Optimized Cluster‐Enabled HMMER Searches - Grid Computing for Bioinformatics and Computational Biology - Wiley Online Library

Optimized Cluster-Enabled HMMER Searches

John Paul Walters,

John Paul Walters

Institute for Scientific Computing, Wayne State University, Detroit, Michigan, USA

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Joseph Landman,

Joseph Landman

Scalable Informatics LLC, Canton, Michigan, USA

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Vipin Chaudhary,

Vipin Chaudhary

Department of Computer Science and Engineering, The State University of New York, Buffalo, New York, USA

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John Paul Walters,

John Paul Walters

Institute for Scientific Computing, Wayne State University, Detroit, Michigan, USA

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Joseph Landman,

Joseph Landman

Scalable Informatics LLC, Canton, Michigan, USA

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Vipin Chaudhary,

Vipin Chaudhary

Department of Computer Science and Engineering, The State University of New York, Buffalo, New York, USA

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Book Editor(s):El-Ghazali Talbi,

El-Ghazali Talbi

LIFL, University of Lille, INRIA, CNRS, Lille, France

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Albert Y. Zomaya,

Albert Y. Zomaya

School of Information Technology, University of Sydney, Sydney, Australia

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First published: 30 April 2007

https://doi.org/10.1002/9780470191637.ch3

Citations: 2

Summary

This chapter contains sections titled:

Introduction
Background
Techniques for Accelerating Hmmer
Conventional CPU Optimizations
Conclusions
References

Citing Literature

Grid Computing for Bioinformatics and Computational Biology