Detection of Mitochondrial Toxicity of Environmental Pollutants Using Caenorhabditis elegans
Laura L. Maurer
Nicholas School of the Environment, Duke University, Durham, NC, USA
Search for more papers by this authorAnthony L. Luz
Nicholas School of the Environment, Duke University, Durham, NC, USA
Search for more papers by this authorJoel N. Meyer
Nicholas School of the Environment, Duke University, Durham, NC, USA
Search for more papers by this authorLaura L. Maurer
Nicholas School of the Environment, Duke University, Durham, NC, USA
Search for more papers by this authorAnthony L. Luz
Nicholas School of the Environment, Duke University, Durham, NC, USA
Search for more papers by this authorJoel N. Meyer
Nicholas School of the Environment, Duke University, Durham, NC, USA
Search for more papers by this authorYvonne Will PhD, ATS Fellow
Pfizer Drug Safety R&D, Groton, CT, USA
Search for more papers by this authorSummary
This chapter summarizes some of what is known about environmental mitotoxicants and mechanisms of pollutant-induced mitochondrial dysfunction. It outlines some of the challenges and factors that complicate the research community's ability, and discusses the use of the nematode model organism Caenorhabditis elegans to study mitochondrial toxicity. The chapter reviews the mitochondrial biology of this organism, mitochondrial assays available, strengths and limitations of Caenorhabditis elegans, and selects mitochondrial toxicity discoveries. It also highlights some of the biological and genetic advantages that make Caenorhabditis elegans an excellent in vivo model for investigating mitochondrial toxicity. The chapter further discusses important differences that should be kept in mind when designing experiments in Caenorhabditis elegans to study disruption of mitochondrial functions by exposure to environmental contaminants. It highlights another related contribution from the Caenorhabditis elegans field: the role of mitochondria in mediating lifespan-related stress responses, which has been extensively studied in Caenorhabditis elegans.
References
- Acamovic, T. & Brooker, J. D. 2005. Biochemistry of plant secondary metabolites and their effects in animals. Proc Nutr Soc, 64, 403–12.
- Adachi, H., Fujiwara, Y. & Ishii, N. 1998. Effects of oxygen on protein carbonyl and aging in Caenorhabditis elegans mutants with long (age-1) and short (mev-1) life spans. J Gerontol A Biol Sci Med Sci, 53, B240–4.
- Adami, H. O., Berry, C. L., Breckenridge, C. B., Smith, L. L., Swenberg, J. A., Trichopoulos, D., Weiss, N. S. & Pastoor, T. P. 2011. Toxicology and epidemiology: improving the science with a framework for combining toxicological and epidemiological evidence to establish causal inference. Toxicol Sci, 122, 223–34.
- Adlimoghaddam, A., Boeckstaens, M., Marini, A. M., Treberg, J. R., Brassinga, A. K. & Weihrauch, D. 2015. Ammonia excretion in Caenorhabditis elegans: mechanism and evidence of ammonia transport of the Rhesus protein CeRhr-1. J Exp Biol, 218, 675–83.
- Agarwal, A. R., Yin, F. & Cadenas, E. 2013. Metabolic shift in lung alveolar cell mitochondria following acrolein exposure. Am J Physiol Lung Cell Mol Physiol, 305, L764–73.
- Ahringer, J. 2005. Reverse genetics (April 6, 2006). In: WormBook, ed. The C. elegans Research Community, Pasadena: WormBook.
- Alexander, A. G., Marfil, V. & Li, C. 2014. Use of Caenorhabditis elegans as a model to study Alzheimer's disease and other neurodegenerative diseases. Front Genet, 5, 279.
- Alexeyev, M., Shokolenko, I., Wilson, G. & Ledoux, S. 2013. The maintenance of mitochondrial DNA integrity: critical analysis and update. Cold Spring Harb Perspect Biol, 5, a012641.
- Allard, P., Kleinstreuer, N. C., Knudsen, T. B. & Colaiacovo, M. P. 2013. A C. elegans screening platform for the rapid assessment of chemical disruption of germline function. Environ Health Perspect, 121, 717–24.
- Anbalagan, C., Lafayette, I., Antoniou-Kourounioti, M., Gutierrez, C., Martin, J. R., Chowdhuri, D. K. & De Pomerai, D. I. 2013. Use of transgenic GFP reporter strains of the nematode Caenorhabditis elegans to investigate the patterns of stress responses induced by pesticides and by organic extracts from agricultural soils. Ecotoxicology, 22, 72–85.
- Anbalagan, C., Lafayette, I., Antoniou-Kourounioti, M., Haque, M., King, J., Johnsen, B., Baillie, D., Gutierrez, C., Martin, J. A. & De Pomerai, D. 2012. Transgenic nematodes as biosensors for metal stress in soil pore water samples. Ecotoxicology, 21, 439–55.
- Andreux, P. A., Mouchiroud, L., Wang, X., Jovaisaite, V., Mottis, A., Bichet, S., Moullan, N., Houtkooper, R. H. & Auwerx, J. 2014. A method to identify and validate mitochondrial modulators using mammalian cells and the worm C. elegans . Sci Rep, 4, 5285.
- Ankley, G. T., Bennett, R. S., Erickson, R. J., Hoff, D. J., Hornung, M. W., Johnson, R. D., Mount, D. R., Nichols, J. W., Russom, C. L., Schmieder, P. K., Serrrano, J. A., Tietge, J. E. & Villeneuve, D. L. 2010. Adverse outcome pathways: a conceptual framework to support ecotoxicology research and risk assessment. Environ Toxicol Chem, 29, 730–41.
- Antunes dos Santos, A., Appel Hort, M., Culbreth, M., Lopez-Granero, C., Farina, M., Rocha, J. B. & Aschner, M. 2016. Methylmercury and brain development: a review of recent literature. J Trace Elem Med Biol 38, 99–107.
-
Arczewska, K. D., Tomazella, G. G., Lindvall, J. M., Kassahun, H., Maglioni, S., Torgovnick, A., Henriksson, J., Matilainen, O., Marquis, B. J. & Nelson, B. C.
2013. Active transcriptomic and proteomic reprogramming in the C. elegans nucleotide excision repair mutant xpa-1. Nucleic Acids Res, 41(10), 5368–81.
10.1093/nar/gkt225 Google Scholar
- Aschner, M., Erikson, K. M., Herrero Hernandez, E. & Tjalkens, R. 2009. Manganese and its role in Parkinson's disease: from transport to neuropathology. Neuromolecular Med, 11, 252–66.
- Attene-Ramos, M. S., Huang, R., Michael, S., Witt, K. L., Richard, A., Tice, R. R., Simeonov, A., Austin, C. P. & Xia, M. 2015. Profiling of the Tox21 chemical collection for mitochondrial function to identify compounds that acutely decrease mitochondrial membrane potential. Environ Health Perspect, 123, 49–56.
- Attene-Ramos, M. S., Huang, R., Sakamuru, S., Witt, K. L., Beeson, G. C., Shou, L., Schnellmann, R. G., Beeson, C. C., Tice, R. R., Austin, C. P. & Xia, M. 2013. Systematic study of mitochondrial toxicity of environmental chemicals using quantitative high throughput screening. Chem Res Toxicol, 26, 1323–32.
- Au, C., Benedetto, A., Anderson, J., Labrousse, A., Erikson, K., Ewbank, J. J. & Aschner, M. 2009. SMF-1, SMF-2 and SMF-3 DMT1 orthologues regulate and are regulated differentially by manganese levels in C. elegans . PLoS One, 4, e7792.
- Audano, M., Ferrari, A., Fiorino, E., Kuenzl, M., Caruso, D., Mitro, N., Crestani, M. & De Fabiani, E. 2014. Energizing genetics and epi-genetics: role in the regulation of mitochondrial function. Curr Genomics, 15, 436–56.
- Back, P., Braeckman, B. P. & Matthijssens, F. 2012a. ROS in aging Caenorhabditis elegans: damage or signaling? Oxid Med Cell Longev, 2012, 608478.
- Back, P., De Vos, W. H., Depuydt, G. G., Matthijssens, F., Vanfleteren, J. R. & Braeckman, B. P. 2012b. Exploring real-time in vivo redox biology of developing and aging Caenorhabditis elegans . Free Radic Biol Med, 52, 850–9.
- Backer, J. M. & Weinstein, I. B. 1980. Mitochondrial DNA is a major cellular target for a dihydrodiol-epoxide derivative of benzo[a]pyrene. Science, 209, 297–9.
- Ballinger, S. W., Bouder, T. G., Davis, G. S., Judice, S. A., Nicklas, J. A. & Albertini, R. J. 1996. Mitochondrial genome damage associated with cigarette smoking. Cancer Res, 56, 5692–7.
- Bargmann, C. I. 1998. Neurobiology of the Caenorhabditis elegans genome. Science, 282, 2028–33.
- Begriche, K., Massart, J., Robin, M. A., Borgne-Sanchez, A. & Fromenty, B. 2011. Drug-induced toxicity on mitochondria and lipid metabolism: mechanistic diversity and deleterious consequences for the liver. J Hepatol, 54, 773–94.
- Behl, M., Hsieh, J. H., Shafer, T. J., Mundy, W. R., Rice, J. R., Boyd, W. A., Freedman, J. H., Hunter, E. S., 3RD, Jarema, K. A., Padilla, S. & Tice, R. R. 2015. Use of alternative assays to identify and prioritize organophosphorus flame retardants for potential developmental and neurotoxicity. Neurotoxicol Teratol, 52, 181–93.
- Bell, S. M. & Edwards, S. W. 2015. Identification and prioritization of relationships between environmental stressors and adverse human health impacts. Environ Health Perspect, 123, 1193–9.
-
Belloli, R., Bolzacchini, E., Clerici, L., Rindone, B., Sesana, G. & Librando, V.
2006. Nitrophenols in air and rainwater. Environ Eng Sci, 23, 405–15.
10.1089/ees.2006.23.405 Google Scholar
- Benedetti, C., Haynes, C. M., Yang, Y., Harding, H. P. & Ron, D. 2006. Ubiquitin-like protein 5 positively regulates chaperone gene expression in the mitochondrial unfolded protein response. Genetics, 174, 229–39.
- J. M. Berg, J. L. Tymoczko, & L. Stryer (Eds.) 2002. Each Organ Has a Unique Metabolic Profile. In: Biochemistry, 5th ed., New York: W H Freeman.
- Bergquist, E. R., Fischer, R. J., Sugden, K. D. & Martin, B. D. 2009. Inhibition by methylated organo-arsenicals of the respiratory 2-oxo-acid dehydrogenases. J Organomet Chem, 694, 973–80.
- Bertram, L. & Tanzi, R. E. 2005. The genetic epidemiology of neurodegenerative disease. J Clin Invest, 115, 1449–57.
- Birnbaum, L. S. & Miller, M. F. 2015. Prenatal programming and toxicity (PPTOX) introduction. Endocrinology, 156, 3405–7.
- Bishop, N. A. & Guarente, L. 2007. Two neurons mediate diet-restriction-induced longevity in C. elegans . Nature, 447, 545–9.
- Bodhicharla, R., Ryde, I. T., Prasad, G. L. & Meyer, J. N. 2014. The tobacco-specific nitrosamine 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone (NNK) induces mitochondrial and nuclear DNA damage in Caenorhabditis elegans . Environ Mol Mutagen, 55, 43–50.
- Bottema, C. K. & Parks, L. W. 1980. Sterol analysis of the inner and outer mitochondrial-membranes in yeast. Lipids, 15, 987–92.
- Boyd, W. A., Mcbride, S. J. & Freedman, J. H. 2007. Effects of genetic mutations and chemical exposures on Caenorhabditis elegans feeding: evaluation of a novel, high-throughput screening assay. PLoS One, 2, e1259.
- Boyd, W. A., McBride, S. J., Rice, J. R., Snyder, D. W. & Freedman, J. H. 2010a. A high-throughput method for assessing chemical toxicity using a Caenorhabditis elegans reproduction assay. Toxicol Appl Pharmacol, 245, 153–9.
- Boyd, W. A., Smith, M. V., Co, C. A., Pirone, J. R., Rice, J. R., Shockley, K. R. & Freedman, J. H. 2016. Developmental effects of the ToxCast phase I and phase II chemicals in Caenorhabditis elegans and corresponding responses in zebrafish, rats, and rabbits. Environ Health Perspect, 124, 586–93.
- Boyd, W. A., Smith, M. V., Kissling, G. E. & Freedman, J. H. 2010b. Medium- and high-throughput screening of neurotoxicants using C. elegans . Neurotoxicol Teratol, 32, 68–73.
- Braeckman, B. P., Houthoofd, K., De Vreese, A. & Vanfleteren, J. R. 2002. Assaying metabolic activity in ageing Caenorhabditis elegans . Mech Ageing Dev, 123, 105–19.
-
Braeckman, B. P., Houthoofd, K. & Vanfleteren, J. R.
2009. Intermediary metabolism. In: WormBook, ed. The C. elegans Research Community. WormBook, 1–24. doi: 10.1895/wormbook.1.146.1, http://www.wormbook.org (Accessed on September 15, 2017).
10.1895/wormbook.1.146.1 Google Scholar
-
Braeckman, B. P., Smolders, A., Back, P. & De Henau, S.
2016. In vivo detection of reactive oxygen species and redox status in Caenorhabditis elegans
. Antioxid Redox Signal, 25(10), 577–92.
10.1089/ars.2016.6751 Google Scholar
-
Brar, S. S., Meyer, J. N., Bortner, C. D., Van Houten, B. & Martin, W. J., 2ND
2012. Mitochondrial DNA-depleted A549 cells are resistant to bleomycin. Am J Physiol Lung Cell Mol Physiol, 303, L413–24.
