Volume 26, Issue 1 980109 pp. 69-78
Article
Open Access

The application of pattern recognition techniques in metabolite fingerprinting of six different Phyllanthus spp.

Saravanan Dharmaraj

Corresponding Author

Saravanan Dharmaraj

Centre of Drug Research Universiti Sains Malaysia Pulau Pinang, Malaysia , usm.my

Centre of Drug Research Universiti Sains Malaysia 11800 Pulau Pinang, Malaysia , usm.my

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Lay-Harn Gam

Lay-Harn Gam

School of Pharmaceutical Sciences Universiti Sains Malaysia Penang, Malaysia , usm.my

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Shaida Fariza Sulaiman

Shaida Fariza Sulaiman

School of Biological Sciences Universiti Sains Malaysia Penang, Malaysia , usm.my

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Sharif Mahsufi Mansor

Sharif Mahsufi Mansor

Centre of Drug Research Universiti Sains Malaysia Pulau Pinang, Malaysia , usm.my

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Zhari Ismail

Zhari Ismail

School of Pharmaceutical Sciences Universiti Sains Malaysia Penang, Malaysia , usm.my

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First published: 01 January 2011
Citations: 1

Abstract

FTIR spectroscopy was used together with multivariate analysis to distinguish six different species of Phyllanthus. Among these species P. niruri, P. debilis and P. urinaria are morphologically similar whereas P. acidus, P. emblica and P. myrtifolius are different. The FTIR spectrometer was used to obtain the mid-infrared spectra of the dried powdered leaves in the region of 400–4000 cm−1. The region of 400–2000 cm−1 was analyzed with four different pattern recognition methods. Initially, principal component analysis (PCA) was used to reduce the spectra to six principal components and these variables were used for linear discriminant analysis (LDA). The second technique used LDA on most discriminating wavenumber variables as searched by genetic algorithm using canonical variate approach for either 30 or 60 generations. SIMCA, which consisted of constructing an enclosure for each species using separate principal component models, was the third technique. Finally, multi-layer neural network with batch mode of backpropagation learning was used to classify the samples. The best results were obtained with GA of 60 gens. When LDA was run with the six wavenumbers chosen (1151, 1578, 1134, 609, 876 and 1227), 100% of the calibration spectra and 96.3% of the validation spectra were correctly assigned.

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