• Issue

    Acta Crystallographica Section B: Volume 80, Issue 6

    509-820
    December 2024

scientific commentaries

Magnetic crystallography comes of age

  • Pages: 509-513
  • First Published: 02 December 2024
Magnetic crystallography comes of age

A special issue of Acta CrystallographicaSection B reports the great progress made recently in the determination, reporting, and archiving of magnetic structures, of which there are now more than 2000. The infrastructure needed to support the field is now in place. The special issue also highlights new science made possible by these developments.

The seventh blind test highlights exciting developments in crystal structure prediction

  • Pages: 514-516
  • First Published: 02 December 2024
The seventh blind test highlights exciting developments in crystal structure prediction

Two reports on the seventh blind test on crystal structure prediction extensively discuss the cutting-edge avant-garde methods of structure generation and energy ranking.

research papers

Open Access

The seventh blind test of crystal structure prediction: structure generation methods

Lily M. HunnisettJonas NymanNicholas FranciaNathan S. AbrahamClaire S. AdjimanSrinivasulu AitipamulaTamador AlkhidirMubarak AlmehairbiAndrea AnelliDylan M. AnstineJohn E. AnthonyJoseph E. ArnoldFaezeh BahramiMichael A. BellucciRajni M. BhardwajImanuel BierJoanna A. BisA. Daniel BoeseDavid H. BowskillJames BramleyJan Gerit BrandenburgDoris E. BraunPatrick W. V. ButlerJoseph CaddenStephen CarinoEric J. ChanChao ChangBingqing ChengSarah M. ClarkeSimon J. ColesRichard I. CooperRicky CouchRamon CuadradoTom DardenGraeme M. DayHanno DietrichYiming DingAntonio DiPasqualeBhausaheb DhokaleBouke P. van EijckMark R. J. ElsegoodDzmitry FirahaWenbo FuKaori FukuzawaJoseph GloverHitoshi GotoChandler GreenwellRui GuoJürgen HarterJulian HelfferichDetlef W. M. HofmannJohannes HojaJohn HoneRichard HongGeoffrey HutchisonYasuhiro IkabataOlexandr IsayevOmmair IshaqueVarsha JainYingdi JinAling JingErin R. JohnsonIan JonesK. V. Jovan JoseElena A. KabovaAdam KeatesPaul F. KellyDmitry KhakimovStefanos KonstantinopoulosLiudmila N. KuleshovaHe LiXiaolu LinAlexander ListCongcong LiuYifei Michelle LiuZenghui LiuZhi-Pan LiuJoseph W. LubachNoa MaromAlexander A. MaryewskiHiroyuki MatsuiAlessandra MatteiR. Alex MayoJohn W. MelkumovSharmarke MohamedZahrasadat Momenzadeh AbardehHari S. MuddanaNaofumi NakayamaKamal Singh NayalMarcus A. NeumannRahul NikharShigeaki ObataDana O'ConnorArtem R. OganovKoji OkuwakiAlberto Otero-de-la-RozaConstantinos C. PantelidesSean ParkinChris J. PickardLuca PiliaTatyana PivinaRafał PodeszwaAlastair J. A. PriceLouise S. PriceSarah L. PriceMichael R. ProbertAngeles PulidoGunjan Rajendra RamtekeAtta Ur RehmanSusan M. Reutzel-EdensJutta RogalMarta J. RossAdrian F. RumsonGhazala SadiqZeinab M. SaeedAlireza SalimiMatteo SalvalaglioLeticia Sanders de AlmadaKiran SasikumarSivakumar SekharanCheng ShangKenneth ShanklandKotaro ShinoharaBaimei ShiXuekun ShiA. Geoffrey SkillmanHongxing SongNina StrasserJacco van de StreekIsaac J. SugdenGuangxu SunKrzysztof SzalewiczBenjamin I. TanLu TanFrank TarczynskiChristopher R. TaylorAlexandre TkatchenkoRithwik TomMark E. TuckermanYohei UtsumiLeslie Vogt-MarantoJake WeatherstonLuke J. WilkinsonRobert D. WillacyLukasz WojtasGrahame R. WoollamZhuocen YangEtsuo YonemochiXin YueQun ZengYizu ZhangTian ZhouYunfei ZhouRoman ZubatyukJason C. Cole
  • Pages: 517-547
  • First Published: 17 October 2024
The seventh blind test of crystal structure prediction: structure generation methods

The results of the seventh blind test of crystal structure prediction are presented, focusing on structure generation methods.

