found to underestimate the ejection fraction for healthy hearts compared with manual segmentation while overestimating them in infarcted hearts. However, semi-automatic segmentation of short axis slices agreed better with 3D reference scans of a heart phantom compared with manual segmentation.

Conclusion

Semi-automatic segmentation methods are faster than manual segmentation, while offering a similar intra- and inter-observer variability. However, a potential bias has been observed between healthy and infarcted hearts for different methods, which should also be considered when selecting the most appropriate analysis technique. J. Magn. Reson. Imaging 2010;32:869–877. © 2010 Wiley-Liss, Inc.

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