Solvatochromic shift of the π → π* transition in all-trans, cis-13, cis-11, cis-9, and cis-7 retinal isomers induced by water and methanol
Corresponding Author
Alejandro López-Castillo
Departamento de Química, Universidade Federal de São Carlos, Caixa Postal 676, São Carlos, SP, 13560-970, Brazil
Departamento de Química, Universidade Federal de São Carlos, Caixa Postal 676, São Carlos, SP, 13560-970, BrazilSearch for more papers by this authorAntonio Carlos Borin
Instituto de Química, Universidade de São Paulo, 05508-900, São Paulo, SP, Brazil
Search for more papers by this authorCorresponding Author
Alejandro López-Castillo
Departamento de Química, Universidade Federal de São Carlos, Caixa Postal 676, São Carlos, SP, 13560-970, Brazil
Departamento de Química, Universidade Federal de São Carlos, Caixa Postal 676, São Carlos, SP, 13560-970, BrazilSearch for more papers by this authorAntonio Carlos Borin
Instituto de Química, Universidade de São Paulo, 05508-900, São Paulo, SP, Brazil
Search for more papers by this authorAbstract
The solvatochromic shift of the lowest singlet π → π* electronic transition in the all-trans, cis-13, cis-11, cis-9, and cis-7 retinal isomers were computed under the influence of water, methanol, and benzene solvents. Excitation energies were calculated in gas phase and in solution. The calculations in solution were performed considering the sequential Monte Carlo (MC) /Quantum Mechanical approach. The MC simulations were performed considering the full retinal isomer molecules and 900 water molecules, 900 methanol, or 400 benzene ones. The OPLS/AA parametrization was chosen for retinal, methanol, and benzene molecules and the SPC model was used for water one. From the MC calculations 100 independent configurations were selected, with 100 solvent molecules in thermodynamical equilibrium at T = 298.15 K. Average point-charges were obtained from those independent configurations for water, methanol, and benzene solvent. TDDFT and CASSCF//CASPT2 methodologies were used to compute the vertical excitation energy of the retinal isomers in different environment. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2010
Supporting Information
Additional supporting information may be found in the online version of this article.
Filename | Description |
---|---|
QUA_22622_sm_suppinfo.doc495.5 KB | Supporting Information |
Please note: The publisher is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.
References
- 1 Wald, G. Nature 1968, 219, 800.
- 2 Wald, G. Science 1968, 162, 230.
- 3 Hubbard, R. J Biol Chem 1966, 241, 1814.
- 4 Ganapathy, S.; Liu, R. S. H. J Am Chem Soc 1992, 114, 3459.
- 5 Jurkowitz, L.; Loeb, J. N.; Brown, P. K.; Wald G. Nature 1959, 184, 614.
- 6 Yamaguchi S.; Hamaguchi, H. J Mol Struct 1996, 379, 87.
- 7 Viguera, A.-R.; Villa, M. J.; Goñi, F. M. J Biol Chem 1989, 265, 2527.
- 8 Garavelli, M.; Celani, P.; Bernardi, F.; Robb, M. A.; Olivucci, O. J Am Chem Soc 1997, 119, 6891.
- 9 González-Luque, R.; Garavelli, M.; Bernardi, F.; Merchán, M.; Robb, M. A.; Olivucci, M. Proc Natl Acad Sci USA 2000, 97, 9379.
- 10 Szymczak, J. J.; Barbatti, M.; Lischka, H. J Phys Chem A 2009, 113, 11907.
- 11 Andruniow, T.; Ferré, N.; Olivucci, M. Proc Nat Ac Sc USA 2004, 101, 17908.
- 12 Zaari, R. R.; Wong, S. Y. Y. Chem Phys Lett 2009, 469, 224.
- 13 Cembran, A.; González-Luque, R.; Serrano-Andrés, L.; Merchán, M.; Garavelli, M. Theor Chem Acc 2007, 118, 173.
- 14 Santoro, F.; Lami, A.; Olivucci, M. Theor Chem Acc 2007, 117, 1061.
- 15 Send, R.; Sundholm, D. J Phys Chem A 2007, 111, 8766.
- 16 Wanko, M.; Hoffmann, M.; Frauenheim, T.; Elstner, M. J. Computer-aided Mol Des 2006, 20, 511.
- 17 Olivucci, M.; Lami, A.; Santoro, F. Ang Chem Int Ed 2005, 44, 5118.
