Volume 56, Issue 1 pp. 35-47
ORIGINAL ARTICLE
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3D printing in zoological systematics: Integrative taxonomy of Labrys chinensis gen. nov., sp. nov. (Nematoda: Tylenchomorpha)

Xue Qing

Corresponding Author

Xue Qing

Nematology Research Unit, Department of Biology, Ghent University, Ghent, Belgium

Correspondence

Xue Qing.

Email: [email protected]

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Wim Bert

Wim Bert

Nematology Research Unit, Department of Biology, Ghent University, Ghent, Belgium

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First published: 12 October 2017
Citations: 17
Contributing author: Wim Bert ([email protected])

Abstract

Three-dimensional printing technology has shown its importance in many fields. In this study, the potential of this technique in zoological systematics was assessed. For the first time, 3D printed models were incorporated in the description of a new genus as a complement to pictures and drawings to illustrate complex 3D structures and to be used in education. Hereby, we also tested the performances of different printing materials and suggest resin as the most suitable option for the zoological field. As a case study, Labrys chinensis gen. nov., sp. nov. was described using an integrative approach: detailed morphology based on light- and electron microscopy, phylogenetic position as revealed from two ribosomal RNA genes, generic traits were tested for homoplasy, and the intra- and interpopulation variations of four sampled populations were analyzed. The new genus belongs to the subfamily Tylenchinae, family Tylenchidae in the infraorder Tylenchomorpha. It is characterized by a unique labial plate that has four narrow lobes with tips detached from the adjacent cuticle, laterally broad elongated amphidial apertures, a strong sclerotized excretory duct, a round spacious postvulval uterine sac, and a spicule with a sharp protrusion at the blade.

1 INTRODUCTION

Integrative taxonomy was introduced as a comprehensive framework to delimit and describe taxa by gathering together information from different types of data and methodologies (Dayrat, 2005; Will, Mishler, & Wheeler, 2005) and has been considered as the most efficient and theoretically grounded approach to define robust species hypotheses (De Queiroz, 2007; Samadi & Barberousse, 2006). Commonly used complementary perspectives include phylogeography, comparative morphology, population genetics, ecology, development, and behavior. In this study, we introduce 3D printing to generic descriptions. Models are incorporated as a complement to pictures and drawings to illustrate complex 3D structures. Aside from taxonomy, we show its potential applications in linking research frontiers to education. We also compared the performance of printing materials and proposed the most suitable option.

Nematodes of the family Tylenchidae are abundant and diverse. Ecologically, they are important soil fauna which may constitute up to 30% of the nematodes in any given soil sample (Ferris & Bongers, 2006; Yeates & Bird, 1994). However, this group is taxonomically notoriously difficult as most species combine a low observational resolution with high intraspecific variability. As a result, many descriptions are ambiguous, especially if only based on light microscopy and/or based on a limited number of representatives, and several genera are polyphyletic (Qing, Decraemer, Claeys, & Bert, 2017). Here, we describe a new genus, Labrys chinensis gen. nov., sp. nov. Integrative approaches were applied to increase descriptive resolution: detailed morphology based on light microscopy (LM) and scanning electron microscopy (SEM); 3D models were generated and actually printed in 3D; selected generic traits were tested for phylogenetic homoplasy; four populations were sampled, and their intraspecific variation was analyzed. The results expanded our knowledge on Tylenchidae and provided an example for future species description in taxonomically difficult group.

2 MATERIALS AND METHODS

2.1 Sample collection and processing

A total of 38 individuals were collected in four locations in China (Table 1). Soil samples were incubated for 48 h on plastic trays lined with paper towels, and nematodes were subsequently concentrated using a sieve (25 μm opening). After removing water, nematodes were rinsed with DESS solution and transferred to glass vials for preservation and transportation. DESS-preserved specimens were rinsed several times with deionized water and then transferred to anhydrous glycerin for morphological analyses (Yoder et al., 2006).

