Programmed cell death 1 genetic variant and liver damage in nonalcoholic fatty liver disease
Rosaria M. Pipitone
Sezione di Gastroenterologia e Epatologia, Dipartimento di Promozione della Salute, Materno-Infantile, di Medicina Interna e Specialistica di Eccellenza “G. D'Alessandro”, University of Palermo, Palermo, Italy
Search for more papers by this authorFrancesco Malvestiti
Department of Pathophysiology and Transplantation, Università degli Studi di Milano, Milan, Italy
Search for more papers by this authorGrazia Pennisi
Sezione di Gastroenterologia e Epatologia, Dipartimento di Promozione della Salute, Materno-Infantile, di Medicina Interna e Specialistica di Eccellenza “G. D'Alessandro”, University of Palermo, Palermo, Italy
Search for more papers by this authorOveis Jamialahmadi
Department of Molecular and Clinical Medicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden
Search for more papers by this authorPaola Dongiovanni
General Medicine and Metabolic Diseases, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy
Search for more papers by this authorGiorgio Bertolazzi
Tumor Immunology Unit, University of Palermo School of Medicine, Palermo, Italy
Search for more papers by this authorJussi Pihlajamäki
Department of Clinical Nutrition, Institute of Public Health and Clinical Nutrition, University of Eastern Finland, Kuopio, Finland
Search for more papers by this authorHannele Yki-Järvinen
Department of Medicine, University of Helsinki and Helsinki University Central Hospital, Helsinki, Finland
Search for more papers by this authorUmberto Vespasiani-Gentilucci
Clinical Medicine and Hepatology Unit, Department of Internal Medicine and Geriatrics, Campus Bio-Medico University, Rome, Italy
Search for more papers by this authorFederica Tavaglione
Department of Molecular and Clinical Medicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden
Clinical Medicine and Hepatology Unit, Department of Internal Medicine and Geriatrics, Campus Bio-Medico University, Rome, Italy
Search for more papers by this authorSamantha Maurotti
Nutrition Unit, Department of Medical and Surgical Sciences, Magna Graecia University Catanzaro, Catanzaro, Italy
Search for more papers by this authorCristiana Bianco
Precision Medicine, Department of Transfusion Medicine and Hematology, Fondazione IRCCS Cà Granda Pad Marangoni, Milan, Italy
Search for more papers by this authorGabriele Di Maria
Precision Medicine, Department of Transfusion Medicine and Hematology, Fondazione IRCCS Cà Granda Pad Marangoni, Milan, Italy
Search for more papers by this authorMarco Enea
Department of Health Promotion Sciences Maternal and Infant Care, Internal Medicine and Medical Specialties, PROMISE, University of Palermo, Palermo, Italy
Search for more papers by this authorAnna L. Fracanzani
Department of Pathophysiology and Transplantation, Università degli Studi di Milano, Milan, Italy
General Medicine and Metabolic Diseases, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy
Search for more papers by this authorVesa Kärjä
Department of Clinical Nutrition, Institute of Public Health and Clinical Nutrition, University of Eastern Finland, Kuopio, Finland
Search for more papers by this authorGiulia Lupo
Sezione di Gastroenterologia e Epatologia, Dipartimento di Promozione della Salute, Materno-Infantile, di Medicina Interna e Specialistica di Eccellenza “G. D'Alessandro”, University of Palermo, Palermo, Italy
Search for more papers by this authorVille Männistö
Department of Clinical Nutrition, Institute of Public Health and Clinical Nutrition, University of Eastern Finland, Kuopio, Finland
Search for more papers by this authorMarica Meroni
General Medicine and Metabolic Diseases, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy
Search for more papers by this authorRoberto Piciotti
General Medicine and Metabolic Diseases, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy
Search for more papers by this authorSami Qadri
Department of Medicine, University of Helsinki and Helsinki University Central Hospital, Helsinki, Finland
Search for more papers by this authorRossella Zito
Sezione di Gastroenterologia e Epatologia, Dipartimento di Promozione della Salute, Materno-Infantile, di Medicina Interna e Specialistica di Eccellenza “G. D'Alessandro”, University of Palermo, Palermo, Italy