- 18 Wanko, M.; Hoffmann, M.; Strodel, P.; Koslowski, A.; Thiel, W.; Neese, F.; Frauenheim, T.; Elstner, M. J Phys Chem B 2005, 109, 3606.
- 19 Cembran, A.; González-Luque, R.; Altoe, P.; Merchán, M.; Bernardi, F.; Olivucci, M.; Garavelli, M. J Phys Chem A 2005, 109, 6597.
- 20 Cembran, A.; Bernardi, F.; Olivucci, M.; Garavelli, M. Proc Natl Acad Sci USA 2005, 102, 6255.
- 21 De Vico, L.; Garavelli, M.; Bernardi, F.; Olivucci, M. J Am Chem Soc 2005, 127, 2433.
- 22 Cembran, A.; Bernardi, F.; Olivucci, M.; Garavelli, M. J Am Chem Soc 2004, 126, 16018.
- 23 Ferré, N.; Cembran, A.; Garavelli, M.; Olivucci, M. Theor Chem Acc 2004, 112, 335.
- 24 Migani, A.; Sinicropi, A.; Ferré, N.; Cembran, A.; Garavelli, M.; Olivucci, M. Faraday Discus 2004, 127, 179.
- 25 Weingart, O.; Migani, A.; Olivucci, M.; Robb, M. A.; Buss, V.; Hunt, P. J Phys Chem A 2004, 108, 4685.
- 26 Fantacci, S.; Migani, A.; Olivucci, M. J Phys Chem A 2004, 108, 1208.
- 27 Lee, H. M.; Kim, J.; Kim, C.-J.; Kim, K. S. J Chem Phys 2002, 116, 6549.
- 28 Savedra, R. M. L.; Pinto, M. F. S.; Trsic, M. J Chem Phys 2006, 125, 144901.
- 29 Allen, M. P.; Tildesley, D. J. Computer Simulation of Liquids; Oxford University Press: Oxford, UK, 1987.
- 30 Coutinho, K.; Canuto, S. DICE (version 2.8). A Monte Carlo Program for Molecular Liquid Simulation; University of São Paulo: São Paulo, SP, Brazil, 2000.
- 31 Coutinho, K.; Canuto, S. J Chem Phys 2002, 117, 1692.
- 32 Lee, C.; Yang, W.; Parr, R. G. Phys Rev B 1988, 37, 785.
- 33 Schaefer, A.; Huber, C.; Ahlrichs, R. J Chem Phys 1994, 100, 5829.
- 34 Breneman, C. M.; Wiberg, K. B. J Comput Chem 1990, 11, 361.
- 35 Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; Scuseria, G. E.; Robb, M. A.; Cheeseman, J. R.; Montgomery, J. A., Jr.; Vreven, T.; Kudin, K. N.; Burant, J. C.; Millam, J. M.; Iyengar, S. S.; Tomasi, J.; Barone, V.; Mennucci, B.; Cossi, M.; Scalmani, G.; Rega, N.; Petersson, G. A.; Nakatsuji, H.; Hada, M.; Ehara, M.; Toyota, K.; Fukuda, R.; Hasegawa, J.; Ishida, M.; Nakajima, T.; Honda, Y.; Kitao, O.; Nakai, H.; Klene, M.; Li, X.; Knox, J. E.; Hratchian, H. P.; Cross, J. B.; Bakken, V.; Adamo, C.; Jaramillo, J.; Gomperts, R.; Stratmann, R. E.; Yazyev, O.; Austin, A. J.; Cammi, R.; Pomelli, C.; Ochterski, J. W.; Ayala, P. Y.; Morokuma, K.; Voth, G. A.; Salvador, P.; Dannenberg, J. J.; Zakrzewski, V. G.; Dapprich, S.; Daniels, A. D.; Strain, M. C.; Farkas, O.; Malick, D. K.; Rabuck, A. D.; Raghavachari, K.; Foresman, J. B.; Ortiz, J. V.; Cui, Q.; Baboul, A. G.; Clifford, S.; Cioslowski, J.; Stefanov, B. B.; Liu, G.; Liashenko, A.; Piskorz, P.; Komaromi, I.; Martin, R. L.; Fox, D. J.; Keith, T.; Al-Laham, M. A.; Peng, C. Y.; Nanayakkara, A.; Challacombe, M.; Gill, P. M. W.; Johnson, B.; Chen, W.; Wong, M. W.; González, C.; Pople, J. A. GAUSSIAN 03, Revision C.02; Gaussian Inc.: Wallingford CT, 2004.