Table 1. Sampling locations and GenBank accession numbers of four Labrys chinensis gen. nov., sp. nov. populations used in this study
Populations Individuals GenBank accession number Locations
28S 18S
P1 13

KY776621

KY776622

KY776623

KY776624

KY776632 Taibai, China (34°03′40″N, 107°41′ 9.6″E)
P2 8

KY776616

KY776617

KY776618

KY776619

KY776620

KY776633 Meixian, China (34°05′18.5″N 107°47′26.6″E)
P3 8

KY776611

KY776612

KY776613

KY776614

KY776615

KY776630 Shimen, China (29°56′08.3″N 110°47′13.1″E, 30°01′55.2″N, 110°39′54.0″E)
P4 9

KY776625

KY776626

KY776627

KY776628

KY776629

KY776631 Zhouzhi, China (107°47′9.4″E, 33°54′6.5″N)

2.2 Morphological analyses

Measurements and drawings were prepared manually with a drawing tube mounted on an Olympus BX51 DIC Microscope (Olympus Optical, Tokyo, Japan). The holotype of the new species was recorded as video clips mimicking LM multifocal observations (De Ley & Bert, 2002) and these are available online at http://nematodes.myspecies.info/gallery?f[0]=im_field_smg_galleries%3A734. Illustrations were prepared manually based on light microscope drawings and edited in Adobe Illustrator CS3 and Adobe Photoshop CS3. For SEM, specimens from DESS were gradually washed with water and postfixed with 2% PFA + 2.5% glutaraldehyde in 0.1M Sørensen buffer, then washed and dehydrated in ethanol solutions and subsequently critical point-dried with CO2. After mounting on stubs, the samples were coated with gold and observed with a JSM-840 EM (JEOL Ltd., Tokyo, Japan) at 12 kV.

2.3 Molecular phylogenetic analyses

Genomic DNA was extracted from DESS-preserved specimens with worm lysis buffer (Yoder et al., 2006). The single nematode was transferred to 40 mL worm lysis buffer and frozen for 10 min at 20°C. 1 μl proteinase K with the concentration of 1.2 mg/ml was added to the samples before incubation, 1 h at 65°C followed by 10 min at 95°C. The D2-D3 domains of 28S ribosomal RNA (28S) were amplified with primers D2A (5′-ACAAGTACCGTGAGGGAAAGT-3′) and D3B (5′-TGCGAAGGAACCAGCTACTA-3′). The partial 18S ribosomal RNA (18S) was amplified with primers TylF1 (5′-GCCTGAGAAATGGCCACTACG-3′) and TylR2 (5′-TGRTGACTCRCACTTACTTGG-3′). The PCR conditions were 30 s at 94°C, 30 s at 54°C, and 2 min at 72°C for 40 cycles. Newly obtained sequences were deposited in GenBank (Table 1). Alignments of the different genes were made using the Q-INS-i algorithm implemented in MAFFT v. 7.205 (Katoh & Standley, 2013), and alignments are available at TreeBASE (http://purl.org/phylo/treebase/phylows/study/TB2:S21277). The best-fitting substitution model was estimated using AIC in jModelTest v. 2.1.2 (Darriba, Taboada, Doallo, & Posada, 2012), and GTR + I + G was selected as best scored model for both markers. A maximum likelihood (ML) analysis was performed with 1000 bootstrap (BS) replicates under the GTRCAT model using RAxML 8.1.11 (Stamatakis, Hoover, & Rougemont, 2008), and a Bayesian inference (BI) was carried out with the GTR + I + G model using MrBayes 3.2.3 (Ronquist et al., 2012). Analyses were run for 5 × 106 generations, and Markov chains were sampled every 100 generations. Burnin was arbitrarily chosen to be 25% of the results and evaluated using a generation/log-likelihood scatter plot. The ML and BI analyses were performed at the CIPRES Science Gateway (Miller, Pfeiffer, & Schwartz, 2010). Gaps were treated as missing data for all phylogenetic analysis. All trees were visualized with TreeView v. 1.6.6 (Page, 1996). ML BS values and Bayesian posterior probabilities (PP) were summarized on the consensus tree using Adobe Illustrator CS3.

2.4 Homoplasy test

To provide an objective estimation on evolutionary conservation of lip morphology and its robustness as a generic delimitation marker, we calculated the homoplasy indices, the retention index (RI), the consistency index (CI), the observed number of character transitions (obs.), and the permutation of character values (perm.) (Maddison & Slatkin, 1991) on the BI consensus tree. We consider high RI and CI values (≥0.80) or low obs./perm. ratio (≤0.45) to be indicative that the analyzed traits evolved slowly enough to retain phylogenetic information and low homoplasy. All analyses were performed in Mesquite 3.10 (Maddison & Maddison, 2016).

