In-Bead Screening of Hydroxamic Acids for the Identification of HDAC Inhibitors
Dr. Katrine Qvortrup
Department of Chemistry, Technical University of Denmark, Kgs. Lyngby, 2800 Denmark
Search for more papers by this authorCorresponding Author
Prof. Dr. Thomas E. Nielsen
Department of Chemistry, Technical University of Denmark, Kgs. Lyngby, 2800 Denmark
Singapore Centre on Environmental Life Sciences Engineering, Nanyang Technological University, 637551 Singapore, Singapore
Search for more papers by this authorDr. Katrine Qvortrup
Department of Chemistry, Technical University of Denmark, Kgs. Lyngby, 2800 Denmark
Search for more papers by this authorCorresponding Author
Prof. Dr. Thomas E. Nielsen
Department of Chemistry, Technical University of Denmark, Kgs. Lyngby, 2800 Denmark
Singapore Centre on Environmental Life Sciences Engineering, Nanyang Technological University, 637551 Singapore, Singapore
Search for more papers by this authorAbstract
A one bead–one compound screening format is presented. Following solid-phase synthesis on a photolabile linker, library compounds were readily released and screened inside polymer beads. The release of screening compounds was readily controlled by varying photolysis time and light intensity. Dose-response experiments were carried out to effectively distinguish high- and low-affinity ligands. A library containing 55 800 compounds was synthesized and screened in a fluorometric assay, thereby identifying potent HDAC inhibitors with IC50 values in the nanomolar range.
Supporting Information
As a service to our authors and readers, this journal provides supporting information supplied by the authors. Such materials are peer reviewed and may be re-organized for online delivery, but are not copy-edited or typeset. Technical support issues arising from supporting information (other than missing files) should be addressed to the authors.
Filename | Description |
---|---|
ange201511308-sup-0001-misc_information.pdf11.4 MB | Supplementary |
Please note: The publisher is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.
References
- 1
- 1aK. S. Lam, S. E. Salmon, E. M. Hersh, V. J. Hruby, W. M. Kazmierski, R. J. Knapp, Nature 1991, 354, 82–84;
- 1bR. A. Houghten, C. Pinilla, S. E. Blondelle, J. R. Appel, C. T. Dooley, J. H. Cuervo, Nature 1991, 354, 84–86.
- 2
- 2aJ. C. Kappel, Y. C. Fan, K. S. Lam, J. Comb. Chem. 2008, 10, 333–342;
- 2bR. Sambasivan, w. Zheng, S. J. Burya, B. V. Popp, C. Turro, C. Clementi, Z. T. Ball, Chem. Sci. 2014, 5, 1401–1407;
- 2cL. Ye, T. Dickerson, H. Kaur, Y. K. Takada, M. Fujita, R. Liu, J. M. Knapp, K. S. Lam, N. E. Schore, M. J. Kurth, Y. Takada, Bioorg. Med. Chem. Lett. 2013, 23, 340–345;
- 2dY. Zhang, S. Zhou, A.-S. Wavreille, J. DeWille, D. Pei, J. Comb. Chem. 2008, 10, 247–255;
- 2eH.-S. Lim, C. T. Archer, T. Kodadek, J. Am. Chem. Soc. 2007, 129, 7750–7751;
- 2fA. Song, J. Zhang, C. B. Lebrilla, K. S. Lam, J. Am. Chem. Soc. 2003, 125, 6180–6188;
- 2gM. Meldal, Biopolymers 2002, 66, 93–100;
- 2hE. M. V. Johansson, J. Dubois, T. Darbre, J.-L. Reymond, Bioorg. Med. Chem. 2010, 18, 6589–6597;
- 2iW. Lian, P. Upadhyaya, C. A. Rhodes, Y. Liu, D. Pei, J. Am. Chem. Soc. 2013, 135, 11990–11995;
- 2jJ. M. Astle, L. S. Simpson, Y. Huang, M. M. Reddy, R. Wilson, S. Connell, J. Wilson, T. Kodadek, Chem. Biol. 2010, 17, 38–45;
- 2kM. Oh, J. H. Lee, W. Wang, H. S. Lee, W. S. Lee, C. Burlak, W. Im, Q. Q. Hoang, H.-S. Lim, Proc. Natl. Acad. Sci. USA 2014, 111, 11007–11012.