Search for more papers by this authorAntonio Craxì
Sezione di Gastroenterologia e Epatologia, Dipartimento di Promozione della Salute, Materno-Infantile, di Medicina Interna e Specialistica di Eccellenza “G. D'Alessandro”, University of Palermo, Palermo, Italy
Search for more papers by this authorVito Di Marco
Sezione di Gastroenterologia e Epatologia, Dipartimento di Promozione della Salute, Materno-Infantile, di Medicina Interna e Specialistica di Eccellenza “G. D'Alessandro”, University of Palermo, Palermo, Italy
Search for more papers by this authorCalogero Cammà
Sezione di Gastroenterologia e Epatologia, Dipartimento di Promozione della Salute, Materno-Infantile, di Medicina Interna e Specialistica di Eccellenza “G. D'Alessandro”, University of Palermo, Palermo, Italy
Search for more papers by this authorClaudio Tripodo
Tumor Immunology Unit, University of Palermo School of Medicine, Palermo, Italy
Search for more papers by this authorLuca Valenti
Department of Pathophysiology and Transplantation, Università degli Studi di Milano, Milan, Italy
Precision Medicine, Department of Transfusion Medicine and Hematology, Fondazione IRCCS Cà Granda Pad Marangoni, Milan, Italy
Search for more papers by this authorStefano Romeo
Department of Molecular and Clinical Medicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden
Nutrition Unit, Department of Medical and Surgical Sciences, Magna Graecia University Catanzaro, Catanzaro, Italy
Cardiology Department, Sahlgrenska University Hospital, Gothenburg, Sweden
Search for more papers by this authorCorresponding Author
Salvatore Petta
Sezione di Gastroenterologia e Epatologia, Dipartimento di Promozione della Salute, Materno-Infantile, di Medicina Interna e Specialistica di Eccellenza “G. D'Alessandro”, University of Palermo, Palermo, Italy
Correspondence
Salvatore Petta, Sezione di Gastroenterologia e Epatologia, Di.Bi.M.I.S., Università di Palermo, Piazza delle Cliniche, 2, 90127 Palermo, Italy.
Email: [email protected]
Search for more papers by this authorStefania Grimaudo
Sezione di Gastroenterologia e Epatologia, Dipartimento di Promozione della Salute, Materno-Infantile, di Medicina Interna e Specialistica di Eccellenza “G. D'Alessandro”, University of Palermo, Palermo, Italy
Search for more papers by this authorRosaria M. Pipitone
Sezione di Gastroenterologia e Epatologia, Dipartimento di Promozione della Salute, Materno-Infantile, di Medicina Interna e Specialistica di Eccellenza “G. D'Alessandro”, University of Palermo, Palermo, Italy
Search for more papers by this authorFrancesco Malvestiti
Department of Pathophysiology and Transplantation, Università degli Studi di Milano, Milan, Italy
Search for more papers by this authorGrazia Pennisi
Sezione di Gastroenterologia e Epatologia, Dipartimento di Promozione della Salute, Materno-Infantile, di Medicina Interna e Specialistica di Eccellenza “G. D'Alessandro”, University of Palermo, Palermo, Italy
Search for more papers by this authorOveis Jamialahmadi
Department of Molecular and Clinical Medicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden
Search for more papers by this authorPaola Dongiovanni
General Medicine and Metabolic Diseases, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy
Search for more papers by this authorGiorgio Bertolazzi
Tumor Immunology Unit, University of Palermo School of Medicine, Palermo, Italy
Search for more papers by this authorJussi Pihlajamäki
Department of Clinical Nutrition, Institute of Public Health and Clinical Nutrition, University of Eastern Finland, Kuopio, Finland
Search for more papers by this authorHannele Yki-Järvinen
Department of Medicine, University of Helsinki and Helsinki University Central Hospital, Helsinki, Finland
Search for more papers by this authorUmberto Vespasiani-Gentilucci
Clinical Medicine and Hepatology Unit, Department of Internal Medicine and Geriatrics, Campus Bio-Medico University, Rome, Italy
Search for more papers by this authorFederica Tavaglione
Department of Molecular and Clinical Medicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden
Clinical Medicine and Hepatology Unit, Department of Internal Medicine and Geriatrics, Campus Bio-Medico University, Rome, Italy