10.1152/ajplung.00343.2011 Google Scholar
-
Bratic, I., Hench, J., Henriksson, J., Antebi, A., Bürglin, T. R. & Trifunovic, A.
2009. Mitochondrial DNA level, but not active replicase, is essential for Caenorhabditis elegans development. Nucleic Acids Res, 37(6), 1817–28.
10.1093/nar/gkp018 Google Scholar
- Brauer, M., Amann, M., Burnett, R. T., Cohen, A., Dentener, F., Ezzati, M., Henderson, S. B., Krzyzanowski, M., Martin, R. V., Van Dingenen, R., Van Donkelaar, A. & Thurston, G. D. 2012. Exposure assessment for estimation of the global burden of disease attributable to outdoor air pollution. Environ Sci Technol, 46, 652–60.
- Braunbeck, T. A., Teh, S. J., Lester, S. M. & Hinton, D. E. 1992. Ultrastructural alterations in liver of medaka (Oryzias latipes) exposed to diethylnitrosamine. Toxicol Pathol, 20, 179–96.
- Breckenridge, D. G., Kang, B. H., Kokel, D., Mitani, S., Staehelin, L. A. & Xue, D. 2008. Caenorhabditis elegans drp-1 and fis-2 regulate distinct cell-death execution pathways downstream of ced-3 and independent of ced-9. Mol Cell, 31, 586–97.
- Breton, S., Stewart, D. T. & Hoeh, W. R. 2010. Characterization of a mitochondrial ORF from the gender-associated mtDNAs of Mytilus spp. (Bivalvia: Mytilidae): identification of the “missing” ATPase 8 gene. Mar Genomics, 3, 11–8.
- Bridges, C. C. & Zalups, R. K. 2005. Molecular and ionic mimicry and the transport of toxic metals. Toxicol Appl Pharmacol, 204, 274–308.
- Broverman, S., Macmorris, M. & Blumenthal, T. 1993. Alteration of Caenorhabditis elegans gene expression by targeted transformation. Proc Natl Acad Sci, 90, 4359–63.
- Brunst, K. J., Baccarelli, A. A. & Wright, R. J. 2015. Integrating mitochondriomics in children's environmental health. J Appl Toxicol, 35, 976–91.
- Brys, K., Castelein, N., Matthijssens, F., Vanfleteren, J. R. & Braeckman, B. P. 2010. Disruption of insulin signalling preserves bioenergetic competence of mitochondria in ageing Caenorhabditis elegans . BMC Biol, 8, 91–91.
- Brys, K., Vanfleteren, J. R. & Braeckman, B. P. 2007. Testing the rate-of-living/oxidative damage theory of aging in the nematode model Caenorhabditis elegans . Exp Gerontol, 42, 845–51.
- Butler, J. A., Mishur, R. J., Bhaskaran, S. & Rea, S. L. 2013. A metabolic signature for long life in the Caenorhabditis elegans Mit mutants. Aging Cell, 12, 130–8.
- Butler, J. A., Ventura, N., Johnson, T. E. & Rea, S. L. 2010. Long-lived mitochondrial (Mit) mutants of Caenorhabditis elegans utilize a novel metabolism. FASEB J, 24, 4977–88.
- Cacho-Valadez, B., Munoz-Lobato, F., Pedrajas, J. R., Cabello, J., Fierro-Gonzalez, J. C., Navas, P., Swoboda, P., Link, C. D. & Miranda-Vizuete, A. 2012. The characterization of the Caenorhabditis elegans mitochondrial thioredoxin system uncovers an unexpected protective role of thioredoxin reductase 2 in beta-amyloid peptide toxicity. Antioxid Redox Signal, 16, 1384–400.
- Caito, S. W. & Aschner, M. 2015. Mitochondrial redox dysfunction and environmental exposures. Antioxid Redox Signal, 23, 578–95.
-
Caito, S. W. & Aschner, M.
2016. NAD+ supplementation attenuates methylmercury dopaminergic and mitochondrial toxicity in Caenorhabditis elegans
. Toxicol Sci, 151, 139–49.
10.1093/toxsci/kfw030 Google Scholar
- Calixto, A., Chelur, D., Topalidou, I., Chen, X. & Chalfie, M. 2010. Enhanced neuronal RNAi in C. elegans using SID-1. Nat Methods, 7, 554–9.
- Cannino, G., Ferruggia, E., Luparello, C. & Rinaldi, A. M. 2009. Cadmium and mitochondria. Mitochondrion, 9, 377–84.
- Cannon, J. R. & Greenamyre, J. T. 2011. The role of environmental exposures in neurodegeneration and neurodegenerative diseases. Toxicol Sci, 124, 225–50.
- Castelein, N., Hoogewijs, D., De Vreese, A., Braeckman, B. P. & Vanfleteren, J. R. 2008. Dietary restriction by growth in axenic medium induces discrete changes in the transcriptional output of genes involved in energy metabolism in Caenorhabditis elegans . Biotechnol J, 3, 803–12.
- Cedergreen, N. 2014. Quantifying synergy: a systematic review of mixture toxicity studies within environmental toxicology. PLoS One, 9, e96580.
- Chacko, B. K., Kramer, P. A., Ravi, S., Benavides, G. A., Mitchell, T., Dranka, B. P., Ferrick, D., Singal, A. K., Ballinger, S. W., Bailey, S. M., Hardy, R. W., Zhang, J., Zhi, D. & Darley-Usmar, V. M. 2014. The bioenergetic health index: a new concept in mitochondrial translational research. Clin Sci (Lond), 127, 367–73.
-
Chalfie, M.
1994. Green fluorescent protein as a marker for gene expression. Trends Genet, 10, 151.
10.1016/0168-9525(94)90088-4 Google Scholar
- Chávez, V., Mohri-Shiomi, A., Maadani, A., Vega, L. A. & Garsin, D. A. 2007. Oxidative stress enzymes are required for DAF-16-mediated immunity due to generation of reactive oxygen species by Caenorhabditis elegans . Genetics, 176, 1567–77.
- Chen, C., Fenk, L. A. & De Bono, M. 2013. Efficient genome editing in Caenorhabditis elegans by CRISPR-targeted homologous recombination. Nucleic Acids Res, 41, e193–e193.
- Chen, H., Detmer, S. A., Ewald, A. J., Griffin, E. E., Fraser, S. E. & Chan, D. C. 2003. Mitofusins Mfn1 and Mfn2 coordinately regulate mitochondrial fusion and are essential for embryonic development. J Cell Biol, 160, 189–200.
- Chinnery, P. F., Dimauro, S., Shanske, S., Schon, E. A., Zeviani, M., Mariotti, C., Carrara, F., Lombes, A., Laforet, P., Ogier, H., Jaksch, M., Lochmuller, H., Horvath, R., Deschauer, M., Thorburn, D. R., Bindoff, L. A., Poulton, J., Taylor, R. W., Matthews, J. N. & Turnbull, D. M. 2004. Risk of developing a mitochondrial DNA deletion disorder. Lancet, 364, 592–6.
- Chisolm, J. J., Jr., Thomas, D. J. & Hamill, T. G. 1985. Erythrocyte porphobilinogen synthase activity as an indicator of lead exposure in children. Clin Chem, 31, 601–5.
- Clemente, D. B., Casas, M., Vilahur, N., Begiristain, H., Bustamante, M., Carsin, A. E., Fernandez, M. F., Fierens, F., Gyselaers, W., Iniguez, C., Janssen, B. G., Lefebvre, W., Llop, S., Olea, N., Pedersen, M., Pieters, N., Santa Marina, L., Souto, A., Tardon, A., Vanpoucke, C., Vrijheid, M., Sunyer, J. & Nawrot, T. S. 2016. Prenatal ambient air pollution, placental mitochondrial DNA content, and birth weight in the INMA (Spain) and ENVIRONAGE (Belgium) birth cohorts. Environ Health Perspect, 124, 659–65.
- Cole, R. D., Anderson, G. L. & Williams, P. L. 2004. The nematode Caenorhabditis elegans as a model of organophosphate-induced mammalian neurotoxicity. Toxicol Appl Pharmacol, 194, 248–56.
- Consortium, C. E. S. 1998. Genome sequence of the nematode C. elegans: a platform for investigating biology. Science, 282, 2012–8.
- Coon, M. J. 2005. Cytochrome P450: nature's most versatile biological catalyst. Annu Rev Pharmacol Toxicol, 45, 1–25.
- Copeland, W. C. & Longley, M. J. 2014. Mitochondrial genome maintenance in health and disease. DNA Repair (Amst), 19, 190–8.
-
Corsi, A. K., Wightman, B. & Chalfie, M.
2015. A Transparent Window into Biology: A Primer on Caenorhabditis elegans
. In: WormBook, ed. The C. elegans Research Community. WormBook, 1–31. doi: 10.1895/wormbook.1.177.1, http://www.wormbook.org (Accessed on September 15, 2017).
10.1895/wormbook.1.177.1 Google Scholar
- Culetto, E. & Sattelle, D. B. 2000. A role for Caenorhabditis elegans in understanding the function and interactions of human disease genes. Hum Mol Genet, 9, 869–77.
- Curran, S. P. & Ruvkun, G. 2007. Lifespan regulation by evolutionarily conserved genes essential for viability. PLoS Genet, 3, e56.
- Czerniczyniec, A., Lores-Arnaiz, S. & Bustamante, J. 2013. Mitochondrial susceptibility in a model of paraquat neurotoxicity. Free Radic Res, 47, 614–23.
- D'Aquila, P., Bellizzi, D. & Passarino, G. 2015. Mitochondria in health, aging and diseases: the epigenetic perspective. Biogerontology, 16, 569–85.
-
Dancy, B. M., Brockway, N., Ramadasan-Nair, R., Yang, Y., Sedensky, M. M. & Morgan, P. G.
2016. Glutathione S-transferase mediates an ageing response to mitochondrial dysfunction. Mech Ageing Dev, 153, 14–21.
10.1016/j.mad.2015.12.001 Google Scholar
- Dancy, B. M., Sedensky, M. M. & Morgan, P. G. 2014. Effects of the mitochondrial respiratory chain on longevity in C. elegans . Exp Gerontol, 56, 245–55.
- Daniele, J. R., Heydari, K., Arriaga, E. A. & Dillin, A. 2016. Identification and characterization of mitochondrial subtypes in Caenorhabditis elegans via analysis of individual mitochondria by flow cytometry. Anal Chem, 88, 6309–16.
- Daniell, W. E., Stockbridge, H. L., Labbe, R. F., Woods, J. S., Anderson, K. E., Bissell, D. M., Bloomer, J. R., Ellefson, R. D., Moore, M. R., Pierach, C. A., Schreiber, W. E., Tefferi, A. & Franklin, G. M. 1997. Environmental chemical exposures and disturbances of heme synthesis. Environ Health Perspect, 105 Suppl 1, 37–53.
-
De Boer, R., Smith, R. L., De Vos, W. H., Manders, E. M., Brul, S. & van der Spek, H.
2015.
Caenorhabditis elegans as a model system for studying drug induced mitochondrial toxicity. PLoS One, 10, e0126220.
10.1371/journal.pone.0126220 Google Scholar
- De Voer, G., Peters, D. & Taschner, P. E. 2008. Caenorhabditis elegans as a model for lysosomal storage disorders. Biochim Biophys Acta (BBA) - Mol Basis Dis, 1782, 433–46.
- Dimauro, S. & Davidzon, G. 2005. Mitochondrial DNA and disease. Ann Med, 37, 222–32.
- Ditzel, E. J., Nguyen, T., Parker, P. & Camenisch, T. D. 2016. Effects of arsenite exposure during fetal development on energy metabolism and susceptibility to diet-induced fatty liver disease in male mice. Environ Health Perspect, 124, 201–9.
- Dong, H., Shertzer, H. G., Genter, M. B., Gonzalez, F. J., Vasiliou, V., Jefcoate, C. & Nebert, D. W. 2013. Mitochondrial targeting of mouse NQO1 and CYP1B1 proteins. Biochem Biophys Res Commun, 435, 727–32.
- Drose, S. & Brandt, U. 2012. Molecular mechanisms of superoxide production by the mitochondrial respiratory chain. Adv Exp Med Biol, 748, 145–69.
-
Du, H., Wang, M., Wang, L., Dai, H., Wang, M., Hong, W., Nie, X., Wu, L. & Xu, A.
2015. Reproductive toxicity of endosulfan: implication from germ cell apoptosis modulated by mitochondrial dysfunction and genotoxic response genes in Caenorhabditis elegans
. Toxicol Sci, 145(1), 118–27.
10.1093/toxsci/kfv035 Google Scholar
- Durieux, J., Wolff, S. & Dillin, A. 2011. The cell-non-autonomous nature of electron transport chain-mediated longevity. Cell, 144, 79–91.
- Dykens, J. A. & Will, Y. 2007. The significance of mitochondrial toxicity testing in drug development. Drug Discov Today, 12, 777–85.
- Edwards, S. W., Tan, Y. M., Villeneuve, D. L., Meek, M. E. & McQueen, C. A. 2016. Adverse outcome pathways-organizing toxicological information to improve decision making. J Pharmacol Exp Ther, 356, 170–81.
- Egeghy, P. P., Judson, R., Gangwal, S., Mosher, S., Smith, D., Vail, J. & Cohen Hubal, E. A. 2012. The exposure data landscape for manufactured chemicals. Sci Total Environ, 414, 159–66.
-
Evans, T.
2006. Transformation and Microinjection (April 6, 2006). In: WormBook, ed. The C. elegans Research Community. WormBook. doi: 10.1895/wormbook.1.108.1, http://www.wormbook.org (Accessed on September 15, 2017).
