Opsin, a Structural Model for Olfactory Receptors?†
Corresponding Author
Prof. Dr. Jung Hee Park
Division of Biotechnology, Advanced Institute of Environment and Bioscience, College of Environmental & Bioresources Sciences, Chonbuk National University, 570-752 Iksan (Republic of Korea)
These authors contributed equally to this work.
Jung Hee Park, Division of Biotechnology, Advanced Institute of Environment and Bioscience, College of Environmental & Bioresources Sciences, Chonbuk National University, 570-752 Iksan (Republic of Korea)
Oliver P. Ernst, Department of Biochemistry, University of Toronto, Toronto, Ontario M5S 1A8 (Canada)
Search for more papers by this authorDr. Takefumi Morizumi
Department of Biochemistry, University of Toronto, Toronto, Ontario M5S 1A8 (Canada)
These authors contributed equally to this work.
Search for more papers by this authorYafang Li
Institut für Medizinische Physik und Biophysik (CC2), Charité—Universitätsmedizin Berlin (Germany)
Present address: IMS Health, Chao Yang District, Beijing (China)
Search for more papers by this authorJoo Eun Hong
Division of Biotechnology, Advanced Institute of Environment and Bioscience, College of Environmental & Bioresources Sciences, Chonbuk National University, 570-752 Iksan (Republic of Korea)
Search for more papers by this authorProf. Dr. Emil F. Pai
Department of Biochemistry, University of Toronto, Toronto, Ontario M5S 1A8 (Canada)
Department of Molecular Genetics, University of Toronto, Toronto, Ontario M5S 1A8 (Canada)
Department of Medical Biophysics, University of Toronto (Canada)
Ontario Cancer Institute/Princess Margaret Cancer Centre, Campbell Family Institute for Cancer Research, Toronto (Canada)
Search for more papers by this authorProf. Dr. Klaus Peter Hofmann
Institut für Medizinische Physik und Biophysik (CC2), Charité—Universitätsmedizin Berlin (Germany)
Zentrum für Biophysik und Bioinformatik, Humboldt-Universität zu Berlin (Germany)
Search for more papers by this authorProf. Dr. Hui-Woog Choe
Department of Chemistry, College of Natural Science, Chonbuk National University, Chonju (Republic of Korea)
Search for more papers by this authorCorresponding Author
Prof. Dr. Oliver P. Ernst
Department of Biochemistry, University of Toronto, Toronto, Ontario M5S 1A8 (Canada)
Department of Molecular Genetics, University of Toronto, Toronto, Ontario M5S 1A8 (Canada)
Jung Hee Park, Division of Biotechnology, Advanced Institute of Environment and Bioscience, College of Environmental & Bioresources Sciences, Chonbuk National University, 570-752 Iksan (Republic of Korea)
Oliver P. Ernst, Department of Biochemistry, University of Toronto, Toronto, Ontario M5S 1A8 (Canada)
Search for more papers by this authorCorresponding Author
Prof. Dr. Jung Hee Park
Division of Biotechnology, Advanced Institute of Environment and Bioscience, College of Environmental & Bioresources Sciences, Chonbuk National University, 570-752 Iksan (Republic of Korea)
These authors contributed equally to this work.
Jung Hee Park, Division of Biotechnology, Advanced Institute of Environment and Bioscience, College of Environmental & Bioresources Sciences, Chonbuk National University, 570-752 Iksan (Republic of Korea)
Oliver P. Ernst, Department of Biochemistry, University of Toronto, Toronto, Ontario M5S 1A8 (Canada)
Search for more papers by this authorDr. Takefumi Morizumi
Department of Biochemistry, University of Toronto, Toronto, Ontario M5S 1A8 (Canada)
These authors contributed equally to this work.