Open Access

The seventh blind test of crystal structure prediction: structure ranking methods

Lily M. HunnisettNicholas FranciaJonas NymanNathan S. AbrahamSrinivasulu AitipamulaTamador AlkhidirMubarak AlmehairbiAndrea AnelliDylan M. AnstineJohn E. AnthonyJoseph E. ArnoldFaezeh BahramiMichael A. BellucciGregory J. O. BeranRajni M. BhardwajRaffaello BiancoJoanna A. BisA. Daniel BoeseJames BramleyDoris E. BraunPatrick W. V. ButlerJoseph CaddenStephen CarinoCtirad ČervinkaEric J. ChanChao ChangSarah M. ClarkeSimon J. ColesCameron J. CookRichard I. CooperTom DardenGraeme M. DayWenda DengHanno DietrichAntonio DiPasqualeBhausaheb DhokaleBouke P. van EijckMark R. J. ElsegoodDzmitry FirahaWenbo FuKaori FukuzawaNikolaos GalanakisHitoshi GotoChandler GreenwellRui GuoJürgen HarterJulian HelfferichJohannes HojaJohn HoneRichard HongMichal HušákYasuhiro IkabataOlexandr IsayevOmmair IshaqueVarsha JainYingdi JinAling JingErin R. JohnsonIan JonesK. V. Jovan JoseElena A. KabovaAdam KeatesPaul F. KellyJiří KlimešVeronika KostkováHe LiXiaolu LinAlexander ListCongcong LiuYifei Michelle LiuZenghui LiuIvor LončarićJoseph W. LubachJan LudíkNoa MaromHiroyuki MatsuiAlessandra MatteiR. Alex MayoJohn W. MelkumovBruno MladineoSharmarke MohamedZahrasadat Momenzadeh AbardehHari S. MuddanaNaofumi NakayamaKamal Singh NayalMarcus A. NeumannRahul NikharShigeaki ObataDana O'ConnorArtem R. OganovKoji OkuwakiAlberto Otero-de-la-RozaSean ParkinAntonio ParunovRafał PodeszwaAlastair J. A. PriceLouise S. PriceSarah L. PriceMichael R. ProbertAngeles PulidoGunjan Rajendra RamtekeAtta Ur RehmanSusan M. Reutzel-EdensJutta RogalMarta J. RossAdrian F. RumsonGhazala SadiqZeinab M. SaeedAlireza SalimiKiran SasikumarSivakumar SekharanKenneth ShanklandBaimei ShiXuekun ShiKotaro ShinoharaA. Geoffrey SkillmanHongxing SongNina StrasserJacco van de StreekIsaac J. SugdenGuangxu SunKrzysztof SzalewiczLu TanKehan TangFrank TarczynskiChristopher R. TaylorAlexandre TkatchenkoRithwik TomPetr ToušMark E. TuckermanPablo A. UnzuetaYohei UtsumiLeslie Vogt-MarantoJake WeatherstonLuke J. WilkinsonRobert D. WillacyLukasz WojtasGrahame R. WoollamYi YangZhuocen YangEtsuo YonemochiXin YueQun ZengTian ZhouYunfei ZhouRoman ZubatyukJason C. Cole
  • Pages: 548-574
  • First Published: 17 October 2024
The seventh blind test of crystal structure prediction: structure ranking methods

The results of the seventh blind test of crystal structure prediction are presented, focusing on structure ranking methods.

