Base-specific Photocleavage of DNA Induced by Pazelliptine Sensitization: Study of the Mechanism by Time-resolved Absorption and Fluorescence
Corresponding Author
Marie-Pierre Fontaine-Aupart
Laboratoire de Photophysique Moléculaire, UniversitéParis-Sud, Orsay, France
*Laboratoire de Photophysique Moléculaire, U.P.R. 3361 CNRS, Bâtiment 213, Université Paris-Sud, 91405 Orsay Cedex, France. Fax: 01 69 15 67 77; e-mail:[email protected]Search for more papers by this authorEric Renault
Laboratoire de Photophysique Moléculaire, UniversitéParis-Sud, Orsay, France
Search for more papers by this authorChristine Videlot
Laboratoire de Photophysique Moléculaire, UniversitéParis-Sud, Orsay, France
Search for more papers by this authorFrancis Tfibel
Laboratoire de Photophysique Moléculaire, UniversitéParis-Sud, Orsay, France
Search for more papers by this authorRobert Pansu
Laboratoire de Photophysique et Photochimie Supramoléculaires et Macromoléculaires, E.N.S Cachan, Cachan, France
Search for more papers by this authorMichel Charlier
Centre de Biophysique Moléculaire, Orléans, France
Search for more papers by this authorPascal Pernot
Laboratoire de Physico-Chimie des Rayonnements, Orsay, France
Search for more papers by this authorCorresponding Author
Marie-Pierre Fontaine-Aupart
Laboratoire de Photophysique Moléculaire, UniversitéParis-Sud, Orsay, France
*Laboratoire de Photophysique Moléculaire, U.P.R. 3361 CNRS, Bâtiment 213, Université Paris-Sud, 91405 Orsay Cedex, France. Fax: 01 69 15 67 77; e-mail:[email protected]Search for more papers by this authorEric Renault
Laboratoire de Photophysique Moléculaire, UniversitéParis-Sud, Orsay, France
Search for more papers by this authorChristine Videlot
Laboratoire de Photophysique Moléculaire, UniversitéParis-Sud, Orsay, France
Search for more papers by this authorFrancis Tfibel
Laboratoire de Photophysique Moléculaire, UniversitéParis-Sud, Orsay, France
Search for more papers by this authorRobert Pansu
Laboratoire de Photophysique et Photochimie Supramoléculaires et Macromoléculaires, E.N.S Cachan, Cachan, France
Search for more papers by this authorMichel Charlier
Centre de Biophysique Moléculaire, Orléans, France
Search for more papers by this authorPascal Pernot
Laboratoire de Physico-Chimie des Rayonnements, Orsay, France
Search for more papers by this authorAbstract
The intercalating antitumoral drug pazelliptine (PZE) is able to photosensitize the formation of single- and double-strand breaks in supercoiled plasmid DNA and selective photocleavage at guanine residues is observed. In order to understand the mechanisms of DNA cleavage mediated by the photoexcited drug, singlet and triplet excited-state processes in PZE complexed with poly(dA-dT)-poly(dA-dT), poly(dG-dC)-poly(dG-dC) and calf thymus DNA have been investigated by means of single photon counting fluorescence decay and transient absorption techniques. For each complex, three different binding sites have been identified, due to the existence of different geometric structures of the drug in the ground state. For one type of binding site, a proton transfer reaction occurs in the singlet excited state whatever the nucleic acid environment. In contrast, the relaxation dynamics for the other two sites are found to depend widely upon the type of polynucleotide in which the drug has been intercalated. From the results of this study, we suggest that the photodynamic action of PZE does not originate from excitation of the drug in the environment of G-C base pairs but is initiated from its triplet state that reacts by electron transfer with the adenine bases. The specificity of cleavage could be the result of subsequent reactions leading to guanine oxidation.
References
- 1 Kansal, V. K. and P. Potier (1986) The biogenetic, synthetic and biochemical aspects of ellipticine, an antitumor alkaloid. Tetrahedron 42, 2389–2408.
- 2 Auclair, C. and C. Paoletti (1981) Bioactivation of the antitumor drug 9-hydroxyellipticine and derivatives by a peroxidase-hy-drogen peroxide system. J. Med. Chem. 24, 289–295.
- 3 Ruckdeschel, J. C., S. P. Modi, W. El-Hamouly, E. Portuese and S. Archer (1992) JV-methylcarbamate derivatives of ellipticine and olivacine with cytotoxic activity against four human lung cancer cell lines. J. Med. Chem. 35, 4854–4857.
- 4 Nguyen, C. H., E. Bisagni, F. Lavelle, M. C. Bissery and C. Huel (1992) Synthesis and antitumor properties of new 4-meth-yl-substituted-pyrido[4,3-b]indoles (g-carbolines). Anti-Cancer Drug Design 7, 219–233.