Search for more papers by this authorSamantha Maurotti
Nutrition Unit, Department of Medical and Surgical Sciences, Magna Graecia University Catanzaro, Catanzaro, Italy
Search for more papers by this authorCristiana Bianco
Precision Medicine, Department of Transfusion Medicine and Hematology, Fondazione IRCCS Cà Granda Pad Marangoni, Milan, Italy
Search for more papers by this authorGabriele Di Maria
Precision Medicine, Department of Transfusion Medicine and Hematology, Fondazione IRCCS Cà Granda Pad Marangoni, Milan, Italy
Search for more papers by this authorMarco Enea
Department of Health Promotion Sciences Maternal and Infant Care, Internal Medicine and Medical Specialties, PROMISE, University of Palermo, Palermo, Italy
Search for more papers by this authorAnna L. Fracanzani
Department of Pathophysiology and Transplantation, Università degli Studi di Milano, Milan, Italy
General Medicine and Metabolic Diseases, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy
Search for more papers by this authorVesa Kärjä
Department of Clinical Nutrition, Institute of Public Health and Clinical Nutrition, University of Eastern Finland, Kuopio, Finland
Search for more papers by this authorGiulia Lupo
Sezione di Gastroenterologia e Epatologia, Dipartimento di Promozione della Salute, Materno-Infantile, di Medicina Interna e Specialistica di Eccellenza “G. D'Alessandro”, University of Palermo, Palermo, Italy
Search for more papers by this authorVille Männistö
Department of Clinical Nutrition, Institute of Public Health and Clinical Nutrition, University of Eastern Finland, Kuopio, Finland
Search for more papers by this authorMarica Meroni
General Medicine and Metabolic Diseases, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy
Search for more papers by this authorRoberto Piciotti
General Medicine and Metabolic Diseases, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy
Search for more papers by this authorSami Qadri
Department of Medicine, University of Helsinki and Helsinki University Central Hospital, Helsinki, Finland
Search for more papers by this authorRossella Zito
Sezione di Gastroenterologia e Epatologia, Dipartimento di Promozione della Salute, Materno-Infantile, di Medicina Interna e Specialistica di Eccellenza “G. D'Alessandro”, University of Palermo, Palermo, Italy
Search for more papers by this authorAntonio Craxì
Sezione di Gastroenterologia e Epatologia, Dipartimento di Promozione della Salute, Materno-Infantile, di Medicina Interna e Specialistica di Eccellenza “G. D'Alessandro”, University of Palermo, Palermo, Italy
Search for more papers by this authorVito Di Marco
Sezione di Gastroenterologia e Epatologia, Dipartimento di Promozione della Salute, Materno-Infantile, di Medicina Interna e Specialistica di Eccellenza “G. D'Alessandro”, University of Palermo, Palermo, Italy
Search for more papers by this authorCalogero Cammà
Sezione di Gastroenterologia e Epatologia, Dipartimento di Promozione della Salute, Materno-Infantile, di Medicina Interna e Specialistica di Eccellenza “G. D'Alessandro”, University of Palermo, Palermo, Italy
Search for more papers by this authorClaudio Tripodo
Tumor Immunology Unit, University of Palermo School of Medicine, Palermo, Italy
Search for more papers by this authorLuca Valenti
Department of Pathophysiology and Transplantation, Università degli Studi di Milano, Milan, Italy
Precision Medicine, Department of Transfusion Medicine and Hematology, Fondazione IRCCS Cà Granda Pad Marangoni, Milan, Italy
Search for more papers by this authorStefano Romeo
Department of Molecular and Clinical Medicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden
Nutrition Unit, Department of Medical and Surgical Sciences, Magna Graecia University Catanzaro, Catanzaro, Italy
Cardiology Department, Sahlgrenska University Hospital, Gothenburg, Sweden
Search for more papers by this authorCorresponding Author
Salvatore Petta
Sezione di Gastroenterologia e Epatologia, Dipartimento di Promozione della Salute, Materno-Infantile, di Medicina Interna e Specialistica di Eccellenza “G. D'Alessandro”, University of Palermo, Palermo, Italy
Correspondence
Salvatore Petta, Sezione di Gastroenterologia e Epatologia, Di.Bi.M.I.S., Università di Palermo, Piazza delle Cliniche, 2, 90127 Palermo, Italy.