2.5 Analyses of population genetic structure

To visualize the genetic structure at the population level and to display conflicts in the data by taking into account incompatible phylogenetic signals, we generated phylogenetic networks by employing the NeighborNet algorithm (Bryant & Moulton, 2004) with uncorrected pairwise p-distances in the program SplitsTree v4.10 (Huson & Bryant, 2006). With 1000 pseudo-replicates (result only shown between populations), bootstrap analysis was conducted to assess the support for splits in the network. We also estimated the nucleotide diversity (θπ and θS) within population and genetic variation between the four populations by calculating the fixation index (Fst). All diversity and demographic analyses were performed using Arlequin 3.1 (Excoffier, Laval, & Schneider, 2005).

2.6 3D modeling and printing

To visualize important morphological characters and facilitate zoological education, 3D models were reconstructed in Autodesk Maya following the procedure of Qing, Sánchez-Monge, and Bert (2015). Next to the new genus, three other tylenchid genera (Tylodorus sp., Cephalenchus sp., and Cucullitylenchus sp.) were modeled to visualize intrafamily variations of the morphology of lip regions and to test printing performance across a variety of nematode taxa. The constructed models were converted to the stl format, and MiniMagics 3.0 was used to optimize the models. Each model was printed using three commercial materials: Polylactic acid (PLA) and acrylonitrile butadiene styrene (ABS) were printed by MakerBot Replicator 2 using fused deposition modeling (FDM) method, while resin was printed by RSPro 450 Industrial 3D printer using the stereolithography method. All the model files and the printing video/pictures are freely available at worldwide 3D designer community Thingiverse (www.thingiverse.com/thing:2418910), allowing our designs to be discussed and improved by the scientific community.

3 RESULTS

3.1 Phylogenetic analysis and homoplasy tests

In both analyses, the tree topologies regarding the major clades of Tylenchidae are congruent with recently published studies (Atighi et al., 2013; Qing et al., 2015, 2017). The monophyly of all Labrys chinensis gen. nov., sp. nov. populations is fully supported (BI = 1, BS = 100) across the two genes. The new genus is sister to a clade containing Filenchus + Malenchus based on 28S (BI = 1, BS = 98) or to Filenchus misellus (Andrássy, 1958) Raski & Geraert, 1987 based on 18S (BI = 1, BS = 91) (Figures 1 and 2). As already noted by Qing et al. (2017), the genus Filenchus is polyphyletic and comprises at least three clades. Among these clades, F. misellus and F. chilensis Raski & Geraert, 1987 formed a separate clade, separated from the type species of the genus (F. vulgaris (Brzeski, 1963) Lownsbery & Lownsbery, 1985). This separation is also morphologically supported by their unique amphidial aperture pattern (Brzeski & Sauer, 1982; Karegar & Geraert, 1998; Torres & Geraert, 1996). Therefore, F. misellus and F. chilensis can be designated as one or even two separate genus/genera. However, this phylogenetic grouping is based on only few GenBank sequences without morphological vouchers, limiting the validity of further taxonomic actions.

Details are in the caption following the image
Fifty percent majority rule consensus tree of Bayesian phylogeny analysis of the 18S rRNA gene. Branch support is indicated in the following order: PP value of BI analysis/BS value of ML analysis. Illustrations indicate lip region arrangement in each clade, and codes of each type (I-VII) follow Geraert and Raski (1987). I: front plate laterally elongated, undivided, carries all the sensillae. The amphidial apertures are entirely within the plate; II-a: Amphidial apertures are not confined to the oral plate but continue on the lateral side as longitudinal slits. The end-on view is round to quadrangular; II-b: Similar with II-a except for a dorso-ventrally flattened end-on view; III: slit-like amphidial apertures confined to the oral plate but the slits are dorso-ventrally directed; IV: Offset oral disk, the cephalic region is dorso-ventrally flattened. The amphidial aperture is very long and mostly sinuous, it starts at oral disk and continues longitudinally on the narrow lateral side of the cephalic region; V-a: amphidial slits start immediately at the oral disk, laterally directed but are only found on the front end of the cephalic region. The amphidial apertures are surrounded by a plate that bears the four cephalic papillae, that plate is constricted dorso-ventrally to form lobes; V-b: similar with V-a but labial plate is constricted to form a cleft and with seta; VI: labial plate undivided, four prominent cephalic papillae dome-shaped, outside of anterior surface. Amphidial apertures start between or outside the four cephalic papillae and are simple oblique slits or have an inverted V-shape; VII: with very small pore-like amphidial apertures. The lip region of Labrys chinensis gen. nov., sp. nov. is different from all known type and thus considered as VIII
Details are in the caption following the image
Fifty percent majority rule consensus tree of Bayesian phylogeny analysis of D2-D3 domain of 28S rRNA gene. Branch support is indicated in the following order: PP value of BI analysis/BS value of ML analysis. The lip region arrangement code in each clade corresponds to Figure 1