- 5 Moustacchi, E., V. Favaudon and E. Bisagni (1983) Likehood of the new antitumoral drug 10-[g-diethylaminopropylamino]-6-methyl-5H-pyrido[3′,4′:4,5]pyrrolo[2,3-g]isoquino-line (BD40), a pyridopyrroloisoquinoline derivative, to induce DNA strand breaks in vivo and its nonmutagenicity in yeast. Cancer Res. 43, 3700–3706.
- 6 Vilarem, J., J. Y. Charcosset, F. Primaux, M. P. Gras, F. Calvo and C. J. Larsen (1985) Differential effects of ellipticine and AZA-analogue derivatives on cell cycle progression and survival of BALB/c 3T3 cells released from serum starvation or thymidine double block. Cancer Res. 45, 3906–3911.
- 7 Pierson, V., A. Pierre, Y. Pommier and P. Gros (1988) Production of Proteine-associated DNA breaks by 10-[g-diethylami-nopropylamino]-6-methyl-5H-pyrido[3′,4′:4,5]pyrrolo[2,3-g]isoquinoline in culture L1210 cell and in isolated nuclei: comparison with other topoisomerase II inhibitors. Cancer Res. 48, 1404–1409.
- 8 Perrouault, L., U. Asseline, C. Rivalle, N. T. Thuong, E. Bisagni, C. Giovannangeli, T. Le Doan and C. Hélene (1990) Sequence-specific artificial photoinduced endonucleases based on triple helix-forming oligonucleotides. Nature 344, 358–360.
- 9 Renault, E., M. P. Fontaine-Aupart, F. Tfibel, M. Gardés-Albert and E. Bisagni (1997) Spectroscopic study of the interaction of pazelliptine with nucleic acids. J. Photchem. Photobiol. B Biol. 40, 216–227.
- 10 Knapp, C., J. P. Lecomte, A. Kirsch De Mesmaeker and G. Orellana (1996) Photoinduced electron transfer from nucleotides to DNA intercalating viologens. A study by laser-flash photolysis and spectroelectrochemistry. J. Photochem. Photobiol. B Biol. 36, 67–76.
- 11 Enescu, M. and L. Lindqvist (1995) Excited state deactivation mechanism in methylene blue-nucleotide complexes: a picosecond transient absorption study. J. Phys. Chem. 99, 8405–8411.
- 12 Shafirovich, V. Y., S. H. Courtney, N. Ya and N. E. Geacintov (1995) Photon-coupled photoinduced electron transfer, Deuterium isotope effects and fluorescence quenching in non-covalent benzo[a]pyrenetetraol-nucleoside complexes in aqueous solutions. J. Am. Chem. Soc. 117, 4920–4929.
- 13 Enescu, M., M. P. Fontaine-Aupart, B. Soep and F. Tfibel (1998) Interaction of the antitumoral drug pazelliptine with polynucleotides: a subpicosecond transient absorption study. J. Phys. Chem. 102, 3631–3636.
- 14 Ducrocq, C., E. Bisagni and J. M. Lhoste (1979) Synthesis of l substituted dipyrido[4,3-b][3,4-f]indoles. J. Chem. Soc. 1, 142–145.
- 15 Renault, E. (1996) Dynamique réactionnelle de ľétat excité triplet et des espéces radicalaires de 1′antitumoral pazelliptine en milieu aqueux et vis à vis des acides nucléiques: une étude par photolyse laser et radiolyse puisée. Thesis, University Paris V, Paris.
- 16 Wells, R. D., J. E. Laarson, R. C. Grant, B. E. Shortle and C. R. Cantor (1970) Physico-chemical studies on polydeoxyribo-nucleotide containing defined repeating nucleotide sequence. J. Mol. Biol. 54, 465–497.
- 17 Pohl, F. M. and T. M. Jovin (1972) Salt-induced co-operative conformational change of a synthetic DNA: equilibrium and kinetic studies with poly (dG-dC). J. Mol. Biol. 67, 375–396.
- 18 Lippart, S. J., K. W. Jenette, H. C. Varsiliades and W. R. Bauer (1974) Metallo intercalation reagents: 2-hydroxyethanethiola-to(2,2′,2-terpyridyl)platinium II monocation binds strongly to DNA by intercalation. Proc. Natl. Acad. Sci. USA 71, 3839–3842.
- 19 Sambrook, J., E. F. Frisch and T. Maniatis (1989) Molecular Cloning. A Laboratory Manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor , NY .
- 20 Isabelle, V., J. Franchet-Beuzit, R. Sabattier, B. Laine, M. Spotheim-Maurizot and M. Charlier (1993) Radioprotection of DNA by a DNA-binding protein: MCI chromosomal protein from the archaebacterium Methanosarcina sp. CHTI55. Int. J. Radial. Biol. 63, 749–758.