Email: [email protected]
Search for more papers by this authorStefania Grimaudo
Sezione di Gastroenterologia e Epatologia, Dipartimento di Promozione della Salute, Materno-Infantile, di Medicina Interna e Specialistica di Eccellenza “G. D'Alessandro”, University of Palermo, Palermo, Italy
Search for more papers by this authorRosaria Maria Pipitone, Francesco Malvestiti, Grazia Pennisi and Oveis Jamialahmadi equally contributed to the paper.
Luca Valenti, Stefano Romeo, Salvatore Petta and Stefania Grimaudo equally contributed to the paper.
Handling Editor: Alejandro Forner
Abstract
Background and Aims
Programmed cell death 1/programmed cell death-ligand 1 (PD-1/PDL-1) axis has been reported to modulate liver inflammation and progression to hepatocellular carcinoma (HCC) in patients with nonalcoholic fatty liver disease (NAFLD). Here, we examined whether the PDCD1 variation is associated with NAFLD severity in individuals with liver biopsy.
Methods
We examined the impact of PDCD1 gene variants on HCC, as robust severe liver disease phenotype in UK Biobank participants. The strongest genetic association with the rs13023138 G>C variation was subsequently tested for association with liver damage in 2889 individuals who underwent liver biopsy for suspected nonalcoholic steatohepatitis (NASH). Hepatic transcriptome was examined by RNA-Seq in a subset of NAFLD individuals (n = 121). Transcriptomic and deconvolution analyses were performed to identify biological pathways modulated by the risk allele.
Results
The rs13023138 C>G showed the most robust association with HCC in UK Biobank (p = 5.28E-4, OR = 1.32, 95% CI [1.1, 1.5]). In the liver biopsy cohort, rs13023138 G allele was independently associated with severe steatosis (OR 1.17, 95% CI 1.02-1.34; p = .01), NASH (OR 1.22, 95% CI 1.09-1.37; p < .001) and advanced fibrosis (OR 1.26, 95% CI 1.06-1.50; p = .007). At deconvolution analysis, rs13023138 G>C allele was linked to higher hepatic representation of M1 macrophages, paralleled by upregulation of pathways related to inflammation and higher expression of CXCR6.
Conclusions
The PDCD1 rs13023138 G allele was associated with HCC development in the general population and with liver disease severity in patients at high risk of NASH.
CONFLICT OF INTEREST STATEMENT
The authors declare no conflicts of interest.
Supporting Information
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liv15586-sup-0002-Supplementary Tables 1-2-3-4-5-8.docxWord 2007 document , 88.3 KB |
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REFERENCES
- 1Eslam M, Newsome PN, Sarin SK, et al. A new definition for metabolic dysfunction-associated fatty liver disease: an international expert consensus statement. J Hepatol. 2020; 73(1): 202-209.
- 2Harris R, Harman DJ, Card TR, Aithal GP, Guha IN. Prevalence of clinically significant liver disease within the general population, as defined by non-invasive markers of liver fibrosis: a systematic review. Lancet Gastroenterol Hepatol. 2017; 2(4): 288-297.