10.1895/wormbook.1.108.1 Google Scholar
- Falk, M., Zhang, Z., Rosenjack, J., Nissim, I., Daikhin, E., Sedensky, M., Yudkoff, M. & Morgan, P. 2008. Metabolic pathway profiling of mitochondrial respiratory chain mutants in C. elegans . Mol Genet Metab, 93, 388–97.
- Farina, M., Avila, D. S., Da Rocha, J. B. & Aschner, M. 2013. Metals, oxidative stress and neurodegeneration: a focus on iron, manganese and mercury. Neurochem Int, 62, 575–94.
- Fariss, M. W., Chan, C. B., Patel, M., Van Houten, B. & Orrenius, S. 2005. Role of mitochondria in toxic oxidative stress. Mol Interv, 5, 94–111.
- Feng, J., Bussière, F. & Hekimi, S. 2001. Mitochondrial electron transport is a key determinant of life span in Caenorhabditis elegans . Dev Cell, 1, 633–44.
- Ferguson, M., Boyer, M. & Sprando, R. 2010. A method for ranking compounds based on their relative toxicity using neural networking, C. elegans, axenic liquid culture, and the COPAS parameters TOF and EXT. Open Access Bioinforma, 2010, 139–44.
- Ferreira, D. W., Chen, Y. & Allard, P. 2014. Using the Alternative Model C. elegans in Reproductive and Developmental Toxicology Studies. In: Developmental and Reproductive Toxicology, ed. A. S. Faqi, New York: Humana Press.
- Finsterer, J. & Ohnsorge, P. 2013. Influence of mitochondrion-toxic agents on the cardiovascular system. Regul Toxicol Pharmacol, 67, 434–45.
- Fire, A., Xu, S., Montgomery, M. K., Kostas, S. A., Driver, S. E. & Mello, C. C. 1998. Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans . Nature, 391, 806–11.
- Firnhaber, C. & Hammarlund, M. 2013. Neuron-specific feeding RNAi in C. elegans and its use in a screen for essential genes required for GABA neuron function. PLoS Genet, 9, e1003921.
- Frank, S., Gaume, B., Bergmann-Leitner, E. S., Leitner, W. W., Robert, E. G., Catez, F., Smith, C. L. & Youle, R. J. 2001. The role of dynamin-related protein 1, a mediator of mitochondrial fission, in apoptosis. Dev Cell, 1, 515–25.
- Friedland, A. E., Tzur, Y. B., Esvelt, K. M., Colaiácovo, M. P., Church, G. M. & Calarco, J. A. 2013. Heritable genome editing in C. elegans via a CRISPR-Cas9 system. Nat Methods, 10, 741–3.
- Frøkjær-Jensen, C., Davis, M. W., Ailion, M. & Jorgensen, E. M. 2012. Improved Mos1-mediated transgenesis in C. elegans . Nat Methods, 9, 117–8.
- Frøkjær-Jensen, C., Davis, M. W., Hopkins, C. E., Newman, B. J., Thummel, J. M., Olesen, S.-P., Grunnet, M. & Jorgensen, E. M. 2008. Single-copy insertion of transgenes in Caenorhabditis elegans . Nat Genet, 40, 1375–83.
- Fuller, B. F., Cortes, D. F., Landis, M. K., Yohannes, H., Griffin, H. E., Stafflinger, J. E., Bowers, M. S., Lewis, M. H., Fox, M. A. & Ottens, A. K. 2012. Exposure of rats to environmental tobacco smoke during cerebellar development alters behavior and perturbs mitochondrial energetics. Environ Health Perspect, 120, 1684–91.
- Futsaeter, G. & Wilson, S. 2013. The UNEP Global Mercury Assessment: Sources, Emissions and Transport. Proceedings of the 16th International Conference on Heavy Metals in the Environment, E3S Web of Conference, Rome, Italy, vol. 1, April 2013.
- Fyfe, J. C., Al-Tamimi, R. A., Liu, J., Schaffer, A. A., Agarwala, R. & Henthorn, P. S. 2011. A novel mitofusin 2 mutation causes canine fetal-onset neuroaxonal dystrophy. Neurogenetics, 12, 223–32.
- Gaffney, C. J., Bass, J. J., Barratt, T. F. & Szewczyk, N. J. 2014. Methods to assess subcellular compartments of muscle in C. elegans . J Vis Exp, 93, e52043.
- Gall, E. T., Carter, E. M., Earnest, C. M. & Stephens, B. 2013. Indoor air pollution in developing countries: research and implementation needs for improvements in global public health. Am J Public Health, 103, E67–72.
- Gandre, S. & Van Der Bliek, A. M. 2007. Mitochondrial division in Caenorhabditis elegans . Methods Mol Biol, 372, 485–501.
- Gaskova, D., Decorby, A. & Lemire, B. D. 2007. DiS-C3(3) monitoring of in vivo mitochondrial membrane potential in C. elegans . Biochem Biophys Res Commun, 354, 814–9.
- Gebhard, D., Mahler, B., Matt, K., Burger, K. & Bergemann, J. 2014. Mitochondrial DNA copy number: but not a mitochondrial tandem CC to TT transition—is increased in sun-exposed skin. Exp Dermatol, 23, 209–11.
- Goldstone, J. V., Goldstone, H. M., Morrison, A. M., Tarrant, A., Kern, S. E., Woodin, B. R. & Stegeman, J. J. 2007. Cytochrome P450 1 genes in early deuterostomes (tunicates and sea urchins) and vertebrates (chicken and frog): origin and diversification of the CYP1 gene family. Mol Biol Evol, 24, 2619–31.
- Gomez-Eyles, J. L., Svendsen, C., Lister, L., Martin, H., Hodson, M. E. & Spurgeon, D. J. 2009. Measuring and modelling mixture toxicity of imidacloprid and thiacloprid on Caenorhabditis elegans and Eisenia fetida . Ecotoxicol Environ Saf, 72, 71–9.
- Gonzalez-Hunt, C. P., Leung, M. C., Bodhicharla, R. K., McKeever, M. G., Arrant, A. E., Margillo, K. M., Ryde, I. T., Cyr, D. D., Kosmaczewski, S. G., Hammarlund, M. & Meyer, J. N. 2014. Exposure to mitochondrial genotoxins and dopaminergic neurodegeneration in Caenorhabditis elegans . PLoS One, 9, e114459.
-
Gonzalez-Hunt, C. P., Rooney, J. P., Ryde, I. T., Anbalagan, C., Joglekar, R. & Meyer, J. N.
2016. PCR-Based analysis of mitochondrial DNA copy number, mitochondrial DNA damage, and nuclear DNA damage. Curr Protoc Toxicol, 67, 20.11.1–25.
10.1002/0471140856.tx2011s67 Google Scholar
- Gotoh, O. 1998. Divergent structures of Caenorhabditis elegans cytochrome P450 genes suggest the frequent loss and gain of introns during the evolution of nematodes. Mol Biol Evol, 15, 1447–59.
- Grad, L. I. & Lemire, B. D. 2004. Mitochondrial complex I mutations in Caenorhabditis elegans produce cytochrome c oxidase deficiency, oxidative stress and vitamin-responsive lactic acidosis. Hum Mol Genet, 13, 303–14.
- Grad, L. I., Sayles, L. C. & Lemire, B. D. 2007. Isolation and functional analysis of mitochondria from the nematode Caenorhabditis elegans . Methods Mol Biol, 372, 51–66.
- Grevendonk, L., Janssen, B. G., Vanpoucke, C., Lefebvre, W., Hoxha, M., Bollati, V. & Nawrot, T. S. 2016. Mitochondrial oxidative DNA damage and exposure to particulate air pollution in mother-newborn pairs. Environ Health, 15, 10.
- Grosche, J., Matyash, V., Moller, T., Verkhratsky, A., Reichenbach, A. & Kettenmann, H. 1999. Microdomains for neuron-glia interaction: parallel fiber signaling to Bergmann glial cells. Nat Neurosci, 2, 139–43.
- Grundlingh, J., Dargan, P. I., El-Zanfaly, M. & Wood, D. M. 2011. 2,4-dinitrophenol (DNP): a weight loss agent with significant acute toxicity and risk of death. J Med Toxicol, 7, 205–12.
- Grynberg, A. & Demaison, L. 1996. Fatty acid oxidation in the heart. J Cardiovasc Pharmacol, 28 Suppl 1, S11–7.
- Guengerich, F. P. 2008. Cytochrome p450 and chemical toxicology. Chem Res Toxicol, 21, 70–83.
- Gupta, R. K., Schuh, R. A., Fiskum, G. & Flaws, J. A. 2006. Methoxychlor causes mitochondrial dysfunction and oxidative damage in the mouse ovary. Toxicol Appl Pharmacol, 216, 436–45.
- Hamilton, B., Dong, Y., Shindo, M., Liu, W., Odell, I., Ruvkun, G. & Lee, S. S. 2005. A systematic RNAi screen for longevity genes in C. elegans . Genes Dev, 19, 1544–55.
- Hanna, S. K., Cooksey, G. A., Dong, S., Nelson, B. C., Mao, L., Elliott, J. T., Petersen, E. J. 2016. Feasibility of using a standardized Caenorhabditis elegans toxicity test to assess nanomaterial toxicity. Environ Sci Nano, 3, 10.
- Harborne, J. B. 1988. Plant Toxins and Their Effects on Animals. In: Introduction to Ecological Biochemistry, ed. J. B. Harborne, 3rd ed., London: Academic Press.
- Harrington, A. J., Hamamichi, S., Caldwell, G. A. & Caldwell, K. A. 2010. C. elegans as a model organism to investigate molecular pathways involved with Parkinson's disease. Dev Dyn, 239, 1282–95.
- Harrison, M. A. J., Barra, S., Borghesi, D., Vione, D., Arsene, C. & Olariu, R. L. 2005. Nitrated phenols in the atmosphere: a review. Atmos Environ, 39, 231–48.
- Hashimoto, M., Rockenstein, E., Crews, L. & Masliah, E. 2003. Role of protein aggregation in mitochondrial dysfunction and neurodegeneration in Alzheimer's and Parkinson's diseases. Neuromolecular Med, 4, 21–36.
- Haugen, A. C., Di Prospero, N. A., Parker, J. S., Fannin, R. D., Chou, J., Meyer, J. N., Halweg, C., Collins, J. B., Durr, A., Fischbeck, K. & Van Houten, B. 2010. Altered gene expression and DNA damage in peripheral blood cells from Friedreich's ataxia patients: cellular model of pathology. PLoS Genet, 6, e1000812.
- Haun, C., Alexander, J., Stainier, D. Y. & Okkema, P. G. 1998. Rescue of Caenorhabditis elegans pharyngeal development by a vertebrate heart specification gene. Proc Natl Acad Sci U S A, 95, 5072–5.
- Haynes, C. M., Petrova, K., Benedetti, C., Yang, Y. & Ron, D. 2007. ClpP mediates activation of a mitochondrial unfolded protein response in C. elegans . Dev Cell, 13, 467–80.
- Hedgecock, E. M., Sulston, J. E. & Thomson, J. N. 1983. Mutations affecting programmed cell deaths in the nematode Caenorhabditis elegans . Science, 220, 1277–9.
- Hench, J., Bratic Hench, I., Pujol, C., Ipsen, S., Brodesser, S., Mourier, A., Tolnay, M., Frank, S. & Trifunovic, A. 2011. A tissue-specific approach to the analysis of metabolic changes in Caenorhabditis elegans . PLoS One, 6, e28417.
- Henricson, A., Sonnhammer, E. L., Baillie, D. L. & Gomes, A. V. 2004. Functional characterization in Caenorhabditis elegans of transmembrane worm-human orthologs. BMC Genomics, 5, 85.
- Hernberg, S., Nikkanen, J., Mellin, G. & Lilius, H. 1970. Delta-aminolevulinic acid dehydrase as a measure of lead exposure. Arch Environ Health, 21, 140–5.
- Hobert, O. 2005. The Neuronal Genome of Caenorhabditis elegans . In WormBook, ed. The Online Review of C. elegans Biology, Pasadena: WormBook.
- Hobert, O., Johnston, R. J., Jr. & Chang, S. 2002. Left-right asymmetry in the nervous system: the Caenorhabditis elegans model. Nat Rev Neurosci, 3, 629–40.
- Homedan, C., Laafi, J., Schmitt, C., Gueguen, N., Lefebvre, T., Karim, Z., Desquiret-Dumas, V., Wetterwald, C., Deybach, J. C., Gouya, L., Puy, H., Reynier, P. & Malthiery, Y. 2014. Acute intermittent porphyria causes hepatic mitochondrial energetic failure in a mouse model. Int J Biochem Cell Biol, 51, 93–101.
-
Horsman, J. W. & Miller, D. L.
2016. Mitochondrial sulfide quinone oxidoreductase prevents activation of the unfolded protein response in hydrogen sulfide. J Biol Chem, 291, 5320–5.
10.1074/jbc.M115.697102 Google Scholar
- Hosseini, M. J., Shaki, F., Ghazi-Khansari, M. & Pourahmad, J. 2013. Toxicity of arsenic (III) on isolated liver mitochondria: a new mechanistic approach. Iran J Pharm Res, 12, 121–38.
- Houck, K. A., Dix, D. J., Judson, R. S., Kavlock, R. J., Yang, J. & Berg, E. L. 2009. Profiling bioactivity of the ToxCast chemical library using BioMAP primary human cell systems. J Biomol Screen, 14, 1054–66.
