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3-Mercaptopropionate Dioxygenase (MDO)

Allison N Schmittou

Allison N Schmittou

Department of Chemistry & Biochemistry, University of Alabama, 250 Hackberry Lane, Tuscaloosa, AL, 35487 USA

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Yasmeen J Solano

Yasmeen J Solano

Department of Physiology & Biophysics, University of California Irvine School of Medicine, 837 Health Sciences Road, Irvine, CA, 92617 USA

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Philip D Kiser

Philip D Kiser

Department of Physiology & Biophysics, University of California Irvine School of Medicine, 837 Health Sciences Road, Irvine, CA, 92617 USA

Research Service, Louis Stokes Cleveland VA Medical Center, 10701 East Boulevard, Cleveland, OH, 44106 USA

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Brad S Pierce

Brad S Pierce

Department of Chemistry & Biochemistry, University of Alabama, 250 Hackberry Lane, Tuscaloosa, AL, 35487 USA

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First published: 28 April 2023

Abstract

Bacterial 3-mercaptopropionate dioxygenase (MDO) is a mononuclear nonheme iron dioxygenase that catalyzes the O2-dependent oxidation of 3-mercaptopropioniate (3MPA) to produce 3-sulfinopropionate (3SPA). MDO is a member of the cupin superfamily of proteins and therefore shares a similar active site architecture as mammalian and bacterial cysteine dioxygenases (CDOs). However, unlike CDOs, which exhibit near exclusive specificity for l-cysteine (CYS), MDOs are more flexible with respect to accommodating other thiol-bearing substrates of comparable size to 3MPA. The active site of MDO and CDO share two major structural features. First, they both contain a mononuclear nonheme iron site coordinated by three histidine residues. Since all protein-derived ligands occupy one face of an octahedron, binding of dioxygen and organic substrate occurs at the opposite face of the 3-His facial triad. Second, both enzymes share a conserved sequence of outer Fe-coordination sphere amino acids (Ser, His, and Tyr) positioned adjacent to the iron site (∼ 4 Å). These residues participate in an extended proton relay network which ultimately donates an H-bond to the enzymatic Fe-site. To date, MDOs have only been identified among Gram-negative soil proteobacteria. It is believed that the high concentration of 3MPA present in coastal sediments can be attributed to bacterial catabolism of organosulfur compounds present in saline environments. Indirect evidence also suggests that 3MPA may play a more central role in bacterial sulfur metabolism than currently understood.

3D Structure

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Three-dimensional structure of Azotobacter vinelandii 3-mercaptopropionate dioxygenase (AvMDO). Highlighted in this structure is the bidentate coordination of the competitive inhibitor, 3-hydroxypropionic acid (3HPA), to the mononuclear nonheme iron active site (PDB code: 6XB9).1

[This and all other 3D structural figures were generated using PyMOL (Schrödinger, Inc.).]

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