- 21 Fontaine-Aupart, M.-P., M. Frejacques, E. Renault, C. Ferradini, M. Gardes-Albert, B. Hickel, C. Rivalle and E. Bisagni (1993) Two-photon ionisation of the antitumor drug pazelliptine (BD40) by 355 nm laser photolysis. J. Photochem. Photobiol. B 21, 203–209.
- 22 Spotheim-Maurizot, M., M. Charlier and R. Sabatier (1990) DNA radiolysis by fast neutrons. Int. J. Radiat. Biol. 57, 301–313.
- 23 Franchet-Beuzit, J., M. Spotheim-Maurizot, R. Sabatier, B. Bla-zy-Baudras and M. Charlier (1993) Radiolytic footprinting. Beta rays, gamma photons and fast neutrons probe DNA-protein interactions. Biochemistry 32, 2104–2110.
- 24 Maxam, A. and W. Gilbert (1980) Sequencing end-labeled DNA with base specific chemical cleavages. Methods Enzymol. 65, 499–560.
- 25 Laguitton-Pasquier, H., R. Pansu, J. P. Chauvet, A. Collet, J. Faure and R. Lapouyade (1996) The charge transfer state of excited bianthryl and a derivative: solvatochromism, emission CT spectra broadening in homogeneous solvents. Chem. Phys. 212, 437–455.
- 26 Donzel, B., P. Gauduchon and P. Wahl (1974) Study of the conformation in the excited state of two tryptophanyl diketo-piperazines. J. Am. Chem. Soc. 96, 801–808.
- 27 Beechem, J. M., M. Ameloot and L. Brand (1985) Global analysis of fluorescence decay surfaces: excited-state reactions. Chem. Phys. Lett. 120, 466–472.
- 28 Löfroth, J.-E. (1986) Time-resolved emission spectra, decay-associated spectra, and species associated spectra. J. Phys. Chem. 90, 1160–1168.
- 29 Henry, E. R. and J. Hofrichter (1992) Singular value decomposition: application to analysis of experimental data. Methods Enzymol. 210, 129–192.
- 30 Bretthorst, L. (1989) Bayesian Spectrum Analysis and Parameter Estimation. Lecture Notes in Statistics 48. Springier-Verlag, New York .
- 31 Ameloot, M., N. Boens, R. Andriessen, V. Van der Bergh and F. C. De Schryver (1992) Compartmental analysis of fluorescence decay surfaces of excited-state processes. Methods Enzymol. 210, 315–340.
- 32 Grinwald, A. and I. Z. Steinberg (1974) On the analysis of fluorescence decay kinetics by the method of least-squares. Anal. Biochem. 59, 583–598.
- 33 McKinnon, A. E., A. G. Szabo and D. R. Miller (1977) The deconvolution of photoluminescence data. J. Phys. Chem. 81, 1564–1570.
- 34
Vandevender, W. H. and
K. H. Haskell (1982) SLATEC common mathematical library.
SIGNUM Newslett.
17, 16–21; routine DBOLS.
10.1145/1057594.1057595 Google Scholar
- 35 Bensasson, R., C. Land and R. G. Truscott (1993) Excited States and Free Radicals in Biology and Medicine. Oxford University Press, New York .
- 36 Husain, I., J. Griffith and A. Sancar (1988) Thymine dimers bend DNA. Proc. Natl. Acad. Sci. USA 85, 2558–2562.
- 37 Koch, T., J. Dezz-Ropp, S. G. Sligar and G. B. Schuster (1993) Photocleavage of DNA: irradiation of quinone containing reagents converts supercoiled to linear DNA. Photochem. Photobiol. 58, 554–558.
- 38 Tourbez-Perrin, M., F. Pochon, C. Ducroq, C. Rivalle and E. Bisagni (1980) Intercalative binding to DNA of new antitumoral agents dipyrido[4,3-b] [3,4-f] indoles. Bull. Cancer 67, 9–13.
- 39 Bailly, C., C. O. Uegin, C. Rivalle, E. Bisagni, J. P. Henichart and M. J. Waring (1990) Sequence selective binding of an el-lipticine derivative to DNA. Nucleic Acids Res. 18, 6283–6291.
- 40 Walrant, P., R. Santus and M. Charlier (1976) Role of complex formation in the photosensitized degradation of DNA induced by N-formylkynurenine. Photochem. Photobiol. 24, 13–19.
- 41 Freifelder, D. and B. Trumbo (1969) Matching of single-strand breaks to form double-strand breaks in DNA, Biopolymers 7, 681–693.
- 42 Spotheim-Maurizot, M., J. Franchet, R. Sabattier and M. Charlier (1991) DNA radiolysis by fast neutrons. II. Oxygen, thiols and ionic strength effects. Int. J. Radiat Biol. 59, 1313–1324.
