Volume 33, Issue 15 e5120
SPECIAL ISSUE PAPER

Bidirectional compressive sensing for classification of gene expression data

Xiaohua Xu

Xiaohua Xu

Department of Computer Science, Yangzhou University, Yangzhou, China

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Baichuan Fan

Baichuan Fan

Department of Computer Science, Yangzhou University, Yangzhou, China

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Ping He

Corresponding Author

Ping He

Department of Computer Science, Yangzhou University, Yangzhou, China

Ping He, Department of Computer Science, Yangzhou University, Yangzhou 225000, China.

Email: [email protected]

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Yali Liang

Yali Liang

Department of Computer Science, Yangzhou University, Yangzhou, China

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Jie Ding

Jie Ding

Department of Computer Science, Yangzhou University, Yangzhou, China

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Yuan Lou

Yuan Lou

Department of Computer Science, Yangzhou University, Yangzhou, China

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Zhijun Zhang

Zhijun Zhang

Department of Computer Science, Yangzhou University, Yangzhou, China

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Xincheng Chang

Xincheng Chang

Department of Computer Science, Yangzhou University, Yangzhou, China

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First published: 27 December 2018

Present Address:

Jie Ding, China Institute of FTZ Supply Chain, Shanghai Maritime University, Shanghai, China

Summary

The classification of gene expression data is significantly important for medical diagnosis. In recent years, compressive sensing emerges as a popular sparse learning method and has been applied in different areas. It is featured with the sparse representation of data with a few atoms in the dictionary. However, the traditional compressive sensing model only focuses on the relationship among different samples but neglects the relationship among different genes. In order to take into account of the both kinds of correlation, we propose a novel bidirectional compressive sensing model for the classification of gene expression data. Under this model, we develop a novel Bi-ADMM algorithm with three different variants to solve the optimization problem. The promising experimental results on the real-world gene expression datasets demonstrate both the effectiveness and efficiency of our proposed approach.

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