- 3Gu W, Hortlik H, Erasmus HP, et al. Trends and the course of liver cirrhosis and its complications in Germany: nationwide population-based study (2005 to 2018). Lancet Reg Health Eur. 2021; 12:100240. doi:10.1016/j.lanepe.2021.100240
- 4Vitale A, Svegliati-Baroni G, Ortolani A, et al. Italian Liver Cancer (ITA.LI.CA) group. Epidemiological trends and trajectories of MAFLD-associated hepatocellular carcinoma 2002-2033: the ITA.LI.CA database. Gut. 2021; 72: 141-152. doi:10.1136/gutjnl-2021-324915
- 5Haldar D, Kern B, Hodson J, et al. European Liver and Intestine Transplant Association (ELITA). Outcomes of liver transplantation for non-alcoholic steatohepatitis: a European Liver Transplant Registry study. J Hepatol. 2019; 71(2): 313-322. doi:10.1016/j.jhep.2019.04.011
- 6Pennisi G, Pipitone RM, Enea M, et al. A genetic and metabolic staging system for predicting the outcome of nonalcoholic fatty liver disease. Hepatol Commun. 2022; 6: 1032-1044. doi:10.1002/hep4.1877
- 7Trépo E, Valenti L. Update on NAFLD genetics: from new variants to the clinic. J Hepatol. 2020; 72(6): 1196-1209.
- 8Romeo S, Sanyal A, Valenti L. Leveraging human genetics to identify potential new treatments for fatty liver disease. Cell Metab. 2020; 31: 35-45.
- 9Romeo S, Kozlitina J, Xing C, et al. Genetic variation in PNPLA3 confers susceptibility to nonalcoholic fatty liver disease. Nat Genet. 2008; 40: 1461-1465.
- 10Grimaudo S, Pipitone RM, Pennisi G, et al. Association between PNPLA3 rs738409 C>G variant and liver-related outcomes in patients with nonalcoholic fatty liver disease. Clin Gastroenterol Hepatol. 2020; 18(4): 935-944.e3.
- 11Valenti L, Al-Serri A, Daly AK, et al. Homozygosity for the patatin-like phospholipase-3/adiponutrin I148M polymorphism influences liver fibrosis in patients with nonalcoholic fatty liver disease. Hepatology. 2010; 51(4): 1209-1217.
- 12Heymann F, Tacke F. Immunology in the liver from homeostasis to disease. Nat Rev Gastroenterol Hepatol. 2016; 13: 88-110.
- 13Huby T, Gautier EL. Immune cell-mediated features of non-alcoholic steatohepatitis. Nat Rev Immunol. 2022; 22(7): 429-443. doi:10.1038/s41577-021-00639-3
- 14Sutti S, Albano E. Adaptive immunity: an emerging player in the progression of NAFLD. Nat Rev Gastroenterol Hepatol. 2020; 17(2): 81-92.
- 15Dudek M, Pfister D, Donakonda S, et al. Auto-aggressive CXCR6+ CD8 T cells cause liver immune pathology in NASH. Nature. 2021; 592(7854): 444-449.
- 16Sharpe AH, Pauken KE. The diverse functions of the PD1 inhibitory pathway. Nat Rev Immunol. 2018; 18(3): 153-167.
- 17Jiang W, He Y, He W, et al. Exhausted CD8+ T cells in the tumor immune microenvironment: new pathways to therapy. Front Immunol. 2021; 11:622509.
- 18Pfister D, Núñez NG, Pinyol R, et al. NASH limits anti-tumour surveillance in immunotherapy-treated HCC. Nature. 2021; 592(7854): 450-456.
- 19Eldafashi N, Darlay R, Shukla R, et al. A PDCD1 role in the genetic predisposition to NAFLD-HCC? Cancers (Basel). 2021; 13(6): 1412.
- 20Sudlow C, Gallacher J, Allen N, et al. UK biobank: an open access resource for identifying the causes of a wide range of complex diseases of middle and old age. PLoS Med. 2015; 12(3):e1001779.
- 21Jamialahmadi O, Mancina RM, Ciociola E, et al. Exome-wide association study on alanine aminotransferase identifies sequence variants in the GPAM and APOE associated with fatty liver disease. Gastroenterology. 2021; 160(5): 1634-1646.e7.
- 22Tavaglione F, De Vincentis A, Bruni V, et al. Accuracy of controlled attenuation parameter for assessing liver steatosis in individuals with morbid obesity before bariatric surgery. Liver Int. 2022; 42(2): 374-383.
- 23 American Diabetes Association. Clinical practice recommendations 2000 committee report. Diabetes Care. 2000; 23: S4-S19.