- Houtkooper, R. H., Mouchiroud, L., Ryu, D., Moullan, N., Katsyuba, E., Knott, G., Williams, R. W. & Auwerx, J. 2013. Mitonuclear protein imbalance as a conserved longevity mechanism. Nature, 497, 451–7.
- Howell, N., Elson, J. L., Chinnery, P. F. & Turnbull, D. M. 2005. mtDNA mutations and common neurodegenerative disorders. Trends Genet, 21, 583–6.
- Huang, J. & Lemire, B. D. 2009. Mutations in the C. elegans succinate dehydrogenase iron–sulfur subunit promote superoxide generation and premature aging. J Mol Biol, 387, 559–69.
- Hunt, P. R. 2016. The C. elegans model in toxicity testing. J Appl Toxicol 37, 50–9.
- Hunt, P. R., Marquis, B. J., Tyner, K. M., Conklin, S., Olejnik, N., Nelson, B. C. & Sprando, R. L. 2013. Nanosilver suppresses growth and induces oxidative damage to DNA in Caenorhabditis elegans . J Appl Toxicol, 33, 1131–42.
- Hunt, P. R., Olejnik, N. & Sprando, R. L. 2012. Toxicity ranking of heavy metals with screening method using adult Caenorhabditis elegans and propidium iodide replicates toxicity ranking in rat. Food Chem Toxicol, 50, 3280–90.
- Hunter, S. E., Jung, D., Di Giulio, R. T. & Meyer, J. N. 2010. The QPCR assay for analysis of mitochondrial DNA damage, repair, and relative copy number. Methods, 51, 444–51.
- Hunter, T., Bannister, W. H. & Hunter, G. J. 1997. Cloning, expression, and characterization of two manganese superoxide dismutases from Caenorhabditis elegans . J Biol Chem, 272, 28652–9.
- Ichishita, R., Tanaka, K., Sugiura, Y., Sayano, T., Mihara, K. & Oka, T. 2008. An RNAi screen for mitochondrial proteins required to maintain the morphology of the organelle in Caenorhabditis elegans . J Biochem, 143, 449–54.
- Iser, W. B., Kim, D., Bachman, E. & Wolkow, C. 2005. Examination of the requirement for ucp-4, a putative homolog of mammalian uncoupling proteins, for stress tolerance and longevity in C. elegans . Mech Ageing Dev, 126, 1090–6.
- Jaffe, E. K. 2003. An unusual phylogenetic variation in the metal ion binding sites of porphobilinogen synthase. Chem Biol, 10, 25–34.
- Jaffe, E. K., Bagla, S. & Michini, P. A. 1991. Reevaluation of a sensitive indicator of early lead exposure. Measurement of porphobilinogen synthase in blood. Biol Trace Elem Res, 28, 223–31.
-
Jager, T., Gudmundsdottir, E. M. & Cedergreen, N.
2014. Dynamic modeling of sublethal mixture toxicity in the nematode Caenorhabditis elegans
. Environ Sci Technol, 48, 7026–33.
10.1021/es501306t Google Scholar
- Jarema, K. A., Hunter, D. L., Shaffer, R. M., Behl, M. & Padilla, S. 2015. Acute and developmental behavioral effects of flame retardants and related chemicals in zebrafish. Neurotoxicol Teratol, 52, 194–209.
- Jarrell, T. A., Wang, Y., Bloniarz, A. E., Brittin, C. A., Xu, M., Thomson, J. N., Albertson, D. G., Hall, D. H. & Emmons, S. W. 2012. The connectome of a decision-making neural network. Science, 337, 437–44.
- Ji, C., Guo, W., Zhang, M., Lu, X., Ni, Y. & Guo, X. 2012. Caenorhabditis elegans ucp-4 regulates fat metabolism: suppression of ucp-4 expression induced obese phenotype and caused impairment of insulin like pathway. Gene, 491, 158–64.
- Judson, R., Richard, A., Dix, D. J., Houck, K., Martin, M., Kavlock, R., Dellarco, V., Henry, T., Holderman, T., Sayre, P., Tan, S., Carpenter, T. & Smith, E. 2009. The toxicity data landscape for environmental chemicals. Environ Health Perspect, 117, 685–95.
- Jung, D., Cho, Y., Collins, L. B., Swenberg, J. A. & Di Giulio, R. T. 2009. Effects of benzo[a]pyrene on mitochondrial and nuclear DNA damage in Atlantic killifish (Fundulus heteroclitus) from a creosote-contaminated and reference site. Aquat Toxicol, 95, 44–51.
- Kagan, V. E., Tyurina, Y. Y., Tyurin, V. A., Mohammadyani, D., Angeli, J. P., Baranov, S. V., Klein-Seetharaman, J., Friedlander, R. M., Mallampalli, R. K., Conrad, M. & Bayir, H. 2015. Cardiolipin signaling mechanisms: collapse of asymmetry and oxidation. Antioxid Redox Signal, 22, 1667–80.
- Kaletta, T. & Hengartner, M. O. 2006. Finding function in novel targets: C. elegans as a model organism. Nat Rev Drug Discov, 5, 387–98.
- Kamath, R. S., Fraser, A. G., Dong, Y., Poulin, G., Durbin, R., Gotta, M., Kanapin, A., Le Bot, N., Moreno, S., Sohrmann, M., Welchman, D. P., Zipperlen, P. & Ahringer, J. 2003. Systematic functional analysis of the Caenorhabditis elegans genome using RNAi. Nature, 421, 231–7.
- Kaminsky, Y. G., Tikhonova, L. A. & Kosenko, E. A. 2015. Critical analysis of Alzheimer's amyloid-beta toxicity to mitochondria. Front Biosci (Landmark Ed), 20, 173–97.
- Karami-Mohajeri, S. & Abdollahi, M. 2013. Mitochondrial dysfunction and organophosphorus compounds. Toxicol Appl Pharmacol, 270, 39–44.
- Kasiviswanathan, R., Gustafson, M. A., Copeland, W. C. & Meyer, J. N. 2012. Human mitochondrial DNA polymerase gamma exhibits potential for bypass and mutagenesis at UV-induced cyclobutane thymine dimers. J Biol Chem, 287, 9222–9.
- Kayser, E. B., Morgan, P. G., Hoppel, C. L. & Sedensky, M. M. 2001. Mitochondrial expression and function of GAS-1 in Caenorhabditis elegans . J Biol Chem, 276, 20551–8.
-
Kayser, E. B., Sedensky, M. M. & Morgan, P. G.
2016. Region-specific defects of respiratory capacities in the Ndufs4(KO) mouse brain. PLoS One, 11, e0148219.
10.1371/journal.pone.0148219 Google Scholar
- Kayser, E. B., Sedensky, M. M., Morgan, P. G. & Hoppel, C. L. 2004. Mitochondrial oxidative phosphorylation is defective in the long-lived mutant clk-1. J Biol Chem, 279, 54479–86.
- Kelly, W. G., Xu, S., Montgomery, M. K. & Fire, A. 1997. Distinct requirements for somatic and germline expression of a generally expressed Caernorhabditis elegans gene. Genetics, 146, 227–38.
- Kim, H. Y., Kim, H. R., Kang, M. G., Trang, N. T., Baek, H. J., Moon, J. D., Shin, J. H., Suh, S. P., Ryang, D. W., Kook, H. & Shin, M. G. 2014. Profiling of biomarkers for the exposure of polycyclic aromatic hydrocarbons: lamin-A/C isoform 3, poly[ADP-ribose] polymerase 1, and mitochondria copy number are identified as universal biomarkers. Biomed Res Int, 2014, 605135.
-
Kim, J. T. & Lee, H. K.
2014. Metabolic syndrome and the environmental pollutants from mitochondrial perspectives. Rev Endocr Metab Disord, 15, 253–62.
10.1007/s11154-014-9297-5 Google Scholar
- Kimble, J. & Hirsh, D. 1979. The postembryonic cell lineages of the hermaphrodite and male gonads in Caenorhabditis elegans . Dev Biol, 70, 396–417.
- Kimura, K., Tanaka, N., Nakamura, N., Takano, S. & Ohkuma, S. 2007. Knockdown of mitochondrial heat shock protein 70 promotes progeria-like phenotypes in Caenorhabditis elegans . J Biol Chem, 282, 5910–8.
- Kirstein-Miles, J. & Morimoto, R. I. 2010. Caenorhabditis elegans as a model system to study intercompartmental proteostasis: interrelation of mitochondrial function, longevity, and neurodegenerative diseases. Dev Dyn, 239, 1529–38.
- Kitchin, K. T. & Wallace, K. 2008. The role of protein binding of trivalent arsenicals in arsenic carcinogenesis and toxicity. J Inorg Biochem, 102, 532–9.
- Knecht, A. L., Goodale, B. C., Truong, L., Simonich, M. T., Swanson, A. J., Matzke, M. M., Anderson, K. A., Waters, K. M. & Tanguay, R. L. 2013. Comparative developmental toxicity of environmentally relevant oxygenated PAHs. Toxicol Appl Pharmacol, 271, 266–75.
- Kodavanti, P. R., Derr-Yellin, E. C., Mundy, W. R., Shafer, T. J., Herr, D. W., Barone, S., Choksi, N. Y., Macphail, R. C. & Tilson, H. A. 1998. Repeated exposure of adult rats to Aroclor 1254 causes brain region-specific changes in intracellular Ca2+ buffering and protein kinase C activity in the absence of changes in tyrosine hydroxylase. Toxicol Appl Pharmacol, 153, 186–98.
- Koopman, M., Michels, H., Dancy, B. M., Kamble, R., Mouchiroud, L., Auwerx, J., Nollen, E. A. & Houtkooper, R. H. 2016. A screening-based platform for the assessment of cellular respiration in Caenorhabditis elegans . Nat Protoc, 11, 1798–816.
- Koudinova, N. V., Berezov, T. T. & Koudinov, A. R. 1996. Multiple inhibitory effects of Alzheimer's peptide Abeta1-40 on lipid biosynthesis in cultured human HepG2 cells. FEBS Lett, 395, 204–6.
-
Kozma, B. & Eide, M. J.
2014. Photocarcinogenesis: an epidemiologic perspective on ultraviolet light and skin cancer. Dermatol Clin, 32, 301–13, viii.
10.1016/j.det.2014.03.004 Google Scholar
-
Kubik, L. L., Landis, R. W., Remmer, H., Bergin, I. L. & Philbert, M. A.
2015. 1,3-dinitrobenzene induces age- and region-specific oxidation to mitochondria-related proteins in brain. Toxicol Sci, 145, 48–58.
10.1093/toxsci/kfv015 Google Scholar
- Kubik, L. L. & Philbert, M. A. 2015. The role of astrocyte mitochondria in differential regional susceptibility to environmental neurotoxicants: tools for understanding neurodegeneration. Toxicol Sci, 144, 7–16.
- Kühnl, J., Bobik, T., Procter, J. B., Burmeister, C., Höppner, J., Wilde, I., Lüersen, K., Torda, A. E., Walter, R. D. & Liebau, E. 2005. Functional analysis of the methylmalonyl-CoA epimerase from Caenorhabditis elegans . FEBS J, 272, 1465–77.
- Kurzchalia, T. V. & Ward, S. 2003. Why do worms need cholesterol? Nat Cell Biol, 5, 684–8.
-
Kutscher, L. M. & Shaham, S.
2014. Forward and Reverse Mutagenesis in C. elegans
. WormBook, ed. The C. elegans Research Community, WormBook. 1–26. doi: 10.1895/wormbook.1.167.1, http://www.wormbook.org.
10.1895/wormbook.1.167.1 Google Scholar
- Kuwabara, P. & O'Neil, N. 2001. The use of functional genomics in C. elegans for studying human development and disease. J Inherit Metab Dis, 24, 127–38.
- Kuznetsov, A. V. & Margreiter, R. 2009. Heterogeneity of mitochondria and mitochondrial function within cells as another level of mitochondrial complexity. Int J Mol Sci, 10, 1911–29.
-
Kwon, J. T., Minai-Tehrani, A., Hwang, S. K., Kim, J. E., Shin, J. Y., Yu, K. N., Chang, S. H., Kim, D. S., Kwon, Y. T., Choi, I. J., Cheong, Y. H., Kim, J. S. & Cho, M. H.
2012. Acute pulmonary toxicity and body distribution of inhaled metallic silver nanoparticles. Toxicol Res, 28, 25–31.
10.5487/TR.2012.28.1.025 Google Scholar
- Labuschagne, C. F., Stigter, E. C., Hendriks, M. M., Berger, R., Rokach, J., Korswagen, H. C. & Brenkman, A. B. 2013. Quantification of in vivo oxidative damage in Caenorhabditis elegans during aging by endogenous F3-isoprostane measurement. Aging Cell, 12, 214–23.
- Lagido, C., McLaggan, D. & Glover, L. A. 2015. A screenable in vivo assay for mitochondrial modulators using transgenic bioluminescent Caenorhabditis elegans . J Vis Exp, e53083. doi:10.3791/53083.
- Lagido, C., Pettitt, J., Flett, A. & Glover, L. A. 2008. Bridging the phenotypic gap: real-time assessment of mitochondrial function and metabolism of the nematode Caenorhabditis elegans . BMC Physiol, 8, 7.
- Lagido, C., Pettitt, J., Porter, A., Paton, G. & Glover, L. 2001. Development and application of bioluminescent Caenorhabditis elegans as multicellular eukaryotic biosensors. FEBS Lett, 493, 36–9.
- Lakroun, Z., Kebieche, M., Lahouel, A., Zama, D., Desor, F. & Soulimani, R. 2015. Oxidative stress and brain mitochondria swelling induced by endosulfan and protective role of quercetin in rat. Environ Sci Pollut Res Int, 22, 7776–81.
