Table of Contents

Part I : Introduction
CHAPTER 2
Fundamentals of Protein Structure (Pages: 15-39)
Eric D. Scheeff Jody Lynn Fink
CHAPTER 3
Fundamentals of DNA and RNA Structure (Pages: 41-73)
Stephen Neidle Bohdan Schneider Helen M. Berman
CHAPTER 5
Macromolecular Structure Determination by NMR Spectroscopy (Pages: 89-113)
John L. Markley Eldon L. Ulrich William M. Westler Brian F. Volkman
CHAPTER 6
Electron Microscopy (Pages: 115-133)
Niels Volkmann Dorit Hanein
Part II : Data Representation and Databases
CHAPTER 10
The Nucleic Acid Database (Pages: 199-216)
Helen M. Berman John D. Westbrook Zukang Feng Lisa Iype Bohdan Schneider Christine Zardecki
CHAPTER 11
Other Structure-Based Databases (Pages: 217-236)
Helge Weissig Philip E. Bourne
Part III : Comparative Features
CHAPTER 13
The Cath Domain Structure Database (Pages: 249-271)
Christine A. Orengo Frances M. G. Pearl Janet M. Thornton
CHAPTER 16
Structure Comparison and Alignment (Pages: 321-337)
Philip E. Bourne Ilya N. Shindyalov
Part IV : Structure and Functional Assignment
CHAPTER 17
Secondary Structure Assignment (Pages: 339-363)
Claus A. F. Andersen Burkhard Rost
CHAPTER 19
Inferring Protein Function from Structure (Pages: 387-407)
Gail J. Bartlett Todd Annabel E. Janet M. Thornton
Part V : Protein Interactions
CHAPTER 21
Electrostatic Interactions (Pages: 427-440)
Nathan A. Baker J. Andrew McCammon
Part VI : Proteins as Drug Targets
CHAPTER 22
Principles and Methods of Docking and Ligand Design (Pages: 441-476)
Jennifer Krumrine Florian Raubacher Natasja Brooijmans Irwin Kuntz
CHAPTER 23
Structural Bioinformatics in Drug Discovery (Pages: 477-497)
Eric B. Fauman Andrew L. Hopkins Colin R. Groom
Part VII : Structure Prediction
CHAPTER 25
Homology Modeling (Pages: 509-523)
Elmar Krieger Sander B. Nabuurs Gert Vriend
CHAPTER 27
Ab Initio Methods (Pages: 547-557)
Dylan Chivian Timothy Robertson Richard Bonneau David Baker
Part VIII : The Future
CHAPTER 29
Structural Genomics (Pages: 589-612)
Stephen K. Burley Jeffrey B. Bonanno