- 24Colloredo G, Guido M, Sonzogni A, Leandro G. Impact of liver biopsy size on histological evaluation of chronic viral hepatitis: the smaller the sample, the milder the disease. J Hepatol. 2003; 39: 239-244.
- 25Petta S, Valenti L, Marra F, et al. MERTK rs4374383 polymorphism affects the severity of fibrosis in non-alcoholic fatty liver disease. J Hepatol. 2016; 64(3): 682-690.
- 26Kleiner DE, Brunt EM, Van Natta M, et al. Design and validation of a histological scoring system for nonalcoholic fatty liver disease. Hepatology. 2005; 411: 313-321.
- 27Cunningham F, Amode MR, Barrell D, et al. Ensembl 2015. Nucleic Acids Res. 2015; 43(Database issue): D662-D669.
- 28Bolger AM, Lohse M, Usadel B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 2014; 30(15): 2114-2120.
- 29Zerbino DR, Achuthan P, Akanni W, et al. Ensembl 2018. Nucleic Acids Res. 2018; 46(D1): D754-D761.
- 30Dobin A, Davis CA, Schlesinger F, et al. STAR: ultrafast universal RNA-seq aligner. Bioinformatics. 2013; 29(1): 15-21.
- 31Li B, Dewey CN. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinf. 2011; 12: 323.
- 32Love MI, Huber W, Anders S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 2014; 15(12): 550.
- 33Subramanian A, Tamayo P, Mootha VK, et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci USA. 2005; 102(43): 15545-15550.
- 34Liberzon A, Birger C, Thorvaldsdottir H, Ghandi M, Mesirov JP, Tamayo P. The molecular signatures database (MSigDB) hallmark gene set collection. Cell Syst. 2015; 1(6): 417-425.
- 35Li T, Jingxin F, Zeng Z, et al. TIMER2.0 for analysis of tumor-infiltrating immune cells. Nucleic Acids Res. 2020; 48(W1): W509-W514. doi:10.1093/nar/gkaa407
- 36Huang R, Grishagin I, Wang Y, et al. The NCATS BioPlanet—an integrated platform for exploring the universe of cellular signaling pathways for toxicology, systems biology, and chemical genomics. Front Pharmacol. 2019; 10: 445. doi:10.3389/fphar.2019.00445 ISSN:1663–9812.
- 37Sato T, Thorlacius H, Johnston B, et al. Role for CXCR6 in recruitment of activated CD8+ lymphocytes to inflamed liver. J Immunol. 2005; 174(1): 277-283.
- 38Finn RS, Qin S, Ikeda M, et al. Atezolizumab plus Bevacizumab in Unresectable Hepatocellular Carcinoma. N Engl J Med. 2020; 382(20): 1894-1905.
- 39Lefere S, Tacke F. Macrophages in obesity and non-alcoholic fatty liver disease: crosstalk with metabolism. JHEP Rep. 2019; 1(1): 30-43.
- 40Hoan NX, Huyen PTM, Binh MT, et al. Genetic variants of programmed cell death 1 are associated with HBV infection and liver disease progression. Sci Rep. 2021; 11(1): 7772.
- 41Zhang X, Fan L, Wu J, et al. Erratum to: “macrophage p38 alpha promotes nutritional steatohepatitis through M1 polarization (J Hepatol 2019; 71(1):163-174)”. J Hepatol. 2020; 73(3): 742-743.
- 42Wang C, Ma C, Gong L, et al. Macrophage polarization and its role in liver disease. Front Immunol. 2021; 12:803037.
- 43Marra F, Gastaldelli A, Baroni GS, Tell G, Tiribelli C. Molecular basis and mechanisms of progression of non-alcoholic steatohepatitis. Trends Mol Med. 2008; 14: 72-81.
- 44Huang D, Ovcharenko I. Identifying causal regulatory SNPs in ChIP-seq enhancers. Nucleic Acids Res. 2015; 43(1): 225-236.
- 45Soskic B, Cano-Gamez E, Smyth DJ, et al. Immune disease risk variants regulate gene expression dynamics during CD4+ T cell activation. Nat Genet. 2022; 54(6): 817-826.