- Lakshmanan, U., Yap, A., Fulwood, J., Yichun, L., Siew Hoon, S., Lim, J., Ting, A., Hui Sem, X., Kreisberg, J. F. & Tan, P. 2014. Establishment of a novel whole animal HTS technology platform for melioidosis drug discovery. Comb Chem High Throughput Screen, 17, 790–803.
- Lawrence, S. H., Selwood, T. & Jaffe, E. K. 2013. Environmental contaminants perturb fragile protein assemblies and inhibit normal protein function. Curr Chem Biol, 7, 196–206.
- Lee Do, Y., Xun, Z., Platt, V., Budworth, H., Canaria, C. A. & McMurray, C. T. 2013. Distinct pools of non-glycolytic substrates differentiate brain regions and prime region-specific responses of mitochondria. PLoS One, 8, e68831.
- Lee, K. K. & Boelsterli, U. A. 2014. Bypassing the compromised mitochondrial electron transport with methylene blue alleviates efavirenz/isoniazid-induced oxidant stress and mitochondria-mediated cell death in mouse hepatocytes. Redox Biol, 2, 599–609.
- Lee, R. C., Feinbaum, R. L. & Ambros, V. 1993. The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell, 75, 843–54.
- Lee, S. S., Lee, R. Y., Fraser, A. G., Kamath, R. S., Ahringer, J. & Ruvkun, G. 2003. A systematic RNAi screen identifies a critical role for mitochondria in C. elegans longevity. Nat Genet, 33, 40–8.
- Lemire, B. D., Behrendt, M., Decorby, A. & Gaskova, D. 2009. C. elegans longevity pathways converge to decrease mitochondrial membrane potential. Mech Ageing Dev, 130, 461–5.
- Leung, C. K., Deonarine, A., Strange, K. & Choe, K. P. 2011. High-throughput screening and biosensing with fluorescent C. elegans strains. J Vis Exp, e2745. doi: 10.3791/2745.
- Leung, C. K., Wang, Y., Malany, S., Deonarine, A., Nguyen, K., Vasile, S. & Choe, K. P. 2013a. An ultra high-throughput, whole-animal screen for small molecule modulators of a specific genetic pathway in Caenorhabditis elegans . PLoS One, 8, e62166.
- Leung, M. C., Goldstone, J. V., Boyd, W. A., Freedman, J. H. & Meyer, J. N. 2010. Caenorhabditis elegans generates biologically relevant levels of genotoxic metabolites from aflatoxin B1 but not benzo[a]pyrene in vivo. Toxicol Sci, 118, 444–53.
- Leung, M. C., Rooney, J. P., Ryde, I. T., Bernal, A. J., Bess, A. S., Crocker, T. L., Ji, A. Q. & Meyer, J. N. 2013b. Effects of early life exposure to ultraviolet C radiation on mitochondrial DNA content, transcription, ATP production, and oxygen consumption in developing Caenorhabditis elegans . BMC Pharmacol Toxicol, 14, 9.
- Leung, M. C., Williams, P. L., Benedetto, A., Au, C., Helmcke, K. J., Aschner, M. & Meyer, J. N. 2008. Caenorhabditis elegans: an emerging model in biomedical and environmental toxicology. Toxicol Sci, 106, 5–28.
- Li, R. J., Kou, X. J., Geng, H., Xie, J. F., Yang, Z. H., Zhang, Y. X., Cai, Z. W. & Dong, C. 2015. Effect of ambient PM2.5 on lung mitochondrial damage and fusion/fission gene expression in rats. Chem Res Toxicol, 28, 408–18.
- Li, Y., Gao, S., Jing, H., Qi, L., Ning, J., Tan, Z., Yang, K., Zhao, C., Ma, L. & Li, G. 2013. Correlation of chemical acute toxicity between the nematode and the rodent. Toxicol Res, 2, 403–12.
- Libina, N., Berman, J. R. & Kenyon, C. 2003. Tissue-specific activities of C. elegans DAF-16 in the regulation of lifespan. Cell, 115, 489–502.
- Lioy, P. J. & Rappaport, S. M. 2011. Exposure science and the exposome: an opportunity for coherence in the environmental health sciences. Environ Health Perspect, 119, A466–7.
- Liu, Y., Samuel, B. S., Breen, P. C. & Ruvkun, G. 2014. Caenorhabditis elegans pathways that surveil and defend mitochondria. Nature, 508, 406–10.
-
Lopert, P. & Patel, M.
2016. Mitochondrial mechanisms of redox cycling agents implicated in Parkinson's disease. J Neural Transm (Vienna), 123, 113–23.
10.1007/s00702-015-1386-4 Google Scholar
- Lu, T., Aron, L., Zullo, J., Pan, Y., Kim, H., Chen, Y., Yang, T.-H., Kim, H.-M., Drake, D. & Liu, X. S. 2014. REST and stress resistance in ageing and Alzheimer/'s disease. Nature, 507, 448–54.
- Lucanic, M., Garrett, T., Yu, I., Calahorro, F., Asadi Shahmirzadi, A., Miller, A., Gill, M. S., Hughes, R. E., Holden-Dye, L. & Lithgow, G. J. 2016. Chemical activation of a food deprivation signal extends lifespan. Aging cell, 15, 832–41.
- Luch, A. 2005. Nature and nurture: lessons from chemical carcinogenesis. Nat Rev Cancer, 5, 113–25.
- Lundby, Z., Camacho, J. & Allard, P. 2016. Fast functional germline and epigenetic assays in the nematode Caenorhabditis elegans . Methods Mol Biol, 1473, 99–107.
- Luz, A. L., Godebo, T. R., Bhatt, D. P., Ilkayeva, O. R., Maurer, L. L., Hirschey, M. D. & Meyer, J. N. 2016. Arsenite uncouples mitochondrial respiration and induces a Warburg-like effect in Caenorhabditis elegans . Toxicol Sci., 152, 349–62.
- Luz, A. L., Rooney, J. P., Kubik, L. L., Gonzalez, C. P., Song, D. H. & Meyer, J. N. 2015a. Mitochondrial morphology and fundamental parameters of the mitochondrial respiratory chain are altered in Caenorhabditis elegans strains deficient in mitochondrial dynamics and homeostasis processes. PLoS One, 10, e0130940.
-
Luz, A. L., Smith, L. L., Rooney, J. P. & Meyer, J. N.
2015b. Seahorse Xfe 24 extracellular flux analyzer-based analysis of cellular respiration in Caenorhabditis elegans
. Curr Protoc Toxicol, 66, 25.7.1–15.
10.1002/0471140856.tx2507s66 Google Scholar
- Maglioni, S. & Ventura, N. 2016. C. elegans as a model organism for human mitochondrial associated disorders. Mitochondrion, 30, 117–25.
- Mansoor, S., Gupta, N., Falatoonzadeh, P., Kuppermann, B. D. & Kenney, M. C. 2014. 2-ethylpyridine, a cigarette smoke component, causes mitochondrial damage in human retinal pigment epithelial cells in vitro. Indian J Ophthalmol, 62, 16–22.
- Marroquin, L. D., Hynes, J., Dykens, J. A., Jamieson, J. D. & Will, Y. 2007. Circumventing the crabtree effect: replacing media glucose with galactose increases susceptibility of HepG2 cells to mitochondrial toxicants. Toxicol Sci, 97, 539–47.
-
Martinez, B. A., Kim, H., Ray, A., Caldwell, G. A. & Caldwell, K. A.
2015. A bacterial metabolite induces glutathione-tractable proteostatic damage, proteasomal disturbances, and PINK1-dependent autophagy in C. elegans
. Cell Death Dis, 6, e1908.
10.1038/cddis.2015.270 Google Scholar
- Massaro, G. D., Gail, D. B. & Massaro, D. 1975. Lung oxygen consumption and mitochondria of alveolar epithelial and endothelial cells. J Appl Physiol, 38, 588–92.
- Mattson, M. P. 2008a. Hormesis and disease resistance: activation of cellular stress response pathways. Hum Exp Toxicol, 27, 155–62.
- Mattson, M. P. 2008b. Hormesis defined. Ageing Res Rev, 7, 1–7.
- Maurer, L. L. & Meyer, J. N. 2016. A systematic review of evidence for silver nanoparticle-induced mitochondrial toxicity. Environ Sci Nano, 3, 311–22.
-
Maurer, L. L., Ryde, I. T., Yang, X. & Meyer, J. N.
2015.
Caenorhabditis elegans as a model for toxic effects of nanoparticles: lethality, growth, and reproduction. Curr Protoc Toxicol, 66, 20.10.1–25.
10.1002/0471140856.tx2010s66 Google Scholar
-
McVey, K. A., Snapp, I. B., Johnson, M. B., Negga, R., Pressley, A. S. & Fitsanakis, V. A.
2016. Exposure of C. elegans eggs to a glyphosate-containing herbicide leads to abnormal neuronal morphology. Neurotoxicol Teratol, 55, 23–31.
10.1016/j.ntt.2016.03.002 Google Scholar
- Mello, C. & Fire, A. 1995. DNA transformation. Methods Cell Biol, 48, 451–82.
- Mello, C. C., Kramer, J. M., Stinchcomb, D. & Ambros, V. 1991. Efficient gene transfer in C. elegans: extrachromosomal maintenance and integration of transforming sequences. EMBO J, 10, 3959.
- Melov, S., Hertz, G. Z., Stormo, G. D. & Johnson, T. E. 1994. Detection of deletions in the mitochondrial genome of Caenorhabditis elegans . Nucleic Acids Res, 22, 1075–8.
- Melov, S., Lithgow, G. J., Fischer, D. R., Tedesco, P. M. & Johnson, T. E. 1995. Increased frequency of deletions in the mitochondrial genome with age of Caenorhabditis elegans . Nucleic Acids Res, 23, 1419–25.
- Merrick, B. A., Paules, R. S. & Tice, R. R. 2015. Intersection of toxicogenomics and high throughput screening in the Tox21 program: an NIEHS perspective. Int J Biotechnol, 14, 7–27.
- Meyer, J. N. 2010. QPCR: a tool for analysis of mitochondrial and nuclear DNA damage in ecotoxicology. Ecotoxicology, 19, 804–11.
- Meyer, J. N., Leung, M. C., Rooney, J. P., Sendoel, A., Hengartner, M. O., Kisby, G. E. & Bess, A. S. 2013. Mitochondria as a target of environmental toxicants. Toxicol Sci, 134, 1–17.
- Mohammad, M. K., Avila, D., Zhang, J., Barve, S., Arteel, G., McClain, C. & Joshi-Barve, S. 2012. Acrolein cytotoxicity in hepatocytes involves endoplasmic reticulum stress, mitochondrial dysfunction and oxidative stress. Toxicol Appl Pharmacol, 265, 73–82.
- Monks, T. J., Hanzlik, R. P., Cohen, G. M., Ross, D. & Graham, D. G. 1992. Quinone chemistry and toxicity. Toxicol Appl Pharmacol, 112, 2–16.
- Montero, J., Mari, M., Colell, A., Morales, A., Basanez, G., Garcia-Ruiz, C. & Fernandez-Checa, J. C. 2010. Cholesterol and peroxidized cardiolipin in mitochondrial membrane properties, permeabilization and cell death. Biochim Biophys Acta, 1797, 1217–24.
- Morcos, M., Du, X., Pfisterer, F., Hutter, H., Sayed, A. A., Thornalley, P., Ahmed, N., Baynes, J., Thorpe, S. & Kukudov, G. 2008. Glyoxalase-1 prevents mitochondrial protein modification and enhances lifespan in Caenorhabditis elegans . Aging Cell, 7, 260–9.
- Moreira, A. C., Machado, N. G., Bernardo, T. C., Sardao, V. A. & Oliveira, P. J. 2011. Mitochondria as a Biosensor for Drug-Induced Toxicity: Is It Really Relevant? In: Biosensors for Health, Environment, and Biosecurity, ed. P. A. Serra, Rijeka: InTech.
-
Morgan, P. G., Higdon, R., Kolker, N., Bauman, A., Ilkayeva, O., Newgard, C., Kolker, E., Steele, L. & Sedensky, M. M.
2015. Comparison of proteomic and metabolomic profiles of mutants of the mitochondrial respiratory chain in Caenorhabditis elegans
. Mitochondrion, 20, 95–102.
10.1016/j.mito.2014.12.004 Google Scholar
- Motori, E., Puyal, J., Toni, N., Ghanem, A., Angeloni, C., Malaguti, M., Cantelli-Forti, G., Berninger, B., Conzelmann, K. K., Gotz, M., Winklhofer, K. F., Hrelia, S. & Bergami, M. 2013. Inflammation-induced alteration of astrocyte mitochondrial dynamics requires autophagy for mitochondrial network maintenance. Cell Metab, 18, 844–59.
- Munkacsy, E., Khan, M. H., Lane, R. K., Borror, M. B., Park, J. H., Bokov, A. F., Fisher, A. L., Link, C. D. & Rea, S. L. 2016. DLK-1, SEK-3 and PMK-3 are required for the life extension induced by mitochondrial bioenergetic disruption in C. elegans . PLoS Genet, 12, e1006133.
- Murfitt, R. R., Vogel, K. & Sanadi, D. R. 1976. Characterization of the mitochondria of the free-living nematode, Caenorhabditis elegans . Comp Biochem Physiol B, 53, 423–30.
- Murphy, M. P. 2009. How mitochondria produce reactive oxygen species. Biochem J, 417, 1–13.
- Nadanaciva, S. & Will, Y. 2011a. Investigating mitochondrial dysfunction to increase drug safety in the pharmaceutical industry. Curr Drug Targets, 12, 774–82.