Tylenchidae taxonomy is controversial and problematic with several invalid or homoplastic generic characters (Qing et al., 2017) implying that an objective selection for morphological characters that define phylogenetic clades is necessary. In this study, homoplasy tests of lip region pattern morphology mapped on phylogenetic trees based on the in 18S and 28S sequences indicated strong phylogenetic signals (RI > 0.85, CI ≥ 0.80, obs/permu < 0.45) (Table 2), indicating that lip morphology is a relatively conserved character that can be used as a generic character.

Table 2. Homoplasy test for lip region arrangement
18S 28S
RI 0.91 0.96
CI 0.80 0.87
obs. 10 8
perm. 28 29
obs/perm. 0.36 0.27
  • RI, retention index; CI, consistency index; obs, observed number of character transitions; permu, permutation number of character transitions.

3.2 Population structure

The NeighborNet analysis based on the alignment of the 28S gene revealed four major clades (Figures 3a), supported by high interpopulation genetic divergence (Fst > 0.8) (Table 3) and concordant with the geographic origin of the respective samples: Population No. 1 (P1), Population No. 2 (P2), and Population No. 4 (P4) that were sampled are ca. 10–20 km apart from each other, and Population No. 3 (P3) is distantly separated from the other populations with around 600 km (Figures 3b) between them. The most interesting general result is the presence of multiple lineages (P1, P2, P4) occurring in a relatively small geographic region. Although the divergence is relatively low, and network analyses show that historical admixture across the range may exist, all lineages are well separated. The intrapopulation nucleotide analyses also shows diversity, the lowest divergence in P1 (θπ = 0.50, θS = 0.54) and the highest in P3 (θπ = 9.8, θS = 2.9). However, all populations do not show morphological or morphometrical inter- or intrapopulation differences.

Details are in the caption following the image
Phylogenetic network applied to four Labrys chinensis gen. nov., sp. nov. populations and their geographic distributions. (a) Phylogenetic network applied to four parsimoniously informative (PI) sites using the NeighborNet algorithm. Bootstrap values are indicated between populations. (b) Geographic distribution. The black dashed rectangle in the upper right indicates the location in China. Wide gray dashed line in the main map represents the Qinling Mountains
Table 3. Nucleotide diversity of 28S rDNA among four recovered populations (P1-P4) of Labrys chinensis gen. nov., sp. nov. In bold is nucleotide diversity between populations measured by Fst. In the diagonal: nucleotide diversity within each population measured by θπ and θS, indicated in order of θπS. All FST estimates were highly significant at p < .05
P1 P2 P3 P4
P1 0.50/0.54
P2 0.89 1.4/0.96
P3 0.92 0.93 9.8/2.9
P4 0.94 0.94 0.93 2.8/1.9

3.3 Taxonomy

3.3.1 Labrys gen. nov

Description

Same as species description.

Diagnosis and relationship

The new genus belongs to the subfamily Tylenchinae, family Tylenchidae. It is characterized by a unique labial plate that has four narrow lobes with tips detached from the adjacent cuticle, visible in LM as two small protruding lips at the anterior end (Figures 4a, b and 5c, d). Geraert and Raski (1987) distinguished seven patterns of the morphology of the lip region in Tylenchidae. The pattern in Labrys gen. nov. differs from all known lip patterns in Tylenchidae and is here considered as an eighth unique pattern. Beside, the wide, laterally broad, and elongated amphidial aperture (Figure 4d), the spicule with a sharp protrusion at the blade (Figure 4m), and a round spacious postvulval uterine sac (PUS) are also very rare in Tylenchidae. The new genus resembles the genera Allotylenchus, Lelenchus, Filenchus, and Polenchus in general appearances, for a detailed comparison see Table 4. The genus Sakia is also similar to the presented new genus (broad cap-like cephalic region and a sclerotized excretory duct), although its validity is still in discussions (Fortuner & Raski, 1987; Geraert, 2008; Husain, 1972; Siddiqi, 1986, 2000). The type species S. typica Khan (1964) was described without drawings but still shows several differences: amphidial aperture small, oval slit (vs broad and elongated aperture, obvious in laterally view), stylet with cone equal in length to shaft (vs shaft two times longer than cone), spermatheca not set-off (vs spermatheca set-off), and a reduced PUS (vs a round spacious PUS). Other species of Sakia all have the anterior end without protruding lips, spicule without sharp protrusion and are different in lateral incisures (absent/four in Sakia vs two in Labrys gen. nov.).