Search for more papers by this authorYafang Li
Institut für Medizinische Physik und Biophysik (CC2), Charité—Universitätsmedizin Berlin (Germany)
Present address: IMS Health, Chao Yang District, Beijing (China)
Search for more papers by this authorJoo Eun Hong
Division of Biotechnology, Advanced Institute of Environment and Bioscience, College of Environmental & Bioresources Sciences, Chonbuk National University, 570-752 Iksan (Republic of Korea)
Search for more papers by this authorProf. Dr. Emil F. Pai
Department of Biochemistry, University of Toronto, Toronto, Ontario M5S 1A8 (Canada)
Department of Molecular Genetics, University of Toronto, Toronto, Ontario M5S 1A8 (Canada)
Department of Medical Biophysics, University of Toronto (Canada)
Ontario Cancer Institute/Princess Margaret Cancer Centre, Campbell Family Institute for Cancer Research, Toronto (Canada)
Search for more papers by this authorProf. Dr. Klaus Peter Hofmann
Institut für Medizinische Physik und Biophysik (CC2), Charité—Universitätsmedizin Berlin (Germany)
Zentrum für Biophysik und Bioinformatik, Humboldt-Universität zu Berlin (Germany)
Search for more papers by this authorProf. Dr. Hui-Woog Choe
Department of Chemistry, College of Natural Science, Chonbuk National University, Chonju (Republic of Korea)
Search for more papers by this authorCorresponding Author
Prof. Dr. Oliver P. Ernst
Department of Biochemistry, University of Toronto, Toronto, Ontario M5S 1A8 (Canada)
Department of Molecular Genetics, University of Toronto, Toronto, Ontario M5S 1A8 (Canada)
Jung Hee Park, Division of Biotechnology, Advanced Institute of Environment and Bioscience, College of Environmental & Bioresources Sciences, Chonbuk National University, 570-752 Iksan (Republic of Korea)
Oliver P. Ernst, Department of Biochemistry, University of Toronto, Toronto, Ontario M5S 1A8 (Canada)
Search for more papers by this authorWe thank the staff at the beamline BL14.2 at BESSY-MX/Helmholtz Zentrum Berlin for materials and energy, Yong Ju Kim for help with data collection, and Patrick Scheerer for help in early stages of the project. J.H.P. thanks Prof. Kui-Jea Lee for support. This work was supported in part by research funds of Chonbuk National University and a grant from Yu-dang, Ji Sung Yang Memorial Fund in 2011/2012 (to J.H.P.), by a grant from the Basic Science Research Program through the National Research Foundation of Korea funded by the Ministry of Education, Science and Technology (2010-0002738 to H.-W.C.), a European Research Council Advanced Grant (to K.P.H.), a grant from the Deutsche Forschungsgemeinschaft (SFB449 to O.P.E.), the Canada Research Chair program (to E.F.P.), and the Canada Excellence Research Chair program (to O.P.E.). O.P.E. holds the Anne and Max Tanenbaum Chair in Neuroscience at the University of Toronto. Coordinates and structure factors of the opsin structure have been deposited in the Protein Data Bank with accession code 4J4Q.
Graphical Abstract
Receptor–ligand interaction: Olfactory receptors (ORs) are G-protein-coupled receptors (GPCRs), which detect signaling molecules such as hormones and odorants. The structure of opsin, the GPCR employed in vision, with a detergent molecule bound deep in its orthosteric ligand-binding pocket provides a template for OR homology modeling, thus enabling investigation of the structural basis of the mechanism of odorant–receptor recognition.
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References
- 1L. Gelis, S. Wolf, H. Hatt, E. M. Neuhaus, K. Gerwert, Angew. Chem. 2012, 124, 1300–1304;
10.1002/ange.201103980 Google ScholarAngew. Chem. Int. Ed. 2012, 51, 1274–1278.
- 2
- 2aV. Katritch, V. Cherezov, R. C. Stevens, Annu. Rev. Pharmacol. Toxicol. 2013, 53, 531–556;
- 2bE. Reiter, S. Ahn, A. K. Shukla, R. J. Lefkowitz, Annu. Rev. Pharmacol. Toxicol. 2012, 52, 179–197.
- 3
- 3aB. K. Shoichet, B. K. Kobilka, Trends Pharmacol. Sci. 2012, 33, 268–272;
- 3bJ. A. Salon, D. T. Lodowski, K. Palczewski, Pharmacol. Rev. 2011, 63, 901–937.
- 4M. C. Lagerström, H. B. Schioth, Nat. Rev. Drug Discovery 2008, 7, 339–357.
- 5T. Dahoun, L. Grasso, H. Vogel, H. Pick, Biochemistry 2011, 50, 7228–7235.