- 3
- 3aM. Hintersteiner, C. Buehler, M. Auer, ChemPhysChem 2012, 13, 3472–3480;
- 3bM. M. Marani, M. C. M. Ceron, S. L. Giudicessi, E. de Oliveira, S. Coté, R. Erra-Balsells, F. Albericio, O. Cascone, S. A. Camperi, J. Comb. Chem. 2009, 11, 146–150;
- 3cS. Dixon, L. Robins, R. A. Elling, R. Liu, K. S. Lam, D. K. Wilson, M. J. Kurth, Bioorg. Med. Chem. Lett. 2005, 15, 2938–2942.
- 4
- 4aN. Maillard, T. Darbre, J. L. Reymond, J. Comb. Chem. 2009, 11, 667–675.
- 5
- 5aG. Upert, C. A. Merten, H. Wennemers, Chem. Commun. 2010, 46, 2209–2211;
- 5bA. J. You, R. J. Jackman, G. M. Whitesides, S. L. Schreiber, Chem. Biol. 1997, 4, 969–975;
- 5cL. A. Walling, N. R. Peters, E. J. Horn, R. W. King, J. Cell. Biochem. 2001, 84, 7–12.
- 6Meldal and co-workers have shown that PEGA resin allows for the access of large biomolecules, ranging from 30–70 kDa: F. I. Auzanneau, M. Meldal, K. Bock, J. Pept. Sci. 1995, 1, 31–44.
- 7
- 7aS. Minucci, P. G. Pelicci, Nat. Rev. Cancer 2006, 6, 38–51;
- 7bJ. E. Bradner, N. West, M. L. Grachan, E. F. Greenberg, S. J. Haggarty, T. Warnow, R. Mazitschek, Nat. Chem. Biol. 2010, 6, 238–243.
- 8
- 8aM. J. Miller, Chem. Rev. 1989, 89, 1563–1579;
- 8bW. Tang, T. Luo, E. F. Greenberg, J. E. Bradner, S. L. Schreiber, Bioorg. Med. Chem. Lett. 2011, 21, 2601–2605;
- 8cC. D. Floyd, C. N. Lewis, S. R. Patel, M. Whittaker, Tetrahedron Lett. 1996, 37, 8045–8048;
- 8dU. Bauer, W. B. Ho, A. M. P. Koskinen, Tetrahedron Lett. 1997, 38, 7233–7236;
- 8eL. S. Richter, M. C. Desai, Tetrahedron Lett. 1997, 38, 321–322;
- 8fS. L. Mellor, C. McGuire, W. C. Chan, Tetrahedron Lett. 1997, 38, 3311–3314;
- 8gE. Thouin, W. D. Lubell, Tetrahedron Lett. 2000, 41, 457–460;
- 8hA. Golebiowski, S. Klopfenstein, Tetrahedron Lett. 1998, 39, 3397–3400;
- 8iW. Zhang, L. Zhang, X. Li, J. A. Weigel, S. E. Hall, J. P. Mayer, J. Comb. Chem. 2001, 3, 151–153;
- 8jN. J. Ede, I. W. James, B. M. Krywult, R. M. Griffiths, S. N. Eagle, B. Gubbins, J. A. Leitch, W. R. Sampson, A. M. Bray, Lett. Pept. Sci. 1999, 6, 157–163;
- 8kS. L. Mellor, W. C. Chan, Chem. Commun. 1997, 2005–2006;
- 8lK. Ngu, D. V. Patel, J. Org. Chem. 1997, 62, 7088–7089.
- 9The 4,5-dialkoxy-2-nitrobenzyl group was first incorporated in photolabile linkers by Greenberg and Holmes:
- 9aD. J. Yoo, M. M. Greenberg, J. Org. Chem. 1995, 60, 3358–3364;
- 9bC. P. Holmes, D. G. Jones, J. Org. Chem. 1995, 60, 2318–2319. Since then, related linkers have been described for the immobilization of various functional groups:
- 9cC. G. Bochet, J. Chem. Soc. Perkin Trans. 1 2002, 125–142.
- 10P. A. Marks, R. Breslow, Nat. Biotechnol. 2007, 25, 84–90.
- 11M. Paris, M. Porcelloni, M. Binaschi, D. Fattori, J. Med. Chem. 2008, 51, 1505–1529.
This is the
German version
of Angewandte Chemie.
Note for articles published since 1962:
Do not cite this version alone.
Take me to the International Edition version with citable page numbers, DOI, and citation export.
We apologize for the inconvenience.