Open Access

Polymorph sampling with coupling to extended variables: enhanced sampling of polymorph energy landscapes and free energy perturbation of polymorph ensembles

  • Pages: 575-594
  • First Published: 17 October 2024
Polymorph sampling with coupling to extended variables: enhanced sampling of polymorph energy landscapes and free energy perturbation of polymorph ensembles

A design is tested for a polymorph search algorithm relevant for enhanced sampling of crystal structures based on the relation between internal molecular structure variables and corresponding crystal polymorphs as representative of the inherent vapor to crystal transitions that exist in nature. Molecules are represented as extended variables within a thermal reservoir. Unit-cell variables are generated using pseudo-random sampling incorporating a harmonic coupling to extended variables.

Open Access

Assessment of the exchange-hole dipole moment dispersion correction for the energy ranking stage of the seventh crystal structure prediction blind test

  • Pages: 595-605
  • First Published: 17 October 2024
Assessment of the exchange-hole dipole moment dispersion correction for the energy ranking stage of the seventh crystal structure prediction blind test

Density-functional calculations using numerical atomic orbitals and the exchange-hole dipole moment dispersion model were applied to the energy ranking stage of the seventh crystal structure prediction blind test. This methodology gave successful predictions of the experimentally isolated polymorphs as being low in energy for three of the compounds considered, and for one additional compound upon inclusion of a vibrational free-energy correction.

Contrasting conformational behaviors of molecules XXXI and XXXII in the seventh blind test of crystal structure prediction

  • Pages: 606-619
  • First Published: 17 October 2024
Contrasting conformational behaviors of molecules XXXI and XXXII in the seventh blind test of crystal structure prediction

The conformational energies and crystal energy landscapes for molecules XXXI and XXXII from the seventh blind test of crystal structure prediction are investigated with a variety of electronic structure methods. Whereas molecule XXXI can be modeled relatively straightforwardly, molecule XXXII proves challenging even for state-of-the-art quantum chemistry techniques.

Predicting co-crystal structures of N-halide phthalimides with 3,5-dimethylpyridine

  • Pages: 620-627
  • First Published: 02 December 2024
Predicting co-crystal structures of N-halide phthalimides with 3,5-dimethylpyridine

It is shown that the evolutionary algorithm USPEX can successfully predict stable stoichiometries of co-crystals and how synthon analysis helps to aid crystal structure prediction by identifying the likeliest structures.

Crystal structure predictions for molecules with soft degrees of freedom using intermonomer force fields derived from first principles

  • Pages: 628-655
  • First Published: 02 December 2024
Crystal structure predictions for molecules with soft degrees of freedom using intermonomer force fields derived from first principles

Crystal structure predictions for targets of CCDC's seventh blind test, all containing monomers with soft degrees of freedom, were performed using intermonomer force fields (FFs) fitted to ab initio computed interaction energies. The protocol accounting for monomers' flexibility by considering low-energy conformers was reasonably successful, but the protocol using empirical intramonomer FFs was not, even if some parameters in these FFs were refitted to ab initio data.

Spin reorientation and the interplay of magnetic sublattices in Er2CuMnMn4O12

  • Pages: 656-664
  • First Published: 28 October 2024
Spin reorientation and the interplay of magnetic sublattices in Er2CuMnMn4O12

We show that the interplay of multiple magnetic sublattices in Er2CuMnMn4O12 leads to four magnetic phase transitions characterized by the onset of ferrimagnetic order, spin-reorientation, spin canting, and the polarization of Er ions. While we elucidate numerous features of this complex magnetic system, the exact nature of the low-temperature coupling between erbium and manganese, and the origin of a k = (0, 0, ½) modulation, remain intriguing topics for future studies.

Open Access

Symmetry, magnetic transitions and multiferroic properties of B-site-ordered A2MnB′O6 perovskites (B′ = [Co, Ni])

  • Pages: 665-675
  • First Published: 02 December 2024
Symmetry, magnetic transitions and multiferroic properties of B-site-ordered A2MnB′O6 perovskites (B′ = [Co, Ni])

A comparative description is presented of the symmetry and the magnetic structures found in the family of double perovskites A2MnB′O6 (mainly B′ = Co and some Ni compounds for comparative purposes).

