Volume 26, Issue 13 pp. 2280-2291
Special Issue Paper

Advancements of the UltraScan scientific gateway for open standards-based cyberinfrastructures

Shahbaz Memon

Corresponding Author

Shahbaz Memon

Jülich Supercomputing Centre, Forschungszentrum Jülich, Germany

School of Engineering and Natural Sciences, University of Iceland, Reykjavik, Iceland

Correspondence to: Shahbaz Memon, Forschungszentrum Jülich, 52425 Jülich, Germany.

E-mail: [email protected]

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Morris Riedel

Morris Riedel

Jülich Supercomputing Centre, Forschungszentrum Jülich, Germany

School of Engineering and Natural Sciences, University of Iceland, Reykjavik, Iceland

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Florian Janetzko

Florian Janetzko

Jülich Supercomputing Centre, Forschungszentrum Jülich, Germany

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Borries Demeler

Borries Demeler

The University of Texas Health, Science Center at San Antonio, San Antonio, Texas, USA

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Gary Gorbet

Gary Gorbet

The University of Texas Health, Science Center at San Antonio, San Antonio, Texas, USA

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Suresh Marru

Suresh Marru

Indiana University Bloomington, Bloomington, Indiana, USA

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Andrew Grimshaw

Andrew Grimshaw

Department of Computer Science, University of Virginia, Virginia, USA

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Lahiru Gunathilake

Lahiru Gunathilake

Indiana University Bloomington, Bloomington, Indiana, USA

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Raminder Singh

Raminder Singh

Indiana University Bloomington, Bloomington, Indiana, USA

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Norbert Attig

Norbert Attig

Jülich Supercomputing Centre, Forschungszentrum Jülich, Germany

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Thomas Lippert

Thomas Lippert

Jülich Supercomputing Centre, Forschungszentrum Jülich, Germany

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First published: 13 March 2014
Citations: 9

SUMMARY

The UltraScan data analysis application is a software package that is able to take advantage of computational resources in order to support the interpretation of analytical ultracentrifugation experiments. Since 2006, the UltraScan scientific gateway has been used with Web browsers in TeraGrid by scientists studying the solution properties of biological and synthetic molecules. UltraScan supports its users with a scientific gateway in order to leverage the power of supercomputing. In this contribution, we will focus on several advancements of the UltraScan scientific gateway architecture with a standardized job management while retaining its lightweight design and end user interaction experience. This paper also presents insights into a production deployment of UltraScan in Europe. The approach is based on open standards with respect to job management and submissions to the Extreme Science and Engineering Discovery Environment in the USA and to similar infrastructures in Europe such as the European Grid Infrastructure or the Partnership for Advanced Computing in Europe (PRACE). Our implementation takes advantage of the Apache Airavata framework for scientific gateways that lays the foundation for easy integration into several other scientific gateways. Copyright © 2014 John Wiley & Sons, Ltd.

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