Volume 106, Issue 13 pp. 2581-2586

DFT calculation of core-electron binding energies of pyrimidine and purine bases

Yuji Takahata

Corresponding Author

Yuji Takahata

Department of Chemistry, State University of Campinas, P. O. Box 6154, 13084-862 Campinas, SP, Brazil

Department of Chemistry, State University of Campinas, P. O. Box 6154, 13084-862 Campinas, SP, BrazilSearch for more papers by this author
Andre K. Okamoto

Andre K. Okamoto

Department of Chemistry, State University of Campinas, P. O. Box 6154, 13084-862 Campinas, SP, Brazil

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Delano P. Chong

Delano P. Chong

Department of Chemistry, 2036 Main Mall, University of British Columbia, Vancouver, BC, Canada V6T 1Z1

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First published: 28 March 2006
Citations: 27

Abstract

We calculated the accurate core-electron binding energies (CEBEs) of pyrimidine and purine bases in their isolated forms in the gas phase, i.e., uracil (U), thymine (T), cytosine (C), adenine (A), and guanine (G), using density functional theory (DFT) with the scheme ΔE (PW86-PW91)/TZP//HF/6-31G*. The relative magnitude of calculated CEBEs of the same type of atom in the gas phase pyrimidine and purine bases reflect its chemical environment. Comparison between the calculated CEBEs of the bases in the gas phase and observed CEBEs of the same molecules in the solid state permitted estimation of the approximate work functions (WD). Using the approximate WD, it was possible to calculate approximate CEBEs of the DNA bases in the solid state. The average absolute deviation from experiment was 0.37 eV. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2006

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