Crystal structure of the incommensurate modulated high-pressure phase of the potassium guaninate monohydrate

  • Pages: 676-681
  • First Published: 17 October 2024
Crystal structure of the incommensurate modulated high-pressure phase of the potassium guaninate monohydrate

Incommensurate phase of potassium guaninate monohydrate is the first example of a modulation in purine derivatives and of a high-pressure incommensurate crystal structure to be solved for an organic compound.

From `crystallographic accuracy' to `thermodynamic accuracy': a redetermination of the crystal structure of calcium atorvastatin trihydrate (Lipitor®)

  • Pages: 682-687
  • First Published: 17 October 2024
From `crystallographic accuracy' to `thermodynamic accuracy': a redetermination of the crystal structure of calcium atorvastatin trihydrate (Lipitor®)

The crystal structure of calcium atorvastatin trihydrate was redetermined from previously published synchrotron powder diffraction data to give a much-improved agreement with two independent density-functional theory calculations.

Synthesis and structural study of the partially disordered complex hexagonal phase δ1-MnZn9.7

  • Pages: 688-694
  • First Published: 17 October 2024
Synthesis and structural study of the partially disordered complex hexagonal phase δ1-MnZn9.7

A detailed structural characterization of the δ1-MnZn9.7 phase is presented.

Open Access

Crystal structure and compressibility of magnesium chloride heptahydrate found under high pressure

  • Pages: 695-705
  • First Published: 28 October 2024
Crystal structure and compressibility of magnesium chloride heptahydrate found under high pressure

In-situ diffraction measurements reveal that magnesium chloride forms a unique high-pressure phase, a heptahydrate, above 2 GPa. The hydrogen-bonding structure appears to contain orientational disorder.

A contribution to the crystal chemistry and topology of organic thiosulfates: bis(1-methylpiperazinium)·S2O3·H2O versus 1-methylpiperazinediium·S2O3·3H2O

  • Pages: 706-714
  • First Published: 02 December 2024
A contribution to the crystal chemistry and topology of organic thiosulfates: bis(1-methylpiperazinium)·S2O3·H2O versus 1-methylpiperazinediium·S2O3·3H2O

Crystal structure and topology of two new thiosulfates formed with mono- and diprotonated species of 1-methylpiperazine is reported.

Crystal structure of nickel orthovanadate (Ni3V2O8) at 299 (3) K and 1323 (8) K: an X-ray diffraction study

  • Pages: 715-723
  • First Published: 28 October 2024
Crystal structure of nickel orthovanadate (Ni3V2O8) at 299 (3) K and 1323 (8) K: an X-ray diffraction study

The structure of Ni3V2O8 was studied using X-ray diffraction at temperatures of 299 and 1323 K. No phase transition at high temperature is observed. The variation in V—O bond length is small as compared with the Ni—O bond due to its high rigidity.

Open Access

The incommensurate composite YxOs4B4 (x = 1.161)

  • Pages: 724-731
  • First Published: 07 November 2024
The incommensurate composite YxOs4B4 (x = 1.161)

Tetragonal YxOs4B4 (x = 1.161) is an incommensurate composite of columns of Y atoms in a three-dimensional Os4B4 framework. The structure was refined using the superspace approach.

Morphological control for hollow rod crystals of a photochromic diarylethene on spherulites by surface properties of substrates

  • Pages: 732-737
  • First Published: 07 November 2024
Morphological control for hollow rod crystals of a photochromic diarylethene on spherulites by surface properties of substrates

1,2-Bis(3,5-dimethyl-2-thienyl)perfluorocyclopentene formed its own spherulites by sublimation onto the hydrophilic surfaces of the (0001) planes of α-quartz and sapphire substrates. The formation of different morphologies of these spherulites was attributed to the surface properties of each substrate. Depending on the morphology of the spherulites, hollow rod crystals with cross sections of different sizes and shapes and branching structures were generated on the surfaces of the spherulites.