- Nadanaciva, S. & Will, Y. 2011b. New insights in drug-induced mitochondrial toxicity. Curr Pharm Des, 17, 2100–12.
- Naranmandura, H., Xu, S., Sawata, T., Hao, W. H., Liu, H., Bu, N., Ogra, Y., Lou, Y. J. & Suzuki, N. 2011. Mitochondria are the main target organelle for trivalent monomethylarsonous acid (MMA(III))-induced cytotoxicity. Chem Res Toxicol, 24, 1094–103.
- Nargund, A. M., Pellegrino, M. W., Fiorese, C. J., Baker, B. M. & Haynes, C. M. 2012. Mitochondrial import efficiency of ATFS-1 regulates mitochondrial UPR activation. Science, 337, 587–90.
- Naviaux, R. K. 2014. Metabolic features of the cell danger response. Mitochondrion, 16, 7–17.
- Nebert, D. W., Dalton, T. P., Okey, A. B. & Gonzalez, F. J. 2004. Role of aryl hydrocarbon receptor-mediated induction of the CYP1 enzymes in environmental toxicity and cancer. J Biol Chem, 279, 23847–50.
- Negga, R., Stuart, J. A., Machen, M. L., Salva, J., Lizek, A. J., Richardson, S. J., Osborne, A. S., Mirallas, O., McVey, K. A. & Fitsanakis, V. A. 2012. Exposure to glyphosate- and/or Mn/Zn-ethylene-bis-dithiocarbamate-containing pesticides leads to degeneration of gamma-aminobutyric acid and dopamine neurons in Caenorhabditis elegans . Neurotox Res, 21, 281–90.
- Nemeti, B., Regonesi, M. E., Tortora, P. & Gregus, Z. 2010. Polynucleotide phosphorylase and mitochondrial ATP synthase mediate reduction of arsenate to the more toxic arsenite by forming arsenylated analogues of ADP and ATP. Toxicol Sci, 117, 270–81.
- Nichols, C. E., Shepherd, D. L., Knuckles, T. L., Thapa, D., Stricker, J. C., Stapleton, P. A., Minarchick, V. C., Erdely, A., Zeidler-Erdely, P. C., Alway, S. E., Nurkiewicz, T. R. & Hollander, J. M. 2015. Cardiac and mitochondrial dysfunction following acute pulmonary exposure to mountaintop removal mining particulate matter. Am J Physiol Heart Circ Physiol, 309, H2017–30.
- O'Riordan, V. B. & Burnell, A. M. 1989. Intermediary metabolism in the dauer larva of the nematode Caenorhabditis elegans—1. Glycolysis, gluconeogenesis, oxidative phosphorylation and the tricarboxylic acid cycle. Comp Biochem Physiol B Comp Biochem, 92, 233–8.
- Oikonomou, G. & Shaham, S. 2011. The glia of Caenorhabditis elegans . Glia, 59, 1253–63.
- Okimoto, R., Macfarlane, J. L., Clary, D. O. & Wolstenholme, D. R. 1992. The mitochondrial genomes of two nematodes, Caenorhabditis elegans and Ascaris suum . Genetics, 130, 471–98.
-
Oliveri, A. N., Bailey, J. M. & Levin, E. D.
2015. Developmental exposure to organophosphate flame retardants causes behavioral effects in larval and adult zebrafish. Neurotoxicol Teratol, 52, 220–7.
10.1016/j.ntt.2015.08.008 Google Scholar
- Paek, J., Lo, J. Y., Narasimhan, S. D., Nguyen, T. N., Glover-Cutter, K., Robida-Stubbs, S., Suzuki, T., Yamamoto, M., Blackwell, T. K. & Curran, S. P. 2012. Mitochondrial SKN-1/Nrf mediates a conserved starvation response. Cell Metab, 16, 526–37.
- Palikaras, K., Lionaki, E. & Tavernarakis, N. 2015a. Balancing mitochondrial biogenesis and mitophagy to maintain energy metabolism homeostasis. Cell Death Differ, 22, 1399–401.
- Palikaras, K., Lionaki, E. & Tavernarakis, N. 2015b. Coordination of mitophagy and mitochondrial biogenesis during ageing in C. elegans . Nature, 521, 525–8.
- Palmeira, C. M. & Wallace, K. B. 1997. Benzoquinone inhibits the voltage-dependent induction of the mitochondrial permeability transition caused by redox-cycling naphthoquinones. Toxicol Appl Pharmacol, 143, 338–47.
- Park, S. K., Tao, Y., Meeker, J. D., Harlow, S. D. & Mukherjee, B. 2014. Environmental risk score as a new tool to examine multi-pollutants in epidemiologic research: an example from the NHANES study using serum lipid levels. PLoS One, 9, e98632.
- Parodi, D. A., Damoiseaux, R. & Allard, P. 2015. Comprehensive assessment of germline chemical toxicity using the nematode Caenorhabditis elegans. J Vis Exp, 52445. doi: 10.3791/52445.
- Partridge, F. A., Tearle, A. W., Gravato-Nobre, M. J., Schafer, W. R. & Hodgkin, J. 2008. The C. elegans glycosyltransferase BUS-8 has two distinct and essential roles in epidermal morphogenesis. Dev Biol, 317, 549–59.
- Pattle, R. E., Schock, C., Dirnhuber, P. & Creasey, J. M. 1972. Lamellar transformation of lung mitochondria under conditions of stress. Nature, 240, 468–9.
- Pereira, C. V., Moreira, A. C., Pereira, S. P., Machado, N. G., Carvalho, F. S., Sardao, V. A. & Oliveira, P. J. 2009. Investigating drug-induced mitochondrial toxicity: a biosensor to increase drug safety? Curr Drug Saf, 4, 34–54.
- Perry, S. W., Norman, J. P., Barbieri, J., Brown, E. B. & Gelbard, H. A. 2011. Mitochondrial membrane potential probes and the proton gradient: a practical usage guide. Biotechniques, 50, 98.
- Peterson, R. T., Nass, R., Boyd, W. A., Freedman, J. H., Dong, K. & Narahashi, T. 2008. Use of non-mammalian alternative models for neurotoxicological study. Neurotoxicology, 29, 546–55.
- Petrascheck, M., Ye, X. & Buck, L. B. 2007. An antidepressant that extends lifespan in adult Caenorhabditis elegans . Nature, 450, 553–6.
- Petrascheck, M., Ye, X. & Buck, L. B. 2009. A high-throughput screen for chemicals that increase the lifespan of Caenorhabditis elegans . Ann N Y Acad Sci, 1170, 698–701.
- Pfeiffer, M., Kayzer, E.-B., Yang, X., Abramson, E., Kenaston, M. A., Lago, C. U., Lo, H.-H., Sedensky, M. M., Lunceford, A. & Clarke, C. F. 2011. Caenorhabditis elegans UCP4 protein controls complex II-mediated oxidative phosphorylation through succinate transport. J Biological Chem, 286, 37712–20.
- Piquereau, J., Novotova, M., Fortin, D., Garnier, A., Ventura-Clapier, R., Veksler, V. & Joubert, F. 2010. Postnatal development of mouse heart: formation of energetic microdomains. J Physiol, 588, 2443–54.
- Pon, L. A., Schon, E. A. 2007. Mitochondria. San Diego, CA:Academic Press.
- Porta, M. 2012. Human contamination by environmental chemical pollutants: can we assess it more properly? Prev Med, 55, 560–2.
- Powell-Coffman, J. A. 2010. Hypoxia signaling and resistance in C. elegans . Trends Endocrinol Metab, 21, 435–40.
- Powell-Coffman, J. A., Bradfield, C. A. & Wood, W. B. 1998. Caenorhabditis elegans orthologs of the aryl hydrocarbon receptor and its heterodimerization partner the aryl hydrocarbon receptor nuclear translocator. Proc Natl Acad Sci U S A, 95, 2844–9.
- Praitis, V., Casey, E., Collar, D. & Austin, J. 2001. Creation of low-copy integrated transgenic lines in Caenorhabditis elegans . Genetics, 157, 1217–26.
- Prakash, C., Soni, M. & Kumar, V. 2016. Mitochondrial oxidative stress and dysfunction in arsenic neurotoxicity: a review. J Appl Toxicol, 36, 179–88.
- Preziosi, P. 2007. Isoniazid: metabolic aspects and toxicological correlates. Curr Drug Metab, 8, 839–51.
- Pulak, R. 2006. Techniques for analysis, sorting, and dispensing of C. elegans on the COPAS flow-sorting system. Methods Mol Biol, 351, 275–86.
- Qadota, H., Inoue, M., Hikita, T., Köppen, M., Hardin, J. D., Amano, M., Moerman, D. G. & Kaibuchi, K. 2007. Establishment of a tissue-specific RNAi system in C. elegans . Gene, 400, 166–73.
- Ragan, C., Wilson, M., Darley-Usmar, V. & Lowe, P. 1987. Subfractionation of mitochondria and isolation of the proteins of oxidative phosphorylation. In: Mitochondria: A Practical Approach, eds. V. Darley-Usmar, D. Rickwood, M. T. Wilson Mitochondria, Oxford: IRL Press, 79–112.
- Rajagopal, A., Rao, A. U., Amigo, J., Tian, M., Upadhyay, S. K., Hall, C., Uhm, S., Mathew, M. K., Fleming, M. D., Paw, B. H., Krause, M. & Hamza, I. 2008. Haem homeostasis is regulated by the conserved and concerted functions of HRG-1 proteins. Nature, 453, 1127–31.
-
Ranjan, M., Gruber, J., Ng, L. F. & Halliwell, B.
2013. Repression of the mitochondrial peroxiredoxin antioxidant system does not shorten life span but causes reduced fitness in Caenorhabditis elegans
. Free Radic Biol Med, 63, 381–9.
10.1016/j.freeradbiomed.2013.05.025 Google Scholar
- Rao, A. U., Carta, L. K., Lesuisse, E. & Hamza, I. 2005. Lack of heme synthesis in a free-living eukaryote. Proc Natl Acad Sci U S A, 102, 4270–5.
- Rao, K. V. & Norenberg, M. D. 2004. Manganese induces the mitochondrial permeability transition in cultured astrocytes. J Biol Chem, 279, 32333–8.
- Rappaport, S. M. 2012. Discovering environmental causes of disease. J Epidemiol Community Health, 66, 99–102.
- Rappaport, S. M., Barupal, D. K., Wishart, D., Vineis, P. & Scalbert, A. 2014. The blood exposome and its role in discovering causes of disease. Environ Health Perspect, 122, 769–74.
- Rauthan, M. & Pilon, M. 2015. A chemical screen to identify inducers of the mitochondrial unfolded protein response in C. elegans . Worm, 4, e1096490, Taylor & Francis.
- Ray, A., Martinez, B. A., Berkowitz, L. A., Caldwell, G. A. & Caldwell, K. A. 2014. Mitochondrial dysfunction, oxidative stress, and neurodegeneration elicited by a bacterial metabolite in a C. elegans Parkinson's model. Cell Death Dis, 5, e984.
- Rea, S. L., Ventura, N. & Johnson, T. E. 2007. Relationship between mitochondrial electron transport chain dysfunction, development, and life extension in Caenorhabditis elegans . PLoS Biol, 5, e259.
-
Regueiro, J., Olguin, N., Simal-Gandara, J. & Sunol, C.
2015. Toxicity evaluation of new agricultural fungicides in primary cultured cortical neurons. Environ Res, 140, 37–44.
10.1016/j.envres.2015.03.013 Google Scholar
- Robb, E. L., Gawel, J. M., Aksentijevic, D., Cocheme, H. M., Stewart, T. S., Shchepinova, M. M., Qiang, H., Prime, T. A., Bright, T. P., James, A. M., Shattock, M. J., Senn, H. M., Hartley, R. C. & Murphy, M. P. 2015. Selective superoxide generation within mitochondria by the targeted redox cycler MitoParaquat. Free Radic Biol Med, 89, 883–94.
- Robey, R. B., Weisz, J., Kuemmerle, N., Salzberg, A. C., Berg, A., Brown, D., Kubik, L., Palorini, R., Al-Mulla, F., Al-Temaimi, R., Colacci, A., Mondello, C., Raju, J., Woodrick, J., Scovassi, A. I., Singh, N., Vaccari, M., Roy, R., Forte, S., Memeo, L., Salem, H. K., Amedei, A., Hamid, R. A., Williams, G. P., Lowe, L., Meyer, J., Martin, F. L., Bisson, W. H., Chiaradonna, F. & Ryan, E. P. 2015. Metabolic reprogramming and dysregulated metabolism: cause, consequence and/or enabler of environmental carcinogenesis? Carcinogenesis, 36, S203–31.
- Roede, J. R. & Jones, D. P. 2010. Reactive species and mitochondrial dysfunction: mechanistic significance of 4-hydroxynonenal. Environ Mol Mutagen, 51, 380–90.
-
Roemgens, A., Singh, S., Beyer, C. & Arnold, S.
2011. Inducers of chemical hypoxia act in a gender- and brain region-specific manner on primary astrocyte viability and cytochrome C oxidase. Neurotox Res, 20, 1–14.
10.1007/s12640-010-9213-z Google Scholar
- Roerink, S. F., Koole, W., Stapel, L. C., Romeijn, R. J. & Tijsterman, M. 2012. A broad requirement for TLS polymerases eta and kappa, and interacting sumoylation and nuclear pore proteins, in lesion bypass during C. elegans embryogenesis. PLoS Genet, 8, e1002800.
- Rolland, S. G. 2014. How to analyze mitochondrial morphology in healthy cells and apoptotic cells in Caenorhabditis elegans . Methods Enzymol, 544, 75–98.