Details are in the caption following the image
Light microscopy pictures of Labrys chinensis gen. nov., sp. nov. (a–e) female cephalic region, arrow point lateral view of amphidial aperture. (f) Excretory pore and duct. (g, h) Vulva. (i) Ventral view of excretory pore. (j) Ventral view of vulva. (k) Ventral view of cloacal. (l, m) Ventral view of spicule, arrow point sharp protruding in spicule blade. (n) Male tail tip. (o, p) Female tail tip. (q, r) Ventral view of spicule. (s, u) Female habitus. (t) Male habitus
Details are in the caption following the image
Line drawing of Labrys chinensis gen. nov., sp. nov. (a, b) Female anterior body. (c–e) Female cephalic region. (f) Excretory pore and sclerotized duct. (g) Male tail tip. (h) Female tail tip. (i) Male tail. (j) Female tail. (k) Vulva. (l) Anus. (m) Cloacal region. (n) Female gonad. (o, p) Lateral view of spicule. (q) Ventral view of spicule. (r) Male habitus. (s, t) Female habitus
Table 4. Comparison of Labrys chinensis gen. nov. to other related genera in Tylenchidae
Genera Characters
Anterior end Amphideal fovea Median bulb Flap in Vulva Excretory duct Spicule blade
Labrys gen. nov. Two lips protruding Indistinct Elongated fusiform Indistinct Sclerotized Sharply protruding
Allotylenchus Continuous Indistinct Well developed Large Sclerotized Less protruding
Polenchus Continuous Indistinct Well developed Indistinct Weak Less protruding
Filenchus Continuous Indistinct Well developed to elongated fusiform Indistinct Weak Less protruding
Lelenchus Continuous Pouch-like Elongated fusiform Indistinct Weak Less protruding
Sakia Continuous Indistinct Elongated fusiform Indistinct Sclerotized Less protruding

Etymology

The selected genus name is derived from the shape of the labial plate, which resembles a symmetrical double-bitted axe, one of the famous symbols of Greek civilization.

Type and only species

Labrys chinensis gen. nov., sp. nov.

3.3.2 Labrys chinensis gen. nov., sp. nov. (Figures 4-6, Table 5)

Details are in the caption following the image
Scanning electron microscopy of Labrys chinensis gen. nov., sp. nov. (a, b) en face view of cephalic region. (c) Ventral view of anterior body. Arrow indicates excretory pore. (d) Lateral view of anterior body. (e) Ventral view of vulva. (f, g) Lateral view of vulva. (h, i) Female tail. Scale bar: a, b = 1 μm; c, d, f, g = 5 μm; e, h, i = 10 μm
Table 5. Morphometric data for Labrys chinensis gen. nov., sp. nov. All measurements are in μm and in the form: mean ± SD (range)
Characters Female Male
Holotype Paratypes Paratypes
n 9 4
L 636 616 ± 24 (580–637) 611 ± 12 (602–627)
a 41.6 44.1 ± 3.9 (37.7–48.7) 35.1 ± 1.6 (33.7–37.4)
b 6.9 6.6 ± 0.6 (5.4–7.3) 6.2 ± 0.38 (5.6–6.5)
c 3.8 3.8 ± 0.23 (3.5–4.4) 3.6 ± 0.20 (3.4–3.8)
c' 17.3 18.0 ± 2.1 (13.3–20.3) 17.6 ± 2.9 (14.8–21.5)
V 56.5 56.6 ± 1.5 (53.9–59.8)
V' 76.5 77.1 ± 1.0 (75.0–78.1)
Tail length/vulva-anus distance 1.5 1.6 ± 0.12 (1.3–1.7)
Body diam. 15 14 ± 1.3 (12–16) 17 ± 0.91 (16–19)
Stylet 8.5 9.3 ± 0.42 (8.9–10) 9.4 ± 0.54 (8.7–10)
MB 49 43 ± 4.2 (38–51) 44 ± 1.2 (44–46)
Excretory pore to anterior end 90 84 ± 4.0 (76–87) 80 ± 3.8 (76–84)
Excretory duct length 19 20 ± 4.1 (15–25) 22 ± 3.3 (18–26)
Pharynx 92 95 ± 9.0 (82–108) 99 ± 5.0 (96–106)
Nerve ring 67 69 ± 8.8 (58–89) 70 ± 4.8 (64–76)
Anus width/cloacal width 9.6 9.2 ± 0.83 (8.3–11) 9.7 ± 0.87 (8.6–11)
Spicule  – 16 ± 1.3 (14–17)
Postuterine sac/gubernaculum 15 15 ± 1.2 (13–17) 4.8 ± 0.45 (4.4–5.4)
Tail 166 164 ± 12 (132–171) 169 ± 13 (159–186)