- 43 Burrows, C. J. and J. G. Muller (1998) Oxidative nucleobase modifications leading to strand scission. Chem. Rev. 98, 1171–1151.
- 44 Armitage, B. (1998) Photocleavage of nucleic acids. Chem. Rev. 98, 1171–1200.
- 45 Goërner, H. (1994) Photochemistry of DNA and related bio-molecules: quantum yields and consequences of photoioniza-tion. J. Photochem. Photobiol. B Biol 26, 117–139.
- 46
Fontaine-Aupart, M. P.,
H. Lagitton-Pasquier,
R. Pansu,
L. Brian,
E. Renault,
M. Marden,
C. Rivalle and
E. Bisagni (1996) Proton and charge transfer in the intercalating antitumor drug pazelliptine.
J. Chem. Soc. Perkin Trans.
2, 8, pp.
1767–1774.
10.1039/p29960001767 Google Scholar
- 47 Laws, W. R. and L. Brant (1979) Analysis of two state excited-state reactions. The fluorescence decay of 2-naphthol. J. Phys. Chem. 83, 795–802.
- 48 Knutson, J. R. (1992). Alternatives to consider in fluorescence decay analysis. Methods Enzymol. 210, 357–374.
- 49 Slama-Schwok, A., M. Rougeé, V. Ibanez, N. E. Geacintov, T. Montenay-Garestier, J. M. Lehn and C. Héléne (1989) Interactions of dimethyldiazaperopyrenium dication with nucleic acids. 2. Binding to double stranded polynucleotides. Biochemistry 28, 3234–3242.
- 50 Geacintov, N. E., T. Prusik and J. M. Khosrofian (1976) Properties of benzopyrene-DNA complexes investigated by fluorescence and triplet flash photolysis techniques. J. Am. Chem. Soc. 21, 6444–6452.
- 51 Renault, E., M. P. Fontaine-Aupart, M. Gardes-Albert, C. Rivalle and E. Bisagni (1996) Radical chemistry of the antitumor drug pazelliptine (PZE) in aqueous solution or intercalated in poly(dA)-poly(dT). J. Chem. Phys. 93, 194–202.
- 52 Fontaine-Aupart, M. P., E. Renault, L. Brian, J. F. Delouis and M. Gardes-Albert (1995) Triplet excited-state characterization and determination of the photoionization mechanism of the antitumoral drug pazelliptine. J. Photochem. Photobiol. A Chem. 90, 95–102.
- 53 Delatour, T., T. Douki, C. D'Ham and J. Cadet (1998) Photo-sensitization of thymine nucleobase by benzophenone through energy transfer, hydrogen abstraction and one-electron oxidation. J. Photochem. Photobiol. B Biol. 44, 191–198.
- 54 Basu Roy, M., P. C. Mandal, S. Basu and S. N. Bhattacharyya (1995) Photosensitization of DNA bases by 4(5)-nitroimidazole: a steady state and flash photolysis study. J. Chem. Parody Trans. 91, 1191–1196.
- 55 Artuso, T., J. Bernadou, B. Meunier, J. Piette and N. Paillous (1991) Mechanism of DNA cleavage mediated by photoexcited nonsteroidal antiinflammatory drugs. Photochem. Photobiol. 54, 205–213.
- 56 Candeias, L. P. and S. Steenken (1992) Ionization of purine nucleosides and nucleotides and their components by 193 nm laser photolysis in aqueous solution: model studies for oxidative damage of DNA. J. Am. Chem. Soc. 114, 699–704.
- 57 Bensasson, R. V., E. J. Land and T. G. Truscott (1983) Flash Photolysis and Pulse Radiolysis. Pergamon Press, New York .
- 58 Hall, D. B., R. E. Holmlin and J. K. Barton (1996) Oxidative DNA damage through long-range electron transfer. Nature 382, 731–735.
- 59 Breslin, D. T. and G. B. Schuster (1996) Anthraquinone pho-tonucleases: mechanisms for GG-selective and nonselective cleavage of double-stranded DNA. J. Am. Chem. Soc. 118, 2311–2319.
- 60 Melvin, T., T. Botchway, A. W. Parker and P. O. O'Neill (1995) Migration of photoinduced oxidative damage in models for DNA. J. Chem. Soc. Chem. Commun., 22, pp. 653–654.
- 61 Netzel, T. L., M. Zhao, K. Nafisi, J. Headrick, M. S. Sigman and B. Eaton (1995) Photophysics of 2′-deoxyuridine (dU) nucleosides covalently substituted with either 1-pyrenyl or 1-pyr-enoyl: observation of pyrene to nucleoside charge transfer emission in 5-(l-pyrenyl)-dU. J. Am. Chem. Soc. 117, 9119–9128.