- 6
- 6aS. Katada, T. Hirokawa, Y. Oka, M. Suwa, K. Touhara, J. Neurosci. 2005, 25, 1806–1815;
- 6bL. Doszczak, P. Kraft, H. P. Weber, R. Bertermann, A. Triller, H. Hatt, R. Tacke, Angew. Chem. 2007, 119, 3431–3436;
10.1002/ange.200605002 Google ScholarAngew. Chem. Int. Ed. 2007, 46, 3367–3371;
- 6cL. Charlier, J. Topin, C. Ronin, S. K. Kim, W. A. Goddard 3rd, R. Efremov, J. Golebiowski, Cell. Mol. Life Sci. 2012, 69, 4205–4213;
- 6dI. A. Solov’yov, P. Y. Chang, K. Schulten, Phys. Chem. Chem. Phys. 2012, 14, 13861–13871.
- 7I. Kufareva, M. Rueda, V. Katritch, R. C. Stevens, R. Abagyan, Structure 2011, 19, 1108–1126.
- 8M. A. Hanson et al., Science 2012, 335, 851–855; the complete reference is given in the Supporting Information.
- 9K. Palczewski et al., Science 2000, 289, 739–745; the complete reference is given in the Supporting Information.
- 10J. H. Park, P. Scheerer, K. P. Hofmann, H.-W. Choe, O. P. Ernst, Nature 2008, 454, 183–187.
- 11
- 11aX. Deupi, B. K. Kobilka, Physiology 2010, 25, 293–303;
- 11bK. P. Hofmann, P. Scheerer, P. W. Hildebrand, H.-W. Choe, J. H. Park, M. Heck, O. P. Ernst, Trends Biochem. Sci. 2009, 34, 540–552.
- 12
- 12aT. J. Melia, Jr., C. W. Cowan, J. K. Angleson, T. G. Wensel, Biophys. J. 1997, 73, 3182–3191;
- 12bJ. Fan, M. L. Woodruff, M. C. Cilluffo, R. K. Crouch, G. L. Fain, J. Physiol. 2005, 568, 83–95.
- 13R. Vogel, F. Siebert, J. Biol. Chem. 2001, 276, 38487–38493.
- 14
- 14aA. Schleicher, R. Franke, K. P. Hofmann, H. Finkelmann, W. Welte, Biochemistry 1987, 26, 5908–5916;
- 14bA. K. Kusnetzow, C. Altenbach, W. L. Hubbell, Biochemistry 2006, 45, 5538–5550.
- 15P. Scheerer, J. H. Park, P. W. Hildebrand, Y. J. Kim, N. Krauss, H.-W. Choe, K. P. Hofmann, O. P. Ernst, Nature 2008, 455, 497–502.
- 16H.-W. Choe, Y. J. Kim, J. H. Park, T. Morizumi, E. F. Pai, N. Krauss, K. P. Hofmann, P. Scheerer, O. P. Ernst, Nature 2011, 471, 651–655.
- 17X. Deupi, P. Edwards, A. Singhal, B. Nickle, D. Oprian, G. Schertler, J. Standfuss, Proc. Natl. Acad. Sci. USA 2012, 109, 119–124.
- 18S. G. Rasmussen et al., Nature 2011, 477, 549–555; the complete reference is given in the Supporting Information.
- 19W. J. De Grip, Methods Enzymol. 1982, 81, 256–265.
- 20P. W. Hildebrand, P. Scheerer, J. H. Park, H.-W. Choe, R. Piechnick, O. P. Ernst, K. P. Hofmann, M. Heck, PLoS ONE 2009, 4, e 4382.
- 21H. Zhao, L. Ivic, J. M. Otaki, M. Hashimoto, K. Mikoshiba, S. Firestein, Science 1998, 279, 237–242.
- 22R. Piechnick, E. Ritter, P. W. Hildebrand, O. P. Ernst, P. Scheerer, K. P. Hofmann, M. Heck, Proc. Natl. Acad. Sci. USA 2012, 109, 5247–5252.
- 23M. Quick, A. M. Winther, L. Shi, P. Nissen, H. Weinstein, J. A. Javitch, Proc. Natl. Acad. Sci. USA 2009, 106, 5563–5568.
- 24D. W. Corson, R. K. Crouch, Photochem. Photobiol. 1996, 63, 595–600.
- 25
- 25aL. Turin, Chem. Senses 1996, 21, 773–791;
- 25bA. Keller, L. B. Vosshall, Nat. Neurosci. 2004, 7, 337–338;
- 25cS. Gane, D. Georganakis, K. Maniati, M. Vamvakias, N. Ragoussis, E. M. Skoulakis, L. Turin, PLoS ONE 2013, 8, e 55780.