- 36 Metropolis, N.; Rosenbluth, A. W.; Rosenbluth, M. N.; Teller, A. W.; Teller, E. J Chem Phys 1953, 21, 1087.
- 37 Canuto, S.; Coutinho, K.; Trzesniak, D. Adv Quant Chem 2002, 41, 161.
- 38 Jorgensen, W. J.; Maxwell, D. S.; Tirado-Rives, J. J Am Chem Soc 1996, 118, 11225.
- 39 Berendsen, H. J. C.; Postma, J. P. M.; van Gunsteren, W. F.; Hermans, J. In Intermolecular Forces; B. Pullman, Ed.; Reidel: Dordrecht, 1981; p 331.
- 40 Coutinho, K.; Georg, H. C.; Fonseca, T.; Ludwig, V.; Canuto, S. Chem Phys Lett 2007, 437, 148.
- 41 Ludwig, V.; Coutinho, K.; Borin, A. C.; Canuto, S. Int J Quant Chem 2003, 95, 572.
- 42 Borin, A. C.; Serrano-Andrés, L.; Ludwig, V.; Coutinho, K.; Canuto, S. Int J Quant Chem 2006, 106, 2564.
- 43 Roos, B. O. In Advances in Chemical Physics. Ab Initio Methods in Quantum Chemistry; K. P. Lawley, Ed.; John Wiley: Chichester, UK, 1987; Vol. II, p 399.
- 44 Andersson, K.; Malmqvist, P.-Å.; Roos, B. O.; Sadlej, A. J.; Wolinski, W. J Phys Chem 1990, 94, 5483.
- 45 Andersson, K.; Malmqvist, P.-Å.; Roos, B. O. J Chem Phys 1992, 96, 1218.
- 46 Karlström, G.; Lindh, R.; Malmqvist, P.-Å.; Roos, B. O.; Ryde, U.; Veryazov, V.; Widmark, P.-O.; Cossi, M.; Schimmelpfennig, B.; Neogrady, P.; Seijo, L. Comput Mater Sci 2003, 28, 222.
- 47 Widmark, P.-O.; Malmqvist, P.-Å.; Roos, B. O. Theor Chim Acta 1990, 77, 291.
- 48 Ghigo, G.; Roos, B. O.; Malmqvist, P.-Å. Chem Phys Lett 2004, 396, 142.
- 49 Forsberg N.; Malmqvist, P.-Å. Chem Phys Lett 1997, 274, 196.
- 50
Merchán, M.;
Serrano-Andrés, L. In
Computational Photochemistry;
M. Olivucci, Ed.;
Elsevier:
Amsterdam, The Netherlands,
2005; p
35.
10.1016/S1380-7323(05)80019-6 Google Scholar
- 51 Serrano-Andrés, L.; Merchán, M. In Photostability and Photoreactivity in Biomolecules: Quantum Chemistry of Nucleic Acid Base Monomers and Dimers; J. Leszczynski; M. Shukla, Eds.; Springer: New York, USA, 2007; p 435.
- 52 Serrano-Andrés, L.; Merchán, M.; Borin, A. C. J Am Chem Soc 2008, 130, 2473.
- 53 Serrano-Andrés, L.; Merchán, M.; Borin, A. C. Proc Natl Acad Sci USA 2006, 103, 8691.
- 54 Hohenberg, P.; Kohn, W. Phys Rev 1964, 136, 864.
- 55 Runge, E.; Gross, E. K. U. Phys Rev Lett 1984, 52, 997.
- 56 Strambi, A.; Coto, P. B.; Frutos, L. M.; Ferré, N.; Olivucci, M. J Am Chem Soc 2008, 130, 3382.
- 57 Frutos, L. M.; Andruniów, T.; Santoro, F.; Olivucci, M. Proc Natl Acad Sci USA 2007, 104, 7764.
- 58
Michl, J. In
Computational Photochemistry;
M. Olivucci, Ed.;
Elsevier:
Amsterdam, The Netherlands,
2005; p
ix.
10.1016/S1380-7323(05)80015-9 Google Scholar
- 59 López-Castillo, A.; Ornellas, F. R. Phys Rev A 1995, 51, 381.