ZooBank (zoobank.org) identifier: CE6004B6-D242-4989-9ABE-1F000FA2AEFE.

Holotype

Female, from population P1, recovered from soil underneath Quercus aliena from Taibai (34°03′40″N, 107°41′ 9.6″E), China, at an altitude of 1963 m a.s.l. Deposited at the Ghent University Museum, Zoology Collections, collection number UGMD 104322.

Paratypes

Four females and one male paratypes collected from the same location and same sample of holotype. Deposited at the Ghent University Museum, Zoology Collection, collection number UGMD 104323, Ghent University, Belgium. Additional paratypes are available in the UGent Nematode Collection (slide UGnem-162) of the Nematology Research Unit, Department of Biology, Ghent University, Belgium.

Type habitat and locality

Type population P1 from soil underneath Quercus aliena from Taibai (34°03′40″N, 107°41′ 9.6″E), China, at an altitude of 1963 m.a.s.l. Three other populations were found in different locations in China (Table 1).

Description

Female: body slender, straight to ventrally arcuate. Cuticle appearing as bright lining in stereomicroscopy, smooth in LM but finely striated in SEM. Lateral field distinct, an elevated ridge forming two incisures, starts at level of metacorpus. Cephalic region rounded, continuous, framework weak, not sclerotized. Labial plate offset and constricted dorso-ventrally, forming four lobes, tapering toward tip and detached from adjacent cuticle (Figure 6a, b; 1 type VIII). Labial papillae six, arranged as a circle in oral disk. Cephalic papillae invisible. Amphidial apertures broad slits, laterally elongated, confined in first annulation after labial plate, edge of apertures thicker than adjacent cuticle forming a elevated ring (Figure 6a, b). Stylet knobbed, shaft about two times longer than cone. Dorsal pharyngeal gland orifice close to stylet base. Excretory pore wide 2.0–2.5 μm, excretory duct long, heavily sclerotized, generally at the level of pharyngo-intestinal junction. Deirids at the level of basal bulb. Hemizonid just above excretory pore. Corpus cylindroid, metacorpus elongated fusiform, its cuticular valve weak, and gradually transiting to cylindrical isthmus. Basal bulb spindle-shaped. Vulva with small flap, one annulus wide. Vagina wall thin, perpendicular to body. Postvulval uterine sac (PUS) round, occupying full body width, one body diameter long. Female gonoduct monodelphic, prodelphic. Ovary outstretched, oocytes in single row. Spermatheca offset, filled with spherical sperm cells. Uterus quadricolumellate, probably with five or six cells in each row.

Male: Bursa ad-cloacal, slightly crenated. Spicules with velum, proximal part of blade sharply protruding, gubernaculum simple. Tails filiform, ending in a rounded terminus.

Etymology

Species name is given after China, where it was recovered.

4 DISCUSSION

Currently, 44 genera are recognized in the family Tylenchidae: 42 genera as listed by Geraert (2008), one new genus recently described by Yaghoubi et al. (2016), and one by the present study. In this study, integrative approaches were used to describe Labrys chinensis gen. nov., sp. nov. Although the phylogeny of Tylenchidae remains unresolved, current results extended its diversity and highlighted the importance of detailed morphological analyses in such taxonomically difficult group. Given that many of the generic characters are only obvious in SEM (e.g., Labial patterns), new species descriptions should not solely be based on LM.

The morphology- and molecular phylogeny-based homoplasy test supports lip morphology to be informative, concurring with previous morphological observations (Geraert & Raski, 1987; Sher & Bell, 1975). Therefore, more attentions need to be given on lip region (especially the shape and position of amphidial aperture) in future taxonomy studies. Nevertheless, a combination of different characters is necessary, as congruence may still occur in lip morphology (lip pattern II-a).

