• Issue

    Concurrency and Computation: Practice and Experience: Volume 26, Issue 13

    Special issue on XSEDE13
    i-ii, 2107-2343
    10 September 2014
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Issue Information

Free Access

Issue Information

  • Pages: i-ii
  • First Published: 25 July 2014

Editorial

Free Access

XSEDE13 Special Issue Conference Publications

Nancy Wilkins-Diehr,  Amit Majumdar, 
  • Pages: 2107-2111
  • First Published: 02 June 2014

Special Issue Papers

Optimizing high performance computing workflow for protein functional annotation

Larissa Stanberry,  Bhanu Rekepalli,  Yuan Liu,  Paul Giblock,  Roger Higdon,  Elizabeth Montague,  William Broomall,  Natali Kolker,  Eugene Kolker, 
  • Pages: 2112-2121
  • First Published: 24 April 2014

Calibrating building energy models using supercomputer trained machine learning agents

Jibonananda Sanyal,  Joshua New,  Richard E. Edwards,  Lynne Parker, 
  • Pages: 2122-2133
  • First Published: 31 March 2014

An investigation of the effects of hard and soft errors on graphics processing unit-accelerated molecular dynamics simulations

Robin M. Betz,  Nathan A. DeBardeleben,  Ross C. Walker, 
  • Pages: 2134-2140
  • First Published: 06 March 2014

Making campus bridging work for researchers: Can campus bridging experts accelerate discovery?

Scott Michael,  Abhinav Thota,  Robert Henschel,  Rich Knepper, 
  • Pages: 2141-2148
  • First Published: 03 April 2014

Fast construction of nanosecond level snapshots of financial markets

Jiading Gai,  Dong Ju Choi,  David O'Neal,  Mao Ye,  Robert S. Sinkovits, 
  • Pages: 2149-2156
  • First Published: 12 February 2014

Enabling large-scale next-generation sequence assembly with Blacklight

M. Brian Couger,  Lenore Pipes,  Fabio Squina,  Rolf Prade,  Adam Siepel,  Robert Palermo,  Michael G. Katze,  Christopher E. Mason,  Philip D. Blood, 
  • Pages: 2157-2166
  • First Published: 18 March 2014

Using Lucene to index and search the digitized 1940 US Census

Liana Diesendruck,  Rob Kooper,  Luigi Marini,  Kenton McHenry, 
  • Pages: 2167-2177
  • First Published: 06 March 2014

Discovery of biological networks using an optimized partial correlation coefficient with information theory algorithm on Stampede's Xeon and Xeon Phi processors

Lars Koesterke,  James E. Koltes,  Nathan T. Weeks,  Kent Milfeld,  Matthew W. Vaughn,  James M. Reecy,  Dan Stanzione, 
  • Pages: 2178-2190
  • First Published: 27 March 2014

Comprehensive, open-source resource usage measurement and analysis for HPC systems

James C. Browne,  Robert L. DeLeon,  Abani K. Patra,  William L. Barth,  John Hammond,  Matthew D. Jones,  Thomas R. Furlani,  Barry I. Schneider,  Steven M. Gallo,  Amin Ghadersohi,  Ryan J. Gentner,  Jeffrey T. Palmer,  Nikolay Simakov,  Martins Innus,  Andrew E. Bruno,  Joseph P. White,  Cynthia D. Cornelius,  Thomas Yearke,  Kyle Marcus,  Gregor von Laszewski,  Fugang Wang, 
  • Pages: 2191-2209
  • First Published: 06 March 2014

National Center for Atmospheric Research storage accounting and analysis possibilities

David L. Hart,  Pam Gillman,  Erich Thanhardt, 
  • Pages: 2210-2224
  • First Published: 05 March 2014
Open Access

CILogon: A federated X.509 certification authority for cyberinfrastructure logon

Jim Basney,  Terry Fleury,  Jeff Gaynor, 
  • Pages: 2225-2239
  • First Published: 04 April 2014

Batchsubmit: a high-volume batch submission system for earthquake engineering simulation

Anup Mohan,  Thomas Hacker,  Gregory P. Rodgers,  Tanzima Islam, 
  • Pages: 2240-2252
  • First Published: 05 March 2014

FluMapper: a cyberGIS application for interactive analysis of massive location-based social media

Anand Padmanabhan,  Shaowen Wang,  Guofeng Cao,  Myunghwa Hwang,  Zhenhua Zhang,  Yizhao Gao,  Kiumars Soltani,  Yan Liu, 
  • Pages: 2253-2265
  • First Published: 16 May 2014

Experiences building Globus Genomics: a next-generation sequencing analysis service using Galaxy, Globus, and Amazon Web Services

Ravi K. Madduri,  Dinanath Sulakhe,  Lukasz Lacinski,  Bo Liu,  Alex Rodriguez,  Kyle Chard,  Utpal J. Dave,  Ian T. Foster, 
  • Pages: 2266-2279
  • First Published: 08 April 2014

Advancements of the UltraScan scientific gateway for open standards-based cyberinfrastructures

Shahbaz Memon,  Morris Riedel,  Florian Janetzko,  Borries Demeler,  Gary Gorbet,  Suresh Marru,  Andrew Grimshaw,  Lahiru Gunathilake,  Raminder Singh,  Norbert Attig,  Thomas Lippert, 
  • Pages: 2280-2291
  • First Published: 13 March 2014

Providing resource information to users of a national computing center

Matthew Hanlon,  Warren Smith,  Stephen Mock, 
  • Pages: 2292-2302
  • First Published: 05 March 2014

Game design for bioinformatics and cyberinfrastructure learning: a parallel computing case study

Daniel Perry,  John Robinson,  Stephanie Cruz,  Cecilia Aragon,  Jeanne Ting Chowning,  Mette Peters, 
  • Pages: 2303-2315
  • First Published: 27 March 2014

INSTANCES: incorporating computational scientific thinking advances into education and science courses

Rubin Landau,  Greg Mulder,  Raquell Holmes,  Sofya Borinskaya,  NamHwa Kang,  Cristian Bordeianu, 
  • Pages: 2316-2328
  • First Published: 02 June 2014

Development of undergraduate and graduate programs in computational science

Péter Molnár,  David M. Toth,  Rachel E. Vincent-Finley, 
  • Pages: 2329-2335
  • First Published: 14 March 2014

Training, education, and outreach—raising the bar

Linda Akli,  Samuel L. Moore,  Lorna I. Rivera,  Patricia J. Teller, 
  • Pages: 2336-2343
  • First Published: 06 March 2014