- Rolland, S. G., Lu, Y., David, C. N. & Conradt, B. 2009. The BCL-2-like protein CED-9 of C. elegans promotes FZO-1/Mfn1,2- and EAT-3/Opa1-dependent mitochondrial fusion. J Cell Biol, 186, 525–40.
- Romero, A., Potter, M. F. & Haynes, K. F. 2010. Evaluation of chlorfenapyr for control of the bed bug, Cimex lectularius L. Pest Manag Sci, 66, 1243–8.
- Rooney, J. P., Luz, A. L., Gonzalez-Hunt, C. P., Bodhicharla, R., Ryde, I. T., Anbalagan, C. & Meyer, J. N. 2014. Effects of 5′-fluoro-2-deoxyuridine on mitochondrial biology in Caenorhabditis elegans . Exp Gerontol, 56, 69–76.
- Rooney, J. P., Ryde, I. T., Sanders, L. H., Howlett, E. H., Colton, M. D., Germ, K. E., Mayer, G. D., Greenamyre, J. T. & Meyer, J. N. 2015. PCR based determination of mitochondrial DNA copy number in multiple species. Methods Mol Biol, 1241, 23–38.
- Ross, M. F., Kelso, G. F., Blaikie, F. H., James, A. M., Cocheme, H. M., Filipovska, A., Da Ros, T., Hurd, T. R., Smith, R. A. & Murphy, M. P. 2005. Lipophilic triphenylphosphonium cations as tools in mitochondrial bioenergetics and free radical biology. Biochemistry (Mosc), 70, 222–30.
- Rothstein, M. 1968. Nematode biochemistry. IX. Lack of sterol biosynthesis in free-living nematodes. Comp Biochem Physiol, 27, 309–17.
- Rual, J. F., Ceron, J., Koreth, J., Hao, T., Nicot, A. S., Hirozane-Kishikawa, T., Vandenhaute, J., Orkin, S. H., Hill, D. E., Van Den Heuvel, S. & Vidal, M. 2004. Toward improving Caenorhabditis elegans phenome mapping with an ORFeome-based RNAi library. Genome Res, 14, 2162–8.
- Saben, J. L., Boudoures, A. L., Asghar, Z., Thompson, A., Drury, A., Zhang, W., Chi, M., Cusumano, A., Scheaffer, S. & Moley, K. H. 2016. Maternal metabolic syndrome programs mitochondrial dysfunction via germline changes across three generations. Cell Rep, 16, 1–8.
- Sabri, M. I. 1998. Toxin Induced Mitochondrial Dysfunction and Neurodegeneration. In: Mitochondrial DNA Mutations in Aging, Disease, and Cancer, ed. K. K. Singh, Berlin: Springer-Verlag.
-
Sahu, S. N., Lewis, J., Patel, I., Bozdag, S., Lee, J. H., Sprando, R. & Cinar, H. N.
2013. Genomic analysis of stress response against arsenic in Caenorhabditis elegans
. PLoS One, 8, e66431.
10.1371/journal.pone.0066431 Google Scholar
- Salem, A. F., Al-Zoubi, M. S., Whitaker-Menezes, D., Martinez-Outschoorn, U. E., Lamb, R., Hulit, J., Howell, A., Gandara, R., Sartini, M., Galbiati, F., Bevilacqua, G., Sotgia, F. & Lisanti, M. P. 2013. Cigarette smoke metabolically promotes cancer, via autophagy and premature aging in the host stromal microenvironment. Cell Cycle, 12, 818–25.
- Samann, J., Hegermann, J., Von Gromoff, E., Eimer, S., Baumeister, R. & Schmidt, E. 2009. Caenorhabditits elegans LRK-1 and PINK-1 act antagonistically in stress response and neurite outgrowth. J Biol Chem, 284, 16482–91.
- Sanders, L. H., Howlett, E. H., McCoy, J. & Greenamyre, J. T. 2014. Mitochondrial DNA damage as a peripheral biomarker for mitochondrial toxin exposure in rats. Toxicol Sci, 142, 395–402.
- Schaar, C. E., Dues, D. J., Spielbauer, K. K., Machiela, E., Cooper, J. F., Senchuk, M., Hekimi, S. & Van Raamsdonk, J. M. 2015. Mitochondrial and cytoplasmic ROS have opposing effects on lifespan. PLoS Genet, 11, e1004972.
- Scheibye-Knudsen, M., Fang, E. F., Croteau, D. L., Wilson, D. M., 3rd & Bohr, V. A. 2015. Protecting the mitochondrial powerhouse. Trends Cell Biol, 25, 158–70.
- Schmeisser, S., Schmeisser, K., Weimer, S., Groth, M., Priebe, S., Fazius, E., Kuhlow, D., Pick, D., Einax, J. W., Guthke, R., Platzer, M., Zarse, K. & Ristow, M. 2013. Mitochondrial hormesis links low-dose arsenite exposure to lifespan extension. Aging Cell, 12, 508–17.
- Schmid, R. 1960. Cutaneous porphyria in Turkey. N Engl J Med, 263, 397–8.
- Schumacker, P. T., Gillespie, M. N., Nakahira, K., Choi, A. M., Crouser, E. D., Piantadosi, C. A. & Bhattacharya, J. 2014. Mitochondria in lung biology and pathology: more than just a powerhouse. Am J Physiol Lung Cell Mol Physiol, 306, L962–74.
- Sciacco, M. & Bonilla, E. 1996. [43]Cytochemistry and immunocytochemistry of mitochondria in tissue sections. Methods Enzymol, 264, 509–21.
- Segel, L. D. & Mason, D. T. 1979. Acute effects of acetaldehyde and ethanol on rat heart mitochondria. Res Commun Chem Pathol Pharmacol, 25, 461–74.
- Sen, P. & Biswas, T. 2013. Arsenic: the largest mass poisoning of a population in history. BMJ, 346, f3625.
- Senft, A. P., Dalton, T. P., Nebert, D. W., Genter, M. B., Puga, A., Hutchinson, R. J., Kerzee, J. K., Uno, S. & Shertzer, H. G. 2002. Mitochondrial reactive oxygen production is dependent on the aromatic hydrocarbon receptor. Free Radic Biol Med, 33, 1268–78.
- Shadel, G. S. & Horvath, T. L. 2015. Mitochondrial ROS signaling in organismal homeostasis. Cell, 163, 560–9.
- Shah, I., Setzer, R. W., Jack, J., Houck, K. A., Judson, R. S., Knudsen, T. B., Liu, J., Martin, M. T., Reif, D. M., Richard, A. M., Thomas, R. S., Crofton, K. M., Dix, D. J. & Kavlock, R. J. 2015. Using ToxCast data to reconstruct dynamic cell state trajectories and estimate toxicological points of departure. Environ Health Perspect, 124, 910–9.
-
Shao, Y., Figeys, D., Ning, Z., Mailloux, R. & Chan, H. M.
2015. Methylmercury can induce Parkinson's-like neurotoxicity similar to 1-methyl-4- phenylpyridinium: a genomic and proteomic analysis on MN9D dopaminergic neuron cells. J Toxicol Sci, 40, 817–28.
10.2131/jts.40.817 Google Scholar
- Shaughnessy, D. T., McAllister, K., Worth, L., Haugen, A. C., Meyer, J. N., Domann, F. E., Van Houten, B., Mostoslavsky, R., Bultman, S. J., Baccarelli, A. A., Begley, T. J., Sobol, R., Hirschey, M. D., Ideker, T., Santos, J. H., Copeland, W. C., Tice, R. R., Balshaw, D. M. & Tyson, F. L. 2014. Mitochondria, energetics, epigenetics, and cellular responses to stress. Environ Health Perspect, 122, 1271–8.
- Shaughnessy, D. T., Worth, L., Lawler, C. P., McAllister, K. A., Longley, M. J. & Copeland, W. C. 2010. Meeting report: identification of biomarkers for early detection of mitochondrial dysfunction. Mitochondrion, 10, 579–81.
- Shen, D., Dalton, T. P., Nebert, D. W. & Shertzer, H. G. 2005. Glutathione redox state regulates mitochondrial reactive oxygen production. J Biol Chem, 280, 25305–12.
-
Shen, Y., Ng, L. F., Low, N. P., Hagen, T., Gruber, J. & Inoue, T.
2016.
C. elegans miro-1 mutation reduces the amount of mitochondria and extends life span. PLoS One, 11, e0153233.
10.1371/journal.pone.0153233 Google Scholar
- Shim, J., Weatherly, L. M., Luc, R. H., Dorman, M. T., Neilson, A., Ng, R., Kim, C. H., Millard, P. J. & Gosse, J. A. 2016. Triclosan is a mitochondrial uncoupler in live zebrafish. J Appl Toxicol, 36, 1662–7.
- Sidoryk-Wegrzynowicz, M. & Aschner, M. 2013. Role of astrocytes in manganese mediated neurotoxicity. BMC Pharmacol Toxicol, 14, 23.
- Smela, M. E., Currier, S. S., Bailey, E. A. & Essigmann, J. M. 2001. The chemistry and biology of aflatoxin B(1): from mutational spectrometry to carcinogenesis. Carcinogenesis, 22, 535–45.
- Smith, K. R., Bruce, N., Balakrishnan, K., Adair-Rohani, H., Balmes, J., Chafe, Z., Dherani, M., Hosgood, H. D., Mehta, S., Pope, D., Rehfuess, E. & Grp, H. C. R. E. 2014. Millions dead: how do we know and what does it mean? Methods used in the comparative risk assessment of household air pollution. Annu Rev Public Health 35, 35, 185–206.
- Smith, R. L., De Vos, W. H., De Boer, R., Manders, E. M. & Van Der Spek, H. 2015. In vivo visualization and quantification of mitochondrial morphology in C. elegans . Methods Mol Biol, 1265, 367–77.
- Soberanes, S., Urich, D., Baker, C. M., Burgess, Z., Chiarella, S. E., Bell, E. L., Ghio, A. J., De Vizcaya-Ruiz, A., Liu, J., Ridge, K. M., Kamp, D. W., Chandel, N. S., Schumacker, P. T., Mutlu, G. M. & Budinger, G. R. 2009. Mitochondrial complex III-generated oxidants activate ASK1 and JNK to induce alveolar epithelial cell death following exposure to particulate matter air pollution. J Biol Chem, 284, 2176–86.
- Sobkowiak, R. & Lesicki, A. 2009. Genotoxicity of nicotine in cell culture of Caenorhabditis elegans evaluated by the comet assay. Drug Chem Toxicol, 32, 252–7.
- Soukas, A. A., Kane, E. A., Carr, C. E., Melo, J. A. & Ruvkun, G. 2009. Rictor/TORC2 regulates fat metabolism, feeding, growth, and life span in Caenorhabditis elegans . Genes Dev, 23, 496–511.
- Srere, P. 1969. [1]Citrate synthase:[EC 4.1. 3.7. Citrate oxaloacetate-lyase (CoA-acetylating)]. Methods Enzymol, 13, 3–11.
- Stapleton, P. A., Nichols, C. E., Yi, J., Mcbride, C. R., Minarchick, V. C., Shepherd, D. L., Hollander, J. M. & Nurkiewicz, T. R. 2015. Microvascular and mitochondrial dysfunction in the female F1 generation after gestational TiO2 nanoparticle exposure. Nanotoxicology, 9, 941–51.
- Steiner, S. R. & Philbert, M. A. 2011. Proteomic identification of carbonylated proteins in 1,3-dinitrobenzene neurotoxicity. Neurotoxicology, 32, 362–73.
- Stepanov, I. & Hecht, S. S. 2009. Mitochondrial DNA adducts in the lung and liver of F344 rats chronically treated with 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone and (S)-4-(methylnitrosamino)-1-(3-pyridyl)-1-butanol. Chem Res Toxicol, 22, 406–14.
- Stroustrup, N., Ulmschneider, B. E., Nash, Z. M., Lopez-Moyado, I. F., Apfeld, J. & Fontana, W. 2013. The Caenorhabditis elegans lifespan machine. Nat Methods, 10, 665–70.
- Suetomi, K., Mereiter, S., Mori, C., Takanami, T. & Higashitani, A. 2013. Caenorhabditis elegans ATR checkpoint kinase ATL-1 influences life span through mitochondrial maintenance. Mitochondrion, 13, 729–35.
- Sulston, J. E. & Horvitz, H. R. 1977. Post-embryonic cell lineages of the nematode, Caenorhabditis elegans . Dev Biol, 56, 110–56.
- Sulston, J. E., Schierenberg, E., White, J. G. & Thomson, J. N. 1983. The embryonic cell lineage of the nematode Caenorhabditis elegans . Dev Biol, 100, 64–119.
- Sundar Boyalla, S., Barbara Victor, M., Roemgens, A., Beyer, C. & Arnold, S. 2011. Sex- and brain region-specific role of cytochrome c oxidase in 1-methyl-4-phenylpyridinium-mediated astrocyte vulnerability. J Neurosci Res, 89, 2068–82.
- Swierczek, N. A., Giles, A. C., Rankin, C. H. & Kerr, R. A. 2011. High-throughput behavioral analysis in C. elegans . Nat Methods, 8, 592–8.
- Tabara, H., Grishok, A. & Mello, C. C. 1998. RNAi in C. elegans: soaking in the genome sequence. Science, 282, 430–1.
- Tannen, R. L. & Kunin, A. S. 1976. Effect of pH on ammonia production by renal mitochondria. Am J Physiol, 231, 1631–7.
- Tavernarakis, N., Wang, S. L., Dorovkov, M., Ryazanov, A. & Driscoll, M. 2000. Heritable and inducible genetic interference by double-stranded RNA encoded by transgenes. Nat Genet, 24, 180–3.