Atypical phase transition, twinning and ferroelastic domain structure in bis(ethylenediammonium) tetrabromozincate(II) bromide, [NH3(CH2)2NH3]2[ZnBr4]Br2

  • Pages: 738-745
  • First Published: 07 November 2024
Atypical phase transition, twinning and ferroelastic domain structure in bis(ethylenediammonium) tetrabromozincate(II) bromide, [NH3(CH2)2NH3]2[ZnBr4]Br2

A unique phase transition, twinning and ferroelastic domain structure in [NH3(CH2)2NH3]2[ZnBr4]Br2 is found. The new additional domain structure is observed at the phase transition on heating, which is preserved after cooling to room temperature.

Open Access

Polymorphism of Pb5(PO4)3OHδ within the LK-99 mixture

  • Pages: 746-750
  • First Published: 02 December 2024
Polymorphism of Pb5(PO4)3OHδ within the LK-99 mixture

A new orthorhombic crystal Pb5(PO4)3OHδ of space-group symmetry Pnma significantly differs differing from the hexagonal apatite phases of Pb10(PO4)6O and Pb5(PO4)3OH.

Structures of hexamethyl-[1,1′-biphenyl]-4,4′-diammonium salts

  • Pages: 751-759
  • First Published: 02 December 2024
Structures of hexamethyl-[1,1′-biphenyl]-4,4′-diammonium salts

The structures of nine hexamethyl-[1,1′-biphenyl]-4,4′-diammonium (HMB) salts are described

Open Access

Seed layer formation by deposition of microcrystallites on a revolving substrate: modeling of the effective linear elastic, piezoelectric, and dielectric coefficients

  • Pages: 760-765
  • First Published: 02 December 2024
Seed layer formation by deposition of microcrystallites on a revolving substrate: modeling of the effective linear elastic, piezoelectric, and dielectric coefficients

The rotating-substrate method of crystallite deposition is modeled, allowing computation of effective material coefficients of the layers resulting from the averaging. A numerical example particularized to ZnO is provided.

Conformational disorder in quercetin dihydrate revealed from ultrahigh-resolution synchrotron diffraction

  • Pages: 766-781
  • First Published: 02 December 2024
Conformational disorder in quercetin dihydrate revealed from ultrahigh-resolution synchrotron diffraction

The charge-density distribution at ultrahigh resolution of quercetin dihydrate crystal reveals a subtle disorder in the catechol ring system. The electrostatic complementarity between the quercetin molecule and its surroundings is good with the water molecules, but less so in the aromatic stacking region.

Coordination geometry flexibility driving supramolecular isomerism of Cu/Mo pillared-layer hybrid networks

  • Pages: 782-792
  • First Published: 02 December 2024
Coordination geometry flexibility driving supramolecular isomerism of Cu/Mo pillared-layer hybrid networks

The hydrothermal synthesis and structural characterization of four novel 3D pillared-layer metal–organic frameworks are studied, revealing how the malleability of copper coordination geometries drives diverse supramolecular isomerism. The findings provide new insights into designing advanced hybrid materials with tailored properties, emphasizing the significant role of reaction conditions and metal ion flexibility in determining network topologies.

Variable stoichiometry and a salt–cocrystal intermediate in multicomponent systems of flucytosine: structural elucidation and their impact on stability

  • Pages: 793-806
  • First Published: 02 December 2024
Variable stoichiometry and a salt–cocrystal intermediate in multicomponent systems of flucytosine: structural elucidation and their impact on stability

Five multicomponent solid forms of antifungal drug flucytosine are reported and the hygroscopic stability was evaluated. A detailed Crystal Structure Database search on the cocrystal/salts of flucytosine was carried out, and the salt/cocrystal formation was assessed based on bond angles and bond distances.

Density functional theory investigation of the phase transition, elastic and thermal characteristics for AuMTe2(M = Ga,In) chalcopyrite compounds

  • Pages: 807-820
  • First Published: 02 December 2024
Density functional theory investigation of the phase transition, elastic and thermal characteristics for AuMTe2(M = Ga,In) chalcopyrite compounds

The first theoretical predictions of the phase transitions, elastic properties and thermal behavior of AuMTe2 (M = Ga,In) chalcopyrite compounds are presented. Using density functional theory and the quasi-harmonic Debye model, key mechanical and thermodynamic properties are analyzed, offering insights valuable for future experimental validation.