The implementation of molecular tools led to discovery unexpected diversity in a small spatial scale. This suggests that either the contemporary gene flow was interrupted for an unknown reason or that ancestral polymorphisms have been retained. Alternatively, these populations may represent several cryptic species that morphologically similar. Cryptic species have been identified in various nematodes: plant-parasitic, entomoparasitic, vertebrate-parasitic, and bacteria feeding (Jorge, Perera, Carretero, James Harris, & Roca, 2013; Kanzaki, Li, Lan, & Giblin-Davis, 2014; Palomares-Rius, Cantalapiedra-Navarrete, & Castillo, 2014; Sudhaus & Kiontke, 2007). These species only have very minute morphological differences which may otherwise be ignored without integrative approaches. In present study, detailed morphology and morphometric cannot recognize any interpopulation difference, but they can still be separated species, differing in invisible characters (e.g., mating behavior and ecological constraints) or morphology that cannot access by current techniques.

Although 3D printing technology has been used since the 1980s, it has only recently gained real momentum, as the technology matures and awareness grows. Driven by new applications, the “printable” category keeps expanding into many fields such as medicine, architecture, education, fashion, manufacturing, even food (Lombardi, Hicks, Thompson, & Marbach-Ad, 2014; Murphy & Atala, 2014; Petrick & Simpson, 2013; Qing et al., 2015; Sun, Peng, Yan, Fuh, & Hong, 2015; Thomas, Hiscox, Dixon, & Potgieter, 2016). Within zoology, it has already been showing great potential in functional morphology, pest detection, anatomy, and physiology (Domingue et al., 2015; Greco et al., 2014; Igic et al., 2015; Porter, Adriaens, Hatton, Meyers, & McKittrick, 2015; Thomas et al., 2016). Here, we extend the application of 3D printing to the field of taxonomy and describe for the first time a new taxon together with a printed model (Figure 7). Although the accuracy of our models is not comparable to 3D reconstructions based on serial transmission electron microscopy (TEM) sections or electron tomography techniques, the models are useful and time-efficient complements to pictures and drawings of species descriptions to illustrate complex 3D structures. Future taxonomical applications can also be extended to virtual reality approaches that allow observation and dissection without damaging precious specimens, which represents a promising direction for both taxonomy and education. Therefore, as we add 3D printing to the toolkit of taxonomical research, we also underline the relevance of its development as a synergistic disciplinary link of frontier zoology research and zoological education.

Details are in the caption following the image
Three-dimensional models (a–h) and printed resin models (i–p) of representatives of other genera in Tylenchidae. (a, b, i, j) Labrys chinensis gen. nov., sp. nov.; (c, d, k, l) Cucullitylenchus sp.; (e, f, m, n) Cephalenchus sp.; (g, h, o, p) Tylodorus sp. All models were printed by white resin in a height of 4 cm, performances of other materials see: http://nematodes.myspecies.info/gallery?f[0]=im_field_smg_galleries%3A734. Models are freely available to download from: https://www.thingiverse.com/thing:2418910

In this study, we also experienced the importance of selecting the optimal printing materials to achieve appropriate model quality. ABS and PLA are two effective commercial materials that combine mechanically desirable performance and low cost, whereas resin is considered a more advanced material that delivers the highest quality output but at a considerably higher price. Our tests based on four taxa reveal that the thermoplastic polymers ABS and PLA gave similarly acceptable coarse surfaces in 8-cm models, while all labial details were completely lost in 4-cm print (see http://nematodes.myspecies.info/gallery?f[0]=im_field_smg_galleries%3A734). Conversely, resin provides highly resolved details, that is, all papillae are clearly visible, even when model size is reduced to 4 cm (Figure 7i–p). Therefore, such high quality in small size print can compensate for the less competitive price of resin (usually 1.5 to two times that of PLA). Moreover, resin can be printed in light color, semi-opaque color, or even transparent which facilities the visibility of internal structures. In conclusion, resin is highly recommended for zoological anatomy education and research while PLA/ABS is also useful but only for larger print size (8 cm or more).

ACKNOWLEDGEMENTS

We thank Marjolein Couvreur for the SEM analysis. The first author thanks the China Scholarship Council (CSC) for providing a Ph.D. grant. This work was also supported by a special research fund UGent 01N02312.

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