- Taylor, R. C., Berendzen, K. M. & Dillin, A. 2014. Systemic stress signalling: understanding the cell non-autonomous control of proteostasis. Nat Rev Mol Cell Biol, 15, 211–7.
- Tejeda-Benitez, L. & Olivero-Verbel, J. 2016. Caenorhabditis elegans, a biological model for research in toxicology. Rev Environ Contam Toxicol, 237, 1–35.
- Thompson, O., Edgley, M., Strasbourger, P., Flibotte, S., Ewing, B., Adair, R., Au, V., Chaudhry, I., Fernando, L., Hutter, H., Kieffer, A., Lau, J., Lee, N., Miller, A., Raymant, G., Shen, B., Shendure, J., Taylor, J., Turner, E. H., Hillier, L. W., Moerman, D. G. & Waterston, R. H. 2013. The million mutation project: a new approach to genetics in Caenorhabditis elegans . Genome Res, 23, 1749–62.
- Tian, Y., Garcia, G., Bian, Q., Steffen, K. K., Joe, L., Wolff, S., Meyer, B. J. & Dillin, A. 2016. Mitochondrial stress induces chromatin reorganization to promote longevity and UPR(mt). Cell, 165, 1197–208.
- Timmons, L. & Fire, A. 1998. Specific interference by ingested dsRNA. Nature, 395, 854.
-
Todt, C. E., Bailey, D. C., Pressley, A. S., Orfield, S. E., Denney, R. D., Snapp, I. B., Negga, R., Bailey, A. C., Montgomery, K. M., Traynor, W. L. & Fitsanakis, V. A.
2016. Acute exposure to a Mn/Zn ethylene-bis-dithiocarbamate fungicide leads to mitochondrial dysfunction and increased reactive oxygen species production in Caenorhabditis elegans
. Neurotoxicology, 57, 112–20.
10.1016/j.neuro.2016.09.011 Google Scholar
- Tremp, J., Mattrel, P., Fingler, S. & Giger, W. 1993. Phenols and nitrophenols as tropospheric pollutants: emissions from automobile exhausts and phase-transfer in the atmosphere. Water Air Soil Pollut, 68, 113–23.
- Trounce, I. A., Kim, Y. L., Jun, A. S. & Wallace, D. C. 1996. Assessment of mitochondrial oxidative phosphorylation in patient muscle biopsies, lymphoblasts, and transmitochondrial cell lines. Methods Enzymol, 264, 484–509.
- Tsang, W. Y. & Lemire, B. D. 2002. Mitochondrial genome content is regulated during nematode development. Biochem Biophys Res Commun, 291, 8–16.
- Tsang, W. Y. & Lemire, B. D. 2003. The role of mitochondria in the life of the nematode, Caenorhabditis elegans . Biochim Biophys Acta, 1638, 91–105.
- Tsang, W. Y., Sayles, L. C., Grad, L. I., Pilgrim, D. B. & Lemire, B. D. 2001. Mitochondrial respiratory chain deficiency in Caenorhabditis elegans results in developmental arrest and increased life span. J Biol Chem, 276, 32240–6.
- Tulah, A. S. & Birch-Machin, M. A. 2013. Stressed out mitochondria: the role of mitochondria in ageing and cancer focussing on strategies and opportunities in human skin. Mitochondrion, 13, 444–53.
-
Valastyan, J. S., Termine, D. J. & Lindquist, S.
2014. Splice isoform and pharmacological studies reveal that sterol depletion relocalizes alpha-synuclein and enhances its toxicity. Proc Natl Acad Sci U S A, 111, 3014–9.
10.1073/pnas.1324209111 Google Scholar
- Van Houten, B., Hunter, S. E. & Meyer, J. N. 2016. Mitochondrial DNA damage induced autophagy, cell death, and disease. Front Biosci (Landmark Ed), 21, 42–54.
- Vanduyn, N. & Nass, R. 2014. The putative multidrug resistance protein MRP-7 inhibits methylmercury-associated animal toxicity and dopaminergic neurodegeneration in Caenorhabditis elegans . J Neurochem, 128, 962–74.
- Vanduyn, N., Settivari, R., Levora, J., Zhou, S., Unrine, J. & Nass, R. 2013. The metal transporter SMF-3/DMT-1 mediates aluminum-induced dopamine neuron degeneration. J Neurochem, 124, 147–57.
-
Vanfleteren, J. R. & De Vreese, A.
1996. Rate of aerobic metabolism and superoxide production rate potential in the nematode Caenorhabditis elegans
. J Exp Zool, 274, 93–100.
10.1002/(SICI)1097-010X(19960201)274:2<93::AID-JEZ2>3.0.CO;2-8 CAS PubMed Web of Science® Google Scholar
- Varga, Z. V., Ferdinandy, P., Liaudet, L. & Pacher, P. 2015. Drug-induced mitochondrial dysfunction and cardiotoxicity. Am J Physiol Heart Circ Physiol, 309, H1453–67.
- Vendelin, M., Beraud, N., Guerrero, K., Andrienko, T., Kuznetsov, A. V., Olivares, J., Kay, L. & Saks, V. A. 2005. Mitochondrial regular arrangement in muscle cells: a “crystal-like” pattern. Am J Physiol Cell Physiol, 288, C757–67.
- Ventura, N., Rea, S., Henderson, S. T., Condo, I., Johnson, T. E. & Testi, R. 2005. Reduced expression of frataxin extends the lifespan of Caenorhabditis elegans . Aging Cell, 4, 109–12.
- Villeneuve, D. L. 2015. In response: the path forward for the adverse outcome pathway framework—a regulatory perspective. Environ Toxicol Chem, 34, 1938–40.
- Villeneuve, D. L., Crump, D., Garcia-Reyero, N., Hecker, M., Hutchinson, T. H., Lalone, C. A., Landesmann, B., Lettieri, T., Munn, S., Nepelska, M., Ottinger, M. A., Vergauwen, L. & Whelan, M. 2014. Adverse outcome pathway (AOP) development I: strategies and principles. Toxicol Sci, 142, 312–20.
- Voloboueva, L. A., Suh, S. W., Swanson, R. A. & Giffard, R. G. 2007. Inhibition of mitochondrial function in astrocytes: implications for neuroprotection. J Neurochem, 102, 1383–94.
- Wadsworth, W. G. & Riddle, D. L. 1989. Developmental regulation of energy metabolism in Caenorhabditis elegans . Dev Biol, 132, 167–73.
- Wallace, D. C. 2005. A mitochondrial paradigm of metabolic and degenerative diseases, aging, and cancer: a dawn for evolutionary medicine. Annu Rev Genet, 39, 359–407.
-
Wang, D., Liu, P., Yang, Y. & Shen, L.
2010. Formation of a combined Ca/Cd toxicity on lifespan of nematode Caenorhabditis elegans
. Ecotoxicol Environ Saf, 73, 1221–30.
10.1016/j.ecoenv.2010.05.002 Google Scholar
-
Wang, D. & Xing, X.
2010. Pre-treatment with mild UV irradiation suppresses reproductive toxicity induced by subsequent cadmium exposure in nematodes. Ecotoxicol Environ Saf, 73, 423–9.
10.1016/j.ecoenv.2009.12.014 Google Scholar
-
Watanabe, M., Mitani, N., Ishii, N. & Miki, K.
2005. A mutation in a cuticle collagen causes hypersensitivity to the endocrine disrupting chemical, bisphenol A, in Caenorhabditis elegans
. Mutat Res Fundam Mol Mech Mutagen, 570, 71–80.
10.1016/j.mrfmmm.2004.10.005 Google Scholar
- Weatherly, L. M., Shim, J., Hashmi, H. N., Kennedy, R. H., Hess, S. T. & Gosse, J. A. 2016. Antimicrobial agent triclosan is a proton ionophore uncoupler of mitochondria in living rat and human mast cells and in primary human keratinocytes. J Appl Toxicol, 36, 777–89.
- White, J. G., Southgate, E., Thomson, J. N. & Brenner, S. 1986. The structure of the nervous system of the nematode Caenorhabditis elegans . Philos Trans R Soc Lond B Biol Sci, 314, 1–340.
- Williams, P. L. & Dusenbery, D. B. 1988. Using the nematode Caenorhabditis elegans to predict mammalian acute lethality to metallic salts. Toxicol Ind Health, 4, 469–78.
- Wills, L. P., Beeson, G. C., Hoover, D. B., Schnellmann, R. G. & Beeson, C. C. 2015. Assessment of ToxCast phase II for mitochondrial liabilities using a high-throughput respirometric assay. Toxicol Sci, 146, 226–34.
- Winston, W. M., Molodowitch, C. & Hunter, C. P. 2002. Systemic RNAi in C. elegans requires the putative transmembrane protein SID-1. Science, 295, 2456–9.
- Wirtz, S. & Schuelke, M. 2011. Region-specific expression of mitochondrial complex I genes during murine brain development. PLoS One, 6, e18897.
- Wolff, N. A., Garrick, L. M., Zhao, L., Garrick, M. D. & Thevenod, F. 2014a. Mitochondria represent another locale for the divalent metal transporter 1 (DMT1). Channels (Austin), 8, 458–66.
-
Wolff, N. A., Ghio, A. J., Garrick, L. M., Garrick, M. D., Zhao, L., Fenton, R. A. & Thevenod, F.
2014b. Evidence for mitochondrial localization of divalent metal transporter 1 (DMT1). FASEB J, 28, 2134–45.
10.1096/fj.13-240564 Google Scholar
- Wolff, S. & Dillin, A. 2006. The trifecta of aging in Caenorhabditis elegans . Exp Gerontol, 41, 894–903.
- Wood, C. E., Hester, S. D., Chorley, B. N., Carswell, G., George, M. H., Ward, W., Vallanat, B., Ren, H. Z., Fisher, A., Lake, A. D., Okerberg, C. V., Gaillard, E. T., Moore, T. M. & Deangelo, A. B. 2015. Latent carcinogenicity of early-life exposure to dichloroacetic acid in mice. Carcinogenesis, 36, 782–91.
- Wu, Q., He, K., Liu, P., Li, Y. & Wang, D. 2011. Association of oxidative stress with the formation of reproductive toxicity from mercury exposure on hermaphrodite nematode Caenorhabditis elegans . Environ Toxicol Pharmacol, 32, 175–84.
- Xia, T., Korge, P., Weiss, J. N., Li, N., Venkatesen, M. I., Sioutas, C. & Nel, A. 2004. Quinones and aromatic chemical compounds in particulate matter induce mitochondrial dysfunction: implications for ultrafine particle toxicity. Environ Health Perspect, 112, 1347–58.
- Xia, T., Kovochich, M. & Nel, A. E. 2007. Impairment of mitochondrial function by particulate matter (PM) and their toxic components: implications for PM-induced cardiovascular and lung disease. Front Biosci, 12, 1238–46.
- Yamada, K. & Fukushima, T. 1993. Mechanism of cytotoxicity of paraquat. II. Organ specificity of paraquat-stimulated lipid peroxidation in the inner membrane of mitochondria. Exp Toxicol Pathol, 45, 375–80.
- Yamada, K. & Watanabe, M. 2002. Cytodifferentiation of Bergmann glia and its relationship with Purkinje cells. Anat Sci Int, 77, 94–108.
- Yanase, S. & Ishii, N. 2008. Hyperoxia exposure induced hormesis decreases mitochondrial superoxide radical levels via Ins/IGF-1 signaling pathway in a long-lived age-1 mutant of Caenorhabditis elegans . J Radiat Res, 49, 211–8.
- Yang, W. & Hekimi, S. 2010. Two modes of mitochondrial dysfunction lead independently to lifespan extension in Caenorhabditis elegans . Aging Cell, 9, 433–47.
- Ye, X., Linton, J. M., Schork, N. J., Buck, L. B. & Petrascheck, M. 2014. A pharmacological network for lifespan extension in Caenorhabditis elegans . Aging Cell, 13, 206–15.
- Zeitoun-Ghandour, S., Leszczyszyn, O. I., Blindauer, C. A., Geier, F. M., Bundy, J. G. & Stürzenbaum, S. R. 2011. C. elegans metallothioneins: response to and defence against ROS toxicity. Mol Biosyst, 7, 2397–406.
- Zelnick, S. D., Mattie, D. R. & Stepaniak, P. C. 2003. Occupational exposure to hydrazines: treatment of acute central nervous system toxicity. Aviat Space Environ Med, 74, 1285–91.
- Zhang, Y., Zou, X., Ding, Y., Wang, H., Wu, X. & Liang, B. 2013. Comparative genomics and functional study of lipid metabolic genes in Caenorhabditis elegans . BMC Genomics, 14, 1.
- Zhao, Y., Yang, J. & Wang, D. 2016. A MicroRNA-mediated insulin signaling pathway regulates the toxicity of multi-walled carbon nanotubes in nematode Caenorhabditis elegans . Sci Rep, 6, 23234.
- Zhou, S., Wang, Z. & Klaunig, J. E. 2013. Caenorhabditis elegans neuron degeneration and mitochondrial suppression caused by selected environmental chemicals. Int J Biochem Mol Biol, 4, 191–200.
- Zhu, H., Li, Y. & Trush, M. A. 1995. Characterization of benzo[a]pyrene quinone-induced toxicity to primary cultured bone marrow stromal cells from DBA/2 mice: potential role of mitochondrial dysfunction. Toxicol Appl Pharmacol, 130, 108–20.
- Zuryn, S., Kuang, J. & Ebert, P. 2008. Mitochondrial modulation of phosphine toxicity and resistance in Caenorhabditis elegans . Toxicol